Wall clock time and date at job start Mon Mar 30 2020 01:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50709 * 120.00377 * 2 1 4 4 H 1.08996 * 109.46774 * 244.99902 * 3 2 1 5 5 C 1.52994 * 109.46888 * 125.00208 * 3 2 1 6 6 O 1.42899 * 109.47440 * 304.99542 * 5 3 2 7 7 C 1.42898 * 114.00221 * 180.02562 * 6 5 3 8 8 N 1.46490 * 109.46902 * 5.00058 * 3 2 1 9 9 C 1.34780 * 120.00427 * 275.00045 * 8 3 2 10 10 O 1.21589 * 119.99465 * 0.02562 * 9 8 3 11 11 C 1.47636 * 120.00414 * 179.97438 * 9 8 3 12 12 C 1.40011 * 119.89616 * 179.97438 * 11 9 8 13 13 C 1.36310 * 120.10924 * 179.74696 * 12 11 9 14 14 C 1.40888 * 119.89369 * 0.25762 * 13 12 11 15 15 C 1.41113 * 120.11022 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00340 * 204.64020 * 15 14 13 17 17 C 1.40225 * 119.99501 * 24.64249 * 15 14 13 18 18 N 1.30650 * 120.00211 * 17.87474 * 17 15 14 19 19 Si 1.86794 * 120.00050 * 197.87472 * 17 15 14 20 20 H 1.48506 * 109.47002 * 59.99738 * 19 17 15 21 21 H 1.48498 * 109.47634 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47267 * 300.00310 * 19 17 15 23 23 C 1.40889 * 119.79085 * 0.02562 * 14 13 12 24 24 C 1.36318 * 119.88917 * 359.97438 * 23 14 13 25 25 H 1.08000 * 119.99681 * 359.97438 * 1 2 3 26 26 H 1.07992 * 120.00054 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99843 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47975 * 65.00264 * 5 3 2 29 29 H 1.09002 * 109.47067 * 185.00300 * 5 3 2 30 30 H 1.09002 * 109.46943 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.47262 * 300.00705 * 7 6 5 32 32 H 1.08995 * 109.47198 * 60.00373 * 7 6 5 33 33 H 0.97003 * 120.00332 * 94.99791 * 8 3 2 34 34 H 1.08001 * 119.94548 * 0.03305 * 12 11 9 35 35 H 1.08001 * 120.05980 * 180.28209 * 13 12 11 36 36 H 0.97002 * 120.00128 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.05749 * 180.02562 * 23 14 13 38 38 H 1.08002 * 119.94435 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6214 1.4025 -0.9314 5 6 3.0351 1.3330 1.1816 6 8 2.3184 1.0890 2.3935 7 6 3.1375 1.0943 3.5644 8 7 1.1162 2.4160 0.1204 9 6 0.5154 2.9116 -0.9796 10 8 0.7594 2.4363 -2.0718 11 6 -0.4398 4.0307 -0.8582 12 6 -1.0623 4.5442 -2.0024 13 6 -1.9488 5.5740 -1.8947 14 6 -2.2343 6.1254 -0.6301 15 6 -3.1517 7.1913 -0.5133 16 1 -3.0904 7.8669 0.3270 17 6 -4.1429 7.3730 -1.4883 18 7 -4.4507 6.3944 -2.2974 19 14 -5.0234 9.0143 -1.6305 20 1 -4.0342 10.0832 -1.9208 21 1 -6.0181 8.9488 -2.7311 22 1 -5.7174 9.3161 -0.3527 23 6 -1.6009 5.6094 0.5177 24 6 -0.7158 4.5793 0.4000 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.7938 0.5620 1.0466 29 1 3.5154 2.3100 1.2341 30 1 2.5193 0.9014 4.4412 31 1 3.8985 0.3187 3.4790 32 1 3.6196 2.0665 3.6661 33 1 0.9213 2.7949 0.9918 34 1 -0.8432 4.1205 -2.9714 35 1 -2.4319 5.9664 -2.7773 36 1 -5.1367 6.5201 -2.9716 37 1 -1.8169 6.0285 1.4893 38 1 -0.2301 4.1828 1.2794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320317647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:02 Heat of formation + Delta-G solvation = -44.295711 kcal Electronic energy + Delta-G solvation = -20593.642533 eV Core-core repulsion = 17401.414864 eV Total energy + Delta-G solvation = -3192.227669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.52251 -38.03787 -37.07436 -35.18977 -33.86651 -31.84793 -30.14890 -29.66159 -28.98436 -26.48668 -25.71615 -23.04542 -21.97242 -20.91419 -19.75616 -19.11043 -17.49987 -16.93815 -16.76847 -16.02545 -15.55544 -15.32413 -15.00624 -14.54966 -13.97795 -13.81026 -13.34769 -13.19918 -12.79155 -12.52859 -12.26125 -12.15426 -12.01397 -11.83450 -11.44303 -11.35492 -11.19979 -10.97563 -10.84350 -10.60012 -10.04834 -9.83271 -9.51040 -9.30569 -9.03893 -8.94386 -8.62382 -7.66989 -7.54150 -6.99615 -4.57902 2.26919 2.63575 2.93791 2.96657 2.99950 3.06414 3.58535 3.75997 3.84522 3.91818 4.59563 4.88821 4.97687 5.15089 5.22883 5.27685 5.49330 5.51673 5.54128 5.59821 5.67863 6.02739 6.14310 6.23084 6.32088 6.82580 6.83356 6.88296 6.90531 7.00385 7.09238 7.12474 7.24787 7.46601 7.65012 7.81942 7.90618 8.08295 8.30457 8.45660 8.65503 8.78301 9.11931 9.92265 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031613 B = 0.003768 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.502617 B = 7429.346931 C = 7918.972152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.169 4.169 3 C 0.179 3.821 4 H 0.104 0.896 5 C 0.058 3.942 6 O -0.382 6.382 7 C 0.031 3.969 8 N -0.733 5.733 9 C 0.571 3.429 10 O -0.571 6.571 11 C -0.284 4.284 12 C -0.036 4.036 13 C -0.183 4.183 14 C 0.129 3.871 15 C -0.445 4.445 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.769 5.769 19 Si 0.914 3.086 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.235 4.235 24 C -0.049 4.049 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.288 0.712 37 H 0.096 0.904 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 -6.207 7.260 13.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.074 3.926 4 H 0.122 0.878 5 C -0.019 4.019 6 O -0.300 6.300 7 C -0.066 4.066 8 N -0.387 5.387 9 C 0.366 3.634 10 O -0.452 6.452 11 C -0.288 4.288 12 C -0.055 4.055 13 C -0.202 4.202 14 C 0.125 3.875 15 C -0.472 4.472 16 H 0.102 0.898 17 C -0.147 4.147 18 N -0.392 5.392 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.187 1.187 23 C -0.255 4.255 24 C -0.068 4.068 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.237 0.763 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.303 -6.649 6.294 13.053 hybrid contribution -0.280 0.745 0.448 0.914 sum 9.023 -5.904 6.742 12.717 Atomic orbital electron populations 1.23802 0.96242 1.01861 0.98726 1.22998 0.96554 0.97220 1.02059 1.19875 0.90074 0.85724 0.96973 0.87809 1.22811 0.94184 1.00285 0.84617 1.87965 1.34827 1.92919 1.14321 1.22734 0.95616 0.99916 0.88286 1.45922 1.46279 1.35721 1.10754 1.18604 0.79619 0.82168 0.82970 1.90642 1.65148 1.62453 1.26960 1.18906 1.09975 1.04996 0.94944 1.20477 0.94097 0.94803 0.96137 1.21007 1.01004 1.00178 0.98027 1.17778 0.88889 0.89815 0.90979 1.19804 1.10158 1.10334 1.06911 0.89805 1.26100 0.96636 0.98069 0.93942 1.69745 1.24096 1.31309 1.14069 0.86267 0.79185 0.81752 0.79074 1.18490 1.20047 1.18703 1.20664 1.05500 1.01931 0.97381 1.20381 0.96227 0.95652 0.94495 0.87925 0.89132 0.87402 0.92097 0.92444 0.89663 0.94297 0.94106 0.76286 0.88208 0.86186 0.90118 0.88534 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 13.82 29.02 0.40 -2.31 16 2 C -0.17 -2.45 9.03 -36.02 -0.33 -2.77 16 3 C 0.18 2.58 2.92 -69.09 -0.20 2.38 16 4 H 0.10 1.57 7.58 -51.93 -0.39 1.18 16 5 C 0.06 0.65 5.67 37.15 0.21 0.86 16 6 O -0.38 -4.57 9.91 -35.23 -0.35 -4.92 16 7 C 0.03 0.26 11.01 101.05 1.11 1.38 16 8 N -0.73 -12.46 3.94 -55.95 -0.22 -12.68 16 9 C 0.57 12.19 6.35 -12.42 -0.08 12.11 16 10 O -0.57 -13.66 15.99 5.29 0.08 -13.58 16 11 C -0.28 -6.55 5.89 -104.73 -0.62 -7.16 16 12 C -0.04 -0.89 9.52 -39.61 -0.38 -1.26 16 13 C -0.18 -4.71 8.64 -39.27 -0.34 -5.05 16 14 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 15 C -0.44 -11.13 9.04 -37.75 -0.34 -11.47 16 16 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 17 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 18 N -0.77 -18.96 10.95 55.56 0.61 -18.35 16 19 Si 0.91 17.50 29.60 -169.99 -5.03 12.46 16 20 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 21 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.24 -5.50 9.73 -39.27 -0.38 -5.88 16 24 C -0.05 -1.05 9.47 -39.61 -0.38 -1.42 16 25 H 0.10 1.91 5.91 -52.49 -0.31 1.60 16 26 H 0.09 1.27 8.06 -52.49 -0.42 0.84 16 27 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 6.38 6.38 -40.82 -0.26 6.12 16 34 H 0.10 2.44 7.63 -52.49 -0.40 2.04 16 35 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 36 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -28.97 324.63 -6.97 -35.94 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -4.95 Total: 12.47 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -2.00 Total: -16.24 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.39 Total: -31.03 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.26 Total: -18.50 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.97 -6.97 -35.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320317647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.356 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds