Wall clock time and date at job start Mon Mar 30 2020 01:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00231 * 2 1 4 4 H 1.08999 * 109.47846 * 119.99511 * 3 2 1 5 5 C 1.53001 * 109.46632 * 239.99582 * 3 2 1 6 6 O 1.42900 * 109.47198 * 55.00151 * 5 3 2 7 7 C 1.42902 * 113.99903 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47048 * 359.97438 * 3 2 1 9 9 C 1.34780 * 120.00034 * 85.00802 * 8 3 2 10 10 O 1.21588 * 119.99523 * 359.97438 * 9 8 3 11 11 C 1.47635 * 119.99997 * 180.02562 * 9 8 3 12 12 C 1.40015 * 119.90024 * 359.71955 * 11 9 8 13 13 C 1.36315 * 120.11070 * 179.76253 * 12 11 9 14 14 C 1.40887 * 119.88781 * 0.51250 * 13 12 11 15 15 C 1.41109 * 120.10372 * 179.71733 * 14 13 12 16 16 H 1.08000 * 120.00169 * 204.64909 * 15 14 13 17 17 C 1.40231 * 119.99485 * 24.64848 * 15 14 13 18 18 N 1.30636 * 120.00503 * 17.87668 * 17 15 14 19 19 Si 1.86806 * 119.99490 * 197.87503 * 17 15 14 20 20 H 1.48492 * 109.47355 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47031 * 120.00474 * 19 17 15 22 22 H 1.48505 * 109.46801 * 239.99872 * 19 17 15 23 23 C 1.40888 * 119.79825 * 359.74389 * 14 13 12 24 24 C 1.36323 * 119.88929 * 359.97438 * 23 14 13 25 25 H 1.08000 * 120.00244 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99702 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99702 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47517 * 294.99476 * 5 3 2 29 29 H 1.09010 * 109.46951 * 174.99539 * 5 3 2 30 30 H 1.09000 * 109.47213 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.46697 * 299.99439 * 7 6 5 32 32 H 1.08995 * 109.47470 * 59.99348 * 7 6 5 33 33 H 0.97000 * 120.00071 * 265.00574 * 8 3 2 34 34 H 1.08002 * 119.93901 * 0.02562 * 12 11 9 35 35 H 1.07997 * 120.05534 * 180.23293 * 13 12 11 36 36 H 0.97002 * 120.00429 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.05886 * 179.97438 * 23 14 13 38 38 H 1.07997 * 119.94444 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 2.6902 1.3629 0.8900 5 6 2.9432 1.3859 -1.2492 6 8 2.1366 1.1936 -2.4131 7 6 2.8653 1.2501 -3.6410 8 7 1.1116 2.4186 -0.0006 9 6 0.5960 2.8651 1.1619 10 8 0.9207 2.3433 2.2110 11 6 -0.3638 3.9869 1.1612 12 6 -0.7325 4.5892 -0.0478 13 6 -1.6220 5.6221 -0.0538 14 6 -2.1623 6.0905 1.1601 15 6 -3.0789 7.1633 1.1596 16 1 -3.1910 7.7783 2.0404 17 6 -3.8443 7.4310 0.0155 18 7 -3.9812 6.5167 -0.9075 19 14 -4.6681 9.0951 -0.1887 20 1 -4.3610 9.9472 0.9880 21 1 -4.1611 9.7505 -1.4211 22 1 -6.1377 8.9101 -0.2953 23 6 -1.7842 5.4848 2.3746 24 6 -0.8984 4.4486 2.3701 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.7086 0.6110 -1.2055 29 1 3.4198 2.3652 -1.2953 30 1 2.1822 1.0955 -4.4763 31 1 3.3406 2.2264 -3.7368 32 1 3.6287 0.4722 -3.6467 33 1 0.8523 2.8346 -0.8377 34 1 -0.3146 4.2321 -0.9774 35 1 -1.9086 6.0836 -0.9872 36 1 -4.5110 6.7017 -1.6987 37 1 -2.1955 5.8407 3.3077 38 1 -0.6076 3.9839 3.3006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320317657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:06 Heat of formation + Delta-G solvation = -44.561577 kcal Electronic energy + Delta-G solvation = -20656.447945 eV Core-core repulsion = 17464.208747 eV Total energy + Delta-G solvation = -3192.239198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.50406 -38.02425 -37.06991 -35.19887 -33.85105 -31.88504 -30.19381 -29.43332 -29.10988 -26.47159 -25.71658 -23.06078 -21.94600 -20.92197 -19.82103 -19.01945 -17.50622 -16.89092 -16.76928 -16.01794 -15.47990 -15.44698 -14.95998 -14.52789 -13.98344 -13.80862 -13.35538 -13.19410 -12.80835 -12.54667 -12.20245 -12.09837 -12.01053 -11.87786 -11.42516 -11.34716 -11.26197 -10.93853 -10.81789 -10.62335 -10.02265 -9.80602 -9.54610 -9.33510 -9.02636 -8.93353 -8.61386 -7.69784 -7.52406 -7.02041 -4.58605 2.25325 2.64694 2.91517 2.95963 3.01582 3.05991 3.60696 3.75198 3.85843 3.90926 4.58418 4.91465 4.99508 5.17643 5.25606 5.29620 5.51463 5.52938 5.55145 5.59822 5.67963 6.08810 6.14038 6.24521 6.34193 6.78731 6.84357 6.85205 6.91692 7.02379 7.05135 7.15563 7.26181 7.45929 7.68277 7.82068 7.88277 8.09136 8.30046 8.42065 8.65016 8.77386 9.12085 9.89981 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.004171 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.896218 B = 6711.038768 C = 7466.667992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.169 4.169 3 C 0.179 3.821 4 H 0.104 0.896 5 C 0.058 3.942 6 O -0.381 6.381 7 C 0.031 3.969 8 N -0.732 5.732 9 C 0.572 3.428 10 O -0.573 6.573 11 C -0.284 4.284 12 C -0.062 4.062 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.771 5.771 19 Si 0.912 3.088 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.402 0.598 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.792 -5.998 -6.151 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.074 3.926 4 H 0.121 0.879 5 C -0.019 4.019 6 O -0.300 6.300 7 C -0.065 4.065 8 N -0.386 5.386 9 C 0.367 3.633 10 O -0.455 6.455 11 C -0.289 4.289 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.736 3.264 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.259 4.259 24 C -0.041 4.041 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.238 0.762 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.708 -6.449 -5.632 12.212 hybrid contribution -0.290 0.779 -0.767 1.131 sum 8.418 -5.670 -6.399 11.999 Atomic orbital electron populations 1.23796 0.96232 1.01851 0.98708 1.22994 0.96578 0.97211 1.02056 1.19874 0.90714 0.85683 0.96367 0.87861 1.22806 0.93291 1.00479 0.85325 1.87971 1.34908 1.93465 1.13638 1.22735 0.97071 0.99846 0.86888 1.45916 1.47150 1.35410 1.10105 1.18591 0.79855 0.82422 0.82398 1.90632 1.62711 1.60500 1.31649 1.18902 1.10378 1.04864 0.94742 1.20493 0.96830 0.96119 0.94666 1.20970 0.99723 1.00143 0.98922 1.17791 0.88805 0.89683 0.91187 1.19879 1.16988 1.11284 0.98945 0.89700 1.26094 0.95535 0.98320 0.94705 1.69750 1.29167 1.32824 1.07720 0.86185 0.78988 0.81537 0.79716 1.18063 1.19396 1.19675 1.20712 1.06197 1.01433 0.97522 1.20362 0.93641 0.94407 0.95697 0.89158 0.87901 0.87423 0.92114 0.92443 0.89648 0.94111 0.94308 0.76181 0.89278 0.86233 0.90289 0.88426 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 13.82 29.01 0.40 -2.31 16 2 C -0.17 -2.47 9.03 -36.03 -0.33 -2.80 16 3 C 0.18 2.61 2.92 -69.08 -0.20 2.41 16 4 H 0.10 1.57 7.58 -51.93 -0.39 1.17 16 5 C 0.06 0.66 5.67 37.16 0.21 0.87 16 6 O -0.38 -4.72 9.91 -35.23 -0.35 -5.07 16 7 C 0.03 0.28 11.01 101.05 1.11 1.39 16 8 N -0.73 -12.65 3.80 -55.94 -0.21 -12.86 16 9 C 0.57 12.22 6.63 -12.42 -0.08 12.14 16 10 O -0.57 -13.60 15.99 5.29 0.08 -13.52 16 11 C -0.28 -6.56 5.89 -104.73 -0.62 -7.18 16 12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.41 8.64 -39.27 -0.34 -4.75 16 14 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 15 C -0.44 -11.09 9.04 -37.75 -0.34 -11.43 16 16 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 17 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 18 N -0.77 -18.60 10.95 55.56 0.61 -17.99 16 19 Si 0.91 17.32 29.60 -169.99 -5.03 12.29 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.24 -5.84 9.73 -39.27 -0.38 -6.22 16 24 C -0.02 -0.52 9.52 -39.60 -0.38 -0.90 16 25 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16 26 H 0.10 1.90 6.12 -52.49 -0.32 1.58 16 27 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.40 6.62 6.38 -40.82 -0.26 6.36 16 34 H 0.09 1.74 6.37 -52.49 -0.33 1.40 16 35 H 0.12 2.99 6.16 -52.49 -0.32 2.67 16 36 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -28.75 324.97 -6.97 -35.71 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -4.96 Total: 12.71 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.00 Total: -16.17 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.40 Total: -30.85 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.26 Total: -18.59 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.75 -6.97 -35.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320317657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.847 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds