Wall clock time and date at job start Mon Mar 30 2020 01:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00231 * 2 1 4 4 H 1.08999 * 109.47846 * 119.99511 * 3 2 1 5 5 C 1.53001 * 109.46632 * 239.99582 * 3 2 1 6 6 O 1.42900 * 109.47198 * 55.00151 * 5 3 2 7 7 C 1.42902 * 113.99903 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47048 * 359.97438 * 3 2 1 9 9 C 1.34780 * 120.00034 * 85.00802 * 8 3 2 10 10 O 1.21588 * 119.99523 * 359.97438 * 9 8 3 11 11 C 1.47635 * 119.99997 * 180.02562 * 9 8 3 12 12 C 1.40015 * 119.90024 * 359.71955 * 11 9 8 13 13 C 1.36315 * 120.11070 * 179.76253 * 12 11 9 14 14 C 1.40887 * 119.88781 * 0.51250 * 13 12 11 15 15 C 1.41109 * 120.10372 * 179.71733 * 14 13 12 16 16 H 1.08000 * 120.00169 * 204.64909 * 15 14 13 17 17 C 1.40231 * 119.99485 * 24.64848 * 15 14 13 18 18 N 1.30636 * 120.00503 * 17.87668 * 17 15 14 19 19 Si 1.86806 * 119.99490 * 197.87503 * 17 15 14 20 20 H 1.48492 * 109.47355 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47031 * 120.00474 * 19 17 15 22 22 H 1.48505 * 109.46801 * 239.99872 * 19 17 15 23 23 C 1.40888 * 119.79825 * 359.74389 * 14 13 12 24 24 C 1.36323 * 119.88929 * 359.97438 * 23 14 13 25 25 H 1.08000 * 120.00244 * 180.02562 * 1 2 3 26 26 H 1.08002 * 119.99702 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99702 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47517 * 294.99476 * 5 3 2 29 29 H 1.09010 * 109.46951 * 174.99539 * 5 3 2 30 30 H 1.09000 * 109.47213 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.46697 * 299.99439 * 7 6 5 32 32 H 1.08995 * 109.47470 * 59.99348 * 7 6 5 33 33 H 0.97000 * 120.00071 * 265.00574 * 8 3 2 34 34 H 1.08002 * 119.93901 * 0.02562 * 12 11 9 35 35 H 1.07997 * 120.05534 * 180.23293 * 13 12 11 36 36 H 0.97002 * 120.00429 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.05886 * 179.97438 * 23 14 13 38 38 H 1.07997 * 119.94444 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 2.6902 1.3629 0.8900 5 6 2.9432 1.3859 -1.2492 6 8 2.1366 1.1936 -2.4131 7 6 2.8653 1.2501 -3.6410 8 7 1.1116 2.4186 -0.0006 9 6 0.5960 2.8651 1.1619 10 8 0.9207 2.3433 2.2110 11 6 -0.3638 3.9869 1.1612 12 6 -0.7325 4.5892 -0.0478 13 6 -1.6220 5.6221 -0.0538 14 6 -2.1623 6.0905 1.1601 15 6 -3.0789 7.1633 1.1596 16 1 -3.1910 7.7783 2.0404 17 6 -3.8443 7.4310 0.0155 18 7 -3.9812 6.5167 -0.9075 19 14 -4.6681 9.0951 -0.1887 20 1 -4.3610 9.9472 0.9880 21 1 -4.1611 9.7505 -1.4211 22 1 -6.1377 8.9101 -0.2953 23 6 -1.7842 5.4848 2.3746 24 6 -0.8984 4.4486 2.3701 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.7086 0.6110 -1.2055 29 1 3.4198 2.3652 -1.2953 30 1 2.1822 1.0955 -4.4763 31 1 3.3406 2.2264 -3.7368 32 1 3.6287 0.4722 -3.6467 33 1 0.8523 2.8346 -0.8377 34 1 -0.3146 4.2321 -0.9774 35 1 -1.9086 6.0836 -0.9872 36 1 -4.5110 6.7017 -1.6987 37 1 -2.1955 5.8407 3.3077 38 1 -0.6076 3.9839 3.3006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320317657.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:05 Heat of formation + Delta-G solvation = -61.348548 kcal Electronic energy + Delta-G solvation = -20657.175883 eV Core-core repulsion = 17464.208747 eV Total energy + Delta-G solvation = -3192.967136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04043 -39.32671 -38.61561 -36.53061 -35.66652 -33.36252 -31.83332 -31.29538 -30.31066 -27.74613 -27.00671 -24.29944 -23.53371 -22.77411 -21.45813 -20.32739 -19.36067 -18.48892 -17.80235 -17.25819 -16.98993 -16.52969 -16.20892 -15.85169 -15.71741 -15.09562 -15.04158 -14.88007 -14.45678 -13.96017 -13.74953 -13.48637 -13.24701 -13.08769 -13.04382 -12.84671 -12.61969 -12.37324 -12.31167 -11.92368 -11.75674 -11.37633 -11.12315 -10.73276 -10.56088 -10.20768 -10.10681 -9.57541 -9.40975 -8.79267 -6.48316 0.44818 1.14965 1.38788 1.42228 1.45893 1.55800 2.13060 2.18221 2.36559 2.78271 2.88675 3.69137 3.86865 4.01269 4.24898 4.29952 4.38666 4.43019 4.45877 4.55256 4.59582 4.63338 4.68582 4.92304 4.92749 5.02249 5.03835 5.16135 5.30050 5.49898 5.59028 5.69136 5.82361 5.93680 5.99614 6.00799 6.22670 6.25646 6.54163 6.72166 6.77349 6.89084 7.46665 8.16255 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.004171 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.896218 B = 6711.038768 C = 7466.667992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.169 3.831 4 H 0.101 0.899 5 C 0.065 3.935 6 O -0.407 6.407 7 C 0.026 3.974 8 N -0.717 5.717 9 C 0.575 3.425 10 O -0.600 6.600 11 C -0.294 4.294 12 C -0.053 4.053 13 C -0.198 4.198 14 C 0.102 3.898 15 C -0.474 4.474 16 H 0.086 0.914 17 C 0.038 3.962 18 N -0.799 5.799 19 Si 0.988 3.012 20 H -0.256 1.256 21 H -0.260 1.260 22 H -0.264 1.264 23 C -0.253 4.253 24 C -0.032 4.032 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.407 0.593 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.297 0.703 37 H 0.104 0.896 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 -6.268 -7.584 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.176 4.176 3 C 0.064 3.936 4 H 0.118 0.882 5 C -0.012 4.012 6 O -0.327 6.327 7 C -0.069 4.069 8 N -0.369 5.369 9 C 0.369 3.631 10 O -0.484 6.484 11 C -0.298 4.298 12 C -0.072 4.072 13 C -0.217 4.217 14 C 0.099 3.901 15 C -0.501 4.501 16 H 0.104 0.896 17 C -0.181 4.181 18 N -0.423 5.423 19 Si 0.808 3.192 20 H -0.180 1.180 21 H -0.184 1.184 22 H -0.188 1.188 23 C -0.272 4.272 24 C -0.052 4.052 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.157 0.843 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.243 0.757 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.695 -6.746 -7.098 13.780 hybrid contribution -0.522 0.758 -0.357 0.988 sum 9.173 -5.987 -7.455 13.250 Atomic orbital electron populations 1.23770 0.96963 1.01307 1.01176 1.23287 0.96232 0.98338 0.99776 1.20203 0.90408 0.84607 0.98345 0.88161 1.22757 0.92656 1.02127 0.83623 1.87927 1.36288 1.93714 1.14762 1.22904 0.97508 1.00955 0.85583 1.45785 1.46621 1.35584 1.08864 1.18329 0.79643 0.81972 0.83149 1.90610 1.63676 1.61294 1.32844 1.19207 1.10577 1.05418 0.94644 1.20696 0.95806 0.95035 0.95702 1.20996 1.00913 1.01344 0.98437 1.18134 0.89637 0.90501 0.91871 1.20146 1.17951 1.11832 1.00190 0.89636 1.26936 0.95583 1.01842 0.93710 1.69769 1.29580 1.34627 1.08306 0.85065 0.78014 0.76402 0.79768 1.17985 1.18409 1.18841 1.20856 1.06760 1.01879 0.97716 1.20511 0.93806 0.94446 0.96388 0.87533 0.90933 0.84319 0.89062 0.91651 0.89148 0.93371 0.92543 0.75651 0.86426 0.86925 0.89191 0.87756 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.10 13.82 67.78 0.94 -5.16 16 2 C -0.16 -4.27 9.03 25.65 0.23 -4.04 16 3 C 0.17 4.60 2.92 44.24 0.13 4.73 16 4 H 0.10 2.86 7.58 -2.39 -0.02 2.84 16 5 C 0.07 1.29 5.67 71.98 0.41 1.69 16 6 O -0.41 -9.02 9.91 -148.98 -1.48 -10.50 16 7 C 0.03 0.40 11.01 113.37 1.25 1.64 16 8 N -0.72 -24.08 3.80 -449.17 -1.71 -25.78 16 9 C 0.58 24.54 6.63 86.72 0.58 25.12 16 10 O -0.60 -28.56 15.99 -3.99 -0.06 -28.62 16 11 C -0.29 -13.72 5.89 -19.93 -0.12 -13.84 16 12 C -0.05 -2.42 9.47 22.25 0.21 -2.21 16 13 C -0.20 -9.97 8.64 22.47 0.19 -9.77 16 14 C 0.10 5.37 5.58 -21.28 -0.12 5.25 16 15 C -0.47 -24.21 9.04 23.46 0.21 -24.00 16 16 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 17 C 0.04 1.79 5.14 85.36 0.44 2.23 16 18 N -0.80 -38.73 10.95 21.87 0.24 -38.49 16 19 Si 0.99 35.02 29.60 68.60 2.03 37.05 16 20 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 21 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 22 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 23 C -0.25 -12.74 9.73 22.47 0.22 -12.52 16 24 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 25 H 0.11 2.89 8.06 -2.91 -0.02 2.86 16 26 H 0.07 2.71 6.12 -2.91 -0.02 2.69 16 27 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.41 12.92 6.38 -92.71 -0.59 12.33 16 34 H 0.12 4.51 6.37 -2.91 -0.02 4.49 16 35 H 0.11 5.76 6.16 -2.91 -0.02 5.74 16 36 H 0.30 12.73 8.29 -92.71 -0.77 11.96 16 37 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 38 H 0.10 4.89 7.63 -2.91 -0.02 4.87 16 Total: -1.00 -62.81 324.97 4.28 -58.53 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: 0.48 Total: 40.06 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 4.78 Total: -32.25 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -1.47 Total: -64.27 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.54 Total: -39.12 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -62.81 4.28 -58.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320317657.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.819 kcal (2) G-P(sol) polarization free energy of solvation -62.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds