Wall clock time and date at job start Mon Mar 30 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00105 * 2 1 4 4 H 1.09002 * 109.47273 * 5.00340 * 3 2 1 5 5 C 1.52994 * 109.46919 * 125.00211 * 3 2 1 6 6 O 1.42903 * 109.47180 * 55.00102 * 5 3 2 7 7 C 1.42899 * 114.00220 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.47314 * 245.00355 * 3 2 1 9 9 C 1.34777 * 119.99905 * 85.27273 * 8 3 2 10 10 O 1.21549 * 120.00302 * 359.73208 * 9 8 3 11 11 C 1.47882 * 120.00006 * 179.72585 * 9 8 3 12 12 C 1.39926 * 120.02511 * 359.72787 * 11 9 8 13 13 C 1.38328 * 120.35722 * 179.71652 * 12 11 9 14 14 C 1.37752 * 120.41164 * 0.56323 * 13 12 11 15 15 C 1.40749 * 120.04277 * 359.71623 * 14 13 12 16 16 C 1.41439 * 120.17984 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99317 * 150.17813 * 16 15 14 18 18 C 1.39931 * 120.00192 * 330.18164 * 16 15 14 19 19 N 1.30824 * 120.00255 * 161.72283 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 341.72984 * 18 16 15 21 21 H 1.48502 * 109.47434 * 95.41132 * 20 18 16 22 22 H 1.48500 * 109.47349 * 215.41096 * 20 18 16 23 23 H 1.48498 * 109.47186 * 335.41308 * 20 18 16 24 24 C 1.38997 * 120.02466 * 180.02562 * 11 9 8 25 25 H 1.08001 * 119.99916 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00156 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99916 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47228 * 175.00385 * 5 3 2 29 29 H 1.09005 * 109.47340 * 295.00103 * 5 3 2 30 30 H 1.08998 * 109.46799 * 60.00031 * 7 6 5 31 31 H 1.08993 * 109.47392 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47137 * 299.99850 * 7 6 5 33 33 H 0.96994 * 120.00134 * 265.00534 * 8 3 2 34 34 H 1.08001 * 119.81950 * 359.97438 * 12 11 9 35 35 H 1.07999 * 119.79461 * 180.25427 * 13 12 11 36 36 H 1.08006 * 119.97873 * 179.74206 * 14 13 12 37 37 H 0.96999 * 120.00223 * 180.02562 * 19 18 16 38 38 H 1.07989 * 120.20637 * 359.97411 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3587 2.1316 0.0896 5 6 3.0351 1.3330 1.1816 6 8 3.8841 0.1848 1.1274 7 6 4.8349 0.1141 2.1918 8 7 2.8132 1.4362 -1.2518 9 6 2.2114 1.9383 -2.3482 10 8 1.0453 2.2779 -2.2998 11 6 2.9698 2.0763 -3.6102 12 6 4.3138 1.6911 -3.6651 13 6 5.0281 1.8117 -4.8435 14 6 4.4283 2.3231 -5.9732 15 6 3.0789 2.7214 -5.9357 16 6 2.4600 3.2463 -7.0941 17 1 1.4002 3.1084 -7.2496 18 6 3.2208 3.9442 -8.0387 19 7 2.7600 4.1179 -9.2507 20 14 4.8946 4.6279 -7.5690 21 1 5.9522 3.6638 -7.9656 22 1 5.1154 5.9197 -8.2673 23 1 4.9469 4.8436 -6.1007 24 6 2.3498 2.5947 -4.7411 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.6424 2.2367 1.1313 29 1 2.4723 1.3249 2.1150 30 1 4.3097 0.0810 3.1464 31 1 5.4408 -0.7847 2.0787 32 1 5.4796 0.9926 2.1621 33 1 3.7437 1.1652 -1.2905 34 1 4.7950 1.2935 -2.7837 35 1 6.0639 1.5077 -4.8767 36 1 4.9938 2.4181 -6.8885 37 1 3.2876 4.6013 -9.9055 38 1 1.3139 2.8974 -4.7023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320323778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:12 Heat of formation + Delta-G solvation = -45.060447 kcal Electronic energy + Delta-G solvation = -20548.016063 eV Core-core repulsion = 17355.755232 eV Total energy + Delta-G solvation = -3192.260831 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68378 -38.24357 -37.24886 -35.35886 -33.71125 -32.57434 -30.63241 -30.01853 -29.06776 -26.44054 -25.20124 -23.65320 -22.35797 -20.67724 -20.05059 -19.83374 -17.91137 -16.75989 -16.38686 -16.26600 -15.71784 -15.48990 -15.23643 -14.66136 -14.37148 -13.98140 -13.64587 -13.40390 -13.06328 -12.74491 -12.72724 -12.46873 -12.03013 -11.70159 -11.69309 -11.51852 -11.13952 -11.02898 -10.76013 -10.53157 -10.00706 -9.95724 -9.71940 -9.59331 -9.32597 -9.05732 -8.82140 -7.84810 -7.73855 -6.99132 -4.53774 1.93787 2.28639 2.53511 3.06387 3.18219 3.26775 3.49276 3.64237 3.68718 3.94348 4.50221 4.69958 4.83590 5.03952 5.09673 5.17011 5.23809 5.31895 5.36639 5.41251 5.54257 5.75890 5.89668 5.99162 6.06296 6.40313 6.64992 6.67800 6.68687 6.71185 6.79752 6.93012 7.00793 7.23280 7.43316 7.52152 7.77005 7.84532 8.05347 8.29812 8.55017 8.71428 8.76177 10.03174 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.004161 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.466487 B = 6727.380057 C = 7420.071987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.163 4.163 3 C 0.178 3.822 4 H 0.101 0.899 5 C 0.057 3.943 6 O -0.385 6.385 7 C 0.031 3.969 8 N -0.723 5.723 9 C 0.565 3.435 10 O -0.547 6.547 11 C -0.108 4.108 12 C -0.215 4.215 13 C -0.084 4.084 14 C -0.222 4.222 15 C 0.082 3.918 16 C -0.443 4.443 17 H 0.093 0.907 18 C 0.084 3.916 19 N -0.805 5.805 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.289 1.289 23 H -0.244 1.244 24 C -0.136 4.136 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.405 0.595 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.286 0.714 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 -5.082 18.228 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.182 4.182 3 C 0.073 3.927 4 H 0.119 0.881 5 C -0.021 4.021 6 O -0.304 6.304 7 C -0.065 4.065 8 N -0.376 5.376 9 C 0.355 3.645 10 O -0.425 6.425 11 C -0.111 4.111 12 C -0.235 4.235 13 C -0.102 4.102 14 C -0.241 4.241 15 C 0.079 3.921 16 C -0.472 4.472 17 H 0.111 0.889 18 C -0.136 4.136 19 N -0.429 5.429 20 Si 0.737 3.263 21 H -0.196 1.196 22 H -0.217 1.217 23 H -0.167 1.167 24 C -0.156 4.156 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.131 0.869 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.241 0.759 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.606 -4.860 17.842 18.840 hybrid contribution 1.287 0.276 0.193 1.330 sum 4.893 -4.584 18.035 19.241 Atomic orbital electron populations 1.23885 0.95926 1.01881 0.99186 1.23115 0.95859 0.98490 1.00758 1.20081 0.92715 0.96752 0.83172 0.88082 1.22848 0.92490 0.88781 0.97942 1.87914 1.48962 1.44444 1.49047 1.22747 0.91877 1.02087 0.89830 1.45952 1.15639 1.66198 1.09831 1.18801 0.86472 0.75564 0.83683 1.90683 1.16856 1.50128 1.84844 1.19432 0.94374 1.04537 0.92757 1.20416 0.93866 1.11481 0.97689 1.20512 0.97872 0.98720 0.93090 1.21177 0.96994 1.08080 0.97867 1.17699 0.91367 0.90850 0.92192 1.19516 0.98110 1.29362 1.00180 0.88859 1.26158 0.99821 0.94200 0.93378 1.69691 1.39107 1.31041 1.03016 0.86313 0.80948 0.77676 0.81351 1.19558 1.21680 1.16713 1.21276 1.00075 1.03261 0.90974 0.88318 0.88551 0.86859 0.92291 0.91834 0.94146 0.89570 0.94016 0.75905 0.88519 0.88301 0.87910 0.90344 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 14.32 29.01 0.42 -1.73 16 2 C -0.16 -2.13 8.67 -36.03 -0.31 -2.44 16 3 C 0.18 2.32 2.74 -69.09 -0.19 2.13 16 4 H 0.10 1.40 7.22 -51.93 -0.38 1.02 16 5 C 0.06 0.56 5.67 37.15 0.21 0.77 16 6 O -0.38 -4.06 9.78 -35.23 -0.34 -4.40 16 7 C 0.03 0.23 11.01 101.05 1.11 1.34 16 8 N -0.72 -11.23 4.99 -55.87 -0.28 -11.51 16 9 C 0.56 11.26 7.73 -12.31 -0.10 11.16 16 10 O -0.55 -12.27 15.99 5.32 0.09 -12.19 16 11 C -0.11 -2.35 5.87 -105.04 -0.62 -2.96 16 12 C -0.21 -4.24 9.55 -38.92 -0.37 -4.61 16 13 C -0.08 -1.73 10.01 -39.73 -0.40 -2.13 16 14 C -0.22 -5.22 7.17 -38.81 -0.28 -5.50 16 15 C 0.08 2.09 5.10 -106.87 -0.55 1.54 16 16 C -0.44 -12.04 9.57 -37.73 -0.36 -12.40 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.08 2.18 5.40 -17.35 -0.09 2.09 16 19 N -0.80 -21.35 13.93 55.55 0.77 -20.58 16 20 Si 0.91 20.47 24.52 -169.99 -4.17 16.31 16 21 H -0.27 -5.81 6.71 56.52 0.38 -5.44 16 22 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.24 -5.62 6.86 56.52 0.39 -5.23 16 24 C -0.14 -3.31 9.34 -38.44 -0.36 -3.67 16 25 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 26 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 27 H 0.11 1.46 7.86 -52.49 -0.41 1.05 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.40 5.72 6.40 -40.82 -0.26 5.46 16 34 H 0.10 1.58 6.38 -52.49 -0.33 1.24 16 35 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.10 2.40 4.72 -52.48 -0.25 2.15 16 37 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 38 H 0.12 2.86 7.64 -52.49 -0.40 2.46 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -29.57 323.27 -5.94 -35.50 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.00 Total: 8.41 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.88 Total: -16.41 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.49 Total: -32.09 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.26 Total: -16.59 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.17 Total: 16.31 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.57 -5.94 -35.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320323778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.556 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds