Wall clock time and date at job start Mon Mar 30 2020 01:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00105 * 2 1 4 4 H 1.09002 * 109.47273 * 5.00340 * 3 2 1 5 5 C 1.52994 * 109.46919 * 125.00211 * 3 2 1 6 6 O 1.42903 * 109.47180 * 55.00102 * 5 3 2 7 7 C 1.42899 * 114.00220 * 179.97438 * 6 5 3 8 8 N 1.46497 * 109.47314 * 245.00355 * 3 2 1 9 9 C 1.34777 * 119.99905 * 85.27273 * 8 3 2 10 10 O 1.21549 * 120.00302 * 359.73208 * 9 8 3 11 11 C 1.47882 * 120.00006 * 179.72585 * 9 8 3 12 12 C 1.39926 * 120.02511 * 359.72787 * 11 9 8 13 13 C 1.38328 * 120.35722 * 179.71652 * 12 11 9 14 14 C 1.37752 * 120.41164 * 0.56323 * 13 12 11 15 15 C 1.40749 * 120.04277 * 359.71623 * 14 13 12 16 16 C 1.41439 * 120.17984 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99317 * 150.17813 * 16 15 14 18 18 C 1.39931 * 120.00192 * 330.18164 * 16 15 14 19 19 N 1.30824 * 120.00255 * 161.72283 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 341.72984 * 18 16 15 21 21 H 1.48502 * 109.47434 * 95.41132 * 20 18 16 22 22 H 1.48500 * 109.47349 * 215.41096 * 20 18 16 23 23 H 1.48498 * 109.47186 * 335.41308 * 20 18 16 24 24 C 1.38997 * 120.02466 * 180.02562 * 11 9 8 25 25 H 1.08001 * 119.99916 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00156 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99916 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47228 * 175.00385 * 5 3 2 29 29 H 1.09005 * 109.47340 * 295.00103 * 5 3 2 30 30 H 1.08998 * 109.46799 * 60.00031 * 7 6 5 31 31 H 1.08993 * 109.47392 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.47137 * 299.99850 * 7 6 5 33 33 H 0.96994 * 120.00134 * 265.00534 * 8 3 2 34 34 H 1.08001 * 119.81950 * 359.97438 * 12 11 9 35 35 H 1.07999 * 119.79461 * 180.25427 * 13 12 11 36 36 H 1.08006 * 119.97873 * 179.74206 * 14 13 12 37 37 H 0.96999 * 120.00223 * 180.02562 * 19 18 16 38 38 H 1.07989 * 120.20637 * 359.97411 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3587 2.1316 0.0896 5 6 3.0351 1.3330 1.1816 6 8 3.8841 0.1848 1.1274 7 6 4.8349 0.1141 2.1918 8 7 2.8132 1.4362 -1.2518 9 6 2.2114 1.9383 -2.3482 10 8 1.0453 2.2779 -2.2998 11 6 2.9698 2.0763 -3.6102 12 6 4.3138 1.6911 -3.6651 13 6 5.0281 1.8117 -4.8435 14 6 4.4283 2.3231 -5.9732 15 6 3.0789 2.7214 -5.9357 16 6 2.4600 3.2463 -7.0941 17 1 1.4002 3.1084 -7.2496 18 6 3.2208 3.9442 -8.0387 19 7 2.7600 4.1179 -9.2507 20 14 4.8946 4.6279 -7.5690 21 1 5.9522 3.6638 -7.9656 22 1 5.1154 5.9197 -8.2673 23 1 4.9469 4.8436 -6.1007 24 6 2.3498 2.5947 -4.7411 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.6424 2.2367 1.1313 29 1 2.4723 1.3249 2.1150 30 1 4.3097 0.0810 3.1464 31 1 5.4408 -0.7847 2.0787 32 1 5.4796 0.9926 2.1621 33 1 3.7437 1.1652 -1.2905 34 1 4.7950 1.2935 -2.7837 35 1 6.0639 1.5077 -4.8767 36 1 4.9938 2.4181 -6.8885 37 1 3.2876 4.6013 -9.9055 38 1 1.3139 2.8974 -4.7023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320323778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:12 Heat of formation + Delta-G solvation = -64.983998 kcal Electronic energy + Delta-G solvation = -20548.880013 eV Core-core repulsion = 17355.755232 eV Total energy + Delta-G solvation = -3193.124781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14621 -39.41364 -38.71766 -36.51181 -35.59037 -33.91692 -32.33610 -31.73654 -30.08241 -27.26856 -26.91014 -25.02885 -23.60212 -22.45493 -21.64926 -20.91478 -19.60515 -18.12394 -17.78380 -17.25841 -17.12250 -16.50682 -16.34981 -16.33111 -15.74742 -15.46673 -15.39410 -14.58364 -14.48951 -14.34877 -14.10743 -13.83363 -13.34901 -13.18677 -12.83484 -12.68552 -12.56972 -12.41344 -12.29353 -12.06374 -11.75606 -11.56402 -11.22131 -10.94348 -10.58633 -10.38008 -10.17092 -9.62781 -9.55496 -8.91547 -6.55564 0.18685 0.74397 1.23883 1.25881 1.41896 1.48961 1.96869 2.13223 2.32765 2.65496 2.84163 3.45789 3.77188 3.91018 3.98598 4.21298 4.26651 4.40240 4.47625 4.50516 4.59136 4.61398 4.66090 4.72636 4.89240 4.91785 4.94865 5.01659 5.15974 5.40299 5.42643 5.65290 5.67217 5.71871 5.82374 5.84544 6.11006 6.22093 6.30040 6.59538 6.66407 6.74184 7.25218 8.17634 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.004161 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.466487 B = 6727.380057 C = 7420.071987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.171 4.171 3 C 0.171 3.829 4 H 0.091 0.909 5 C 0.065 3.935 6 O -0.405 6.405 7 C 0.026 3.974 8 N -0.701 5.701 9 C 0.563 3.437 10 O -0.580 6.580 11 C -0.113 4.113 12 C -0.183 4.183 13 C -0.082 4.082 14 C -0.225 4.225 15 C 0.066 3.934 16 C -0.490 4.490 17 H 0.049 0.951 18 C 0.045 3.955 19 N -0.850 5.850 20 Si 0.968 3.032 21 H -0.246 1.246 22 H -0.277 1.277 23 H -0.252 1.252 24 C -0.166 4.166 25 H 0.090 0.910 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.415 0.585 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.295 0.705 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.050 -6.254 21.245 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.067 3.933 4 H 0.109 0.891 5 C -0.012 4.012 6 O -0.324 6.324 7 C -0.070 4.070 8 N -0.354 5.354 9 C 0.352 3.648 10 O -0.461 6.461 11 C -0.117 4.117 12 C -0.202 4.202 13 C -0.100 4.100 14 C -0.244 4.244 15 C 0.064 3.936 16 C -0.519 4.519 17 H 0.067 0.933 18 C -0.169 4.169 19 N -0.476 5.476 20 Si 0.790 3.210 21 H -0.171 1.171 22 H -0.203 1.203 23 H -0.175 1.175 24 C -0.187 4.187 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.253 0.747 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.189 -6.063 20.894 22.913 hybrid contribution 0.162 0.478 -0.480 0.697 sum 7.351 -5.585 20.414 22.404 Atomic orbital electron populations 1.24040 0.96103 1.02352 0.98569 1.23157 0.95981 0.98554 1.01288 1.20295 0.93450 0.96502 0.83020 0.89145 1.22756 0.92291 0.89233 0.96959 1.87871 1.49606 1.44487 1.50451 1.22923 0.91601 1.02977 0.89500 1.45799 1.15997 1.64163 1.09414 1.18596 0.85959 0.76005 0.84238 1.90675 1.18280 1.51809 1.85368 1.19726 0.95601 1.03602 0.92721 1.20994 0.92445 1.07640 0.99128 1.21035 1.00076 0.97015 0.91866 1.21386 0.95897 1.07758 0.99406 1.17771 0.92801 0.91339 0.91705 1.19462 0.96574 1.33136 1.02746 0.93251 1.26904 1.03298 0.93770 0.92915 1.69723 1.41062 1.32797 1.04005 0.85456 0.77132 0.77955 0.80440 1.17103 1.20348 1.17520 1.21202 0.99459 1.05678 0.92333 0.89124 0.86958 0.86346 0.91242 0.89798 0.93009 0.88683 0.93133 0.74715 0.83676 0.83515 0.87547 0.89422 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.17 -4.11 8.67 25.64 0.22 -3.89 16 3 C 0.17 4.09 2.74 44.24 0.12 4.21 16 4 H 0.09 2.39 7.22 -2.39 -0.02 2.37 16 5 C 0.06 1.06 5.67 71.98 0.41 1.47 16 6 O -0.40 -6.97 9.78 -148.98 -1.46 -8.43 16 7 C 0.03 0.28 11.01 113.37 1.25 1.53 16 8 N -0.70 -19.80 4.99 -448.96 -2.24 -22.04 16 9 C 0.56 21.80 7.73 86.80 0.67 22.47 16 10 O -0.58 -26.41 15.99 -3.87 -0.06 -26.48 16 11 C -0.11 -4.78 5.87 -20.13 -0.12 -4.90 16 12 C -0.18 -6.40 9.55 22.70 0.22 -6.18 16 13 C -0.08 -3.01 10.01 22.18 0.22 -2.79 16 14 C -0.23 -10.21 7.17 22.77 0.16 -10.04 16 15 C 0.07 3.47 5.10 -21.32 -0.11 3.37 16 16 C -0.49 -28.51 9.57 23.47 0.22 -28.29 16 17 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 18 C 0.05 2.47 5.40 85.25 0.46 2.93 16 19 N -0.85 -47.33 13.93 21.82 0.30 -47.03 16 20 Si 0.97 41.95 24.52 68.60 1.68 43.63 16 21 H -0.25 -9.69 6.71 99.48 0.67 -9.02 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.25 -11.08 6.86 99.48 0.68 -10.40 16 24 C -0.17 -8.42 9.34 23.01 0.21 -8.20 16 25 H 0.09 2.30 7.84 -2.91 -0.02 2.28 16 26 H 0.11 2.27 8.06 -2.91 -0.02 2.25 16 27 H 0.12 2.75 7.86 -2.91 -0.02 2.73 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.41 9.85 6.40 -92.71 -0.59 9.25 16 34 H 0.15 3.72 6.38 -2.91 -0.02 3.70 16 35 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.11 4.73 4.72 -2.91 -0.01 4.71 16 37 H 0.30 14.63 8.30 -92.71 -0.77 13.86 16 38 H 0.09 4.86 7.64 -2.92 -0.02 4.83 16 Total: -1.00 -68.48 323.27 3.55 -64.93 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.41 Total: 26.90 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 4.92 Total: -31.49 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -1.94 Total: -69.07 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.52 Total: -34.91 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.68 Total: 43.63 kcal Total: -68.48 3.55 -64.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320323778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.053 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds