Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 120.00104 * 2 1 4 4 H 1.48507 * 109.47110 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47226 * 239.99931 * 3 2 1 6 6 H 1.48503 * 109.46968 * 119.99785 * 3 2 1 7 7 C 1.40021 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00323 * 356.94291 * 7 2 1 9 9 C 1.41321 * 120.00014 * 176.94112 * 7 2 1 10 10 C 1.40598 * 119.78262 * 186.44582 * 9 7 2 11 11 C 1.38344 * 119.14663 * 179.97438 * 10 9 7 12 12 C 1.38644 * 118.68086 * 359.97438 * 11 10 9 13 13 C 1.39753 * 119.48782 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.58099 * 179.97438 * 13 12 11 15 15 C 1.46505 * 120.00204 * 359.97438 * 14 13 12 16 16 H 1.09000 * 109.62398 * 35.39922 * 15 14 13 17 17 C 1.53062 * 109.63425 * 155.99782 * 15 14 13 18 18 C 1.51822 * 110.72709 * 204.65062 * 17 15 14 19 19 C 1.51774 * 113.79505 * 293.15205 * 18 17 15 20 20 C 1.52985 * 110.87886 * 67.01767 * 19 18 17 21 21 N 1.47201 * 108.66417 * 273.53385 * 20 19 18 22 22 C 1.33372 * 120.42682 * 71.99417 * 21 20 19 23 23 O 1.21280 * 119.88914 * 179.67748 * 22 21 20 24 24 N 1.31979 * 120.83709 * 359.74363 * 13 12 11 25 25 H 0.96995 * 120.00103 * 175.11321 * 1 2 3 26 26 H 1.07994 * 120.42601 * 359.95545 * 10 9 7 27 27 H 1.07995 * 120.66171 * 179.97438 * 11 10 9 28 28 H 1.07997 * 120.25125 * 179.97438 * 12 11 10 29 29 H 0.97005 * 120.00521 * 179.97438 * 14 13 12 30 30 H 1.09001 * 109.21923 * 324.95038 * 17 15 14 31 31 H 1.08997 * 109.22154 * 84.30021 * 17 15 14 32 32 H 1.09004 * 108.60456 * 172.04802 * 18 17 15 33 33 H 1.08998 * 108.52570 * 54.20387 * 18 17 15 34 34 H 1.08999 * 109.19909 * 306.65591 * 19 18 17 35 35 H 1.09001 * 109.15563 * 187.34921 * 19 18 17 36 36 H 1.09000 * 109.60732 * 153.78287 * 20 19 18 37 37 H 1.08999 * 109.60670 * 33.28670 * 20 19 18 38 38 H 0.96996 * 119.78871 * 251.96973 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2764 2.7465 0.0006 5 1 3.0952 1.6964 -1.2125 6 1 3.0952 1.6964 1.2126 7 6 2.0075 -1.2126 0.0005 8 1 1.4687 -2.1473 0.0508 9 6 3.4192 -1.2135 -0.0648 10 6 4.1113 -2.4298 -0.2009 11 6 5.4932 -2.4154 -0.2641 12 6 6.1499 -1.1965 -0.1911 13 6 5.4059 -0.0212 -0.0560 14 7 6.0615 1.2003 0.0178 15 6 7.5243 1.2516 -0.0454 16 1 7.8885 0.4815 -0.7254 17 6 7.9698 2.6307 -0.5376 18 6 9.3429 2.5540 -1.1808 19 6 10.4570 2.2153 -0.2073 20 6 10.3036 0.7881 0.3217 21 7 9.4091 0.8125 1.4905 22 6 8.1015 1.0250 1.3360 23 8 7.3726 1.0373 2.3052 24 7 4.0877 -0.0574 -0.0022 25 1 -0.4850 -0.8369 -0.0716 26 1 3.5710 -3.3633 -0.2552 27 1 6.0494 -3.3352 -0.3682 28 1 7.2281 -1.1558 -0.2375 29 1 5.5511 2.0199 0.1113 30 1 7.2511 3.0000 -1.2692 31 1 8.0065 3.3186 0.3071 32 1 9.5648 3.5161 -1.6426 33 1 9.3182 1.7924 -1.9601 34 1 10.4262 2.9130 0.6296 35 1 11.4167 2.3079 -0.7158 36 1 11.2789 0.4002 0.6157 37 1 9.8742 0.1545 -0.4543 38 1 9.7729 0.6727 2.3787 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320363692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = -42.265573 kcal Electronic energy + Delta-G solvation = -21594.318103 eV Core-core repulsion = 18434.471218 eV Total energy + Delta-G solvation = -3159.846885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56998 -40.33998 -37.74909 -36.90680 -35.54615 -34.13629 -33.01094 -31.87671 -29.94646 -27.27762 -26.84750 -25.03608 -23.71304 -22.62766 -21.58191 -20.73105 -20.06436 -18.42427 -18.19979 -18.01084 -17.18837 -16.43930 -16.15558 -15.71850 -15.57589 -15.29410 -14.91105 -14.83883 -14.71638 -14.30271 -14.19207 -13.91632 -13.63658 -13.19455 -12.81160 -12.69013 -12.32788 -12.26456 -11.96306 -11.77260 -11.62639 -11.58264 -11.52890 -11.18093 -10.61300 -10.32723 -10.05486 -9.69218 -9.23095 -8.65249 -6.81685 0.75819 0.98810 1.54997 1.63627 1.71632 1.97012 2.15634 2.46832 2.52479 2.69542 3.47826 3.64641 3.71852 3.81743 4.05156 4.15576 4.22680 4.28543 4.48599 4.53403 4.65998 4.69133 4.75345 4.78775 4.86222 5.03208 5.10507 5.19179 5.26210 5.38075 5.43182 5.46851 5.63923 5.76955 5.92977 5.95533 6.11531 6.26341 6.50108 6.54766 6.82422 7.29112 7.69198 7.96214 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.005669 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.328754 B = 4937.933528 C = 5459.733595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.018 3.982 3 Si 1.198 2.802 4 H -0.334 1.334 5 H -0.287 1.287 6 H -0.303 1.303 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.271 3.729 10 C -0.328 4.328 11 C -0.007 4.007 12 C -0.348 4.348 13 C 0.429 3.571 14 N -0.717 5.717 15 C 0.145 3.855 16 H 0.122 0.878 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.139 4.139 20 C 0.096 3.904 21 N -0.714 5.714 22 C 0.493 3.507 23 O -0.594 6.594 24 N -0.641 5.641 25 H 0.281 0.719 26 H 0.107 0.893 27 H 0.146 0.854 28 H 0.131 0.869 29 H 0.396 0.604 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.823 4.757 -4.416 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.199 4.199 3 Si 1.034 2.966 4 H -0.269 1.269 5 H -0.215 1.215 6 H -0.232 1.232 7 C -0.545 4.545 8 H 0.085 0.915 9 C 0.146 3.854 10 C -0.351 4.351 11 C -0.031 4.031 12 C -0.373 4.373 13 C 0.192 3.808 14 N -0.350 5.350 15 C 0.035 3.965 16 H 0.139 0.861 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.177 4.177 20 C -0.027 4.027 21 N -0.366 5.366 22 C 0.277 3.723 23 O -0.474 6.474 24 N -0.371 5.371 25 H 0.091 0.909 26 H 0.125 0.875 27 H 0.164 0.836 28 H 0.149 0.851 29 H 0.230 0.770 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.101 0.899 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 24.802 6.956 -4.015 26.070 hybrid contribution -0.395 -2.641 0.728 2.768 sum 24.406 4.315 -3.287 25.002 Atomic orbital electron populations 1.70665 1.08371 1.32574 1.33988 1.28444 0.95601 1.07815 0.88029 0.81146 0.69316 0.67810 0.78376 1.26887 1.21496 1.23242 1.20741 0.91437 0.95775 1.46577 0.91479 1.18460 0.93273 0.87539 0.86159 1.21547 0.95333 0.97333 1.20882 1.21161 0.93175 0.97693 0.91029 1.20862 0.99353 0.91437 1.25662 1.18470 0.87873 0.86830 0.87616 1.44205 1.04969 1.05192 1.80585 1.21282 0.79485 1.02364 0.93328 0.86093 1.21605 1.00024 0.92424 1.01622 1.21143 0.91212 1.04361 0.98656 1.21851 1.00114 0.96063 0.99642 1.22209 0.94970 0.98056 0.87417 1.46006 1.06723 1.71665 1.12172 1.21641 0.83038 0.75189 0.92396 1.90758 1.60616 1.52917 1.43101 1.65639 1.08266 1.29142 1.34005 0.90853 0.87463 0.83624 0.85078 0.76984 0.89457 0.91820 0.89357 0.90157 0.91955 0.87395 0.86231 0.89923 0.76106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -49.24 13.65 21.84 0.30 -48.94 16 2 C 0.02 1.04 5.52 85.29 0.47 1.51 16 3 Si 1.20 63.38 25.45 68.60 1.75 65.13 16 4 H -0.33 -17.15 7.11 99.48 0.71 -16.44 16 5 H -0.29 -14.68 6.94 99.48 0.69 -13.99 16 6 H -0.30 -16.65 6.94 99.48 0.69 -15.96 16 7 C -0.51 -30.73 9.57 23.46 0.22 -30.51 16 8 H 0.07 4.06 8.06 -2.91 -0.02 4.03 16 9 C 0.27 15.31 6.42 40.19 0.26 15.56 16 10 C -0.33 -16.23 9.83 22.87 0.22 -16.00 16 11 C -0.01 -0.28 10.15 22.39 0.23 -0.05 16 12 C -0.35 -14.24 9.19 22.73 0.21 -14.04 16 13 C 0.43 19.96 7.62 133.40 1.02 20.98 16 14 N -0.72 -27.57 4.75 -326.82 -1.55 -29.12 16 15 C 0.14 3.87 1.82 44.49 0.08 3.96 16 16 H 0.12 2.78 5.11 -2.39 -0.01 2.77 16 17 C -0.12 -2.20 5.18 30.23 0.16 -2.04 16 18 C -0.12 -1.17 5.28 29.80 0.16 -1.01 16 19 C -0.14 -1.02 5.73 30.19 0.17 -0.85 16 20 C 0.10 0.85 6.47 86.24 0.56 1.41 16 21 N -0.71 -13.17 5.27 -462.59 -2.44 -15.61 16 22 C 0.49 14.54 6.83 88.10 0.60 15.15 16 23 O -0.59 -25.15 17.31 -3.03 -0.05 -25.20 16 24 N -0.64 -34.86 4.55 -186.58 -0.85 -35.71 16 25 H 0.28 16.00 8.72 -92.71 -0.81 15.19 16 26 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 27 H 0.15 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.13 4.33 6.16 -2.91 -0.02 4.32 16 29 H 0.40 15.54 8.72 -92.70 -0.81 14.73 16 30 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 31 H 0.06 1.28 7.86 -2.39 -0.02 1.26 16 32 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.08 0.68 7.88 -2.39 -0.02 0.66 16 34 H 0.06 0.62 8.05 -2.39 -0.02 0.60 16 35 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.71 6.71 -2.39 -0.02 0.70 16 38 H 0.40 6.83 8.91 -92.71 -0.83 6.00 16 Total: -1.00 -79.94 306.38 0.90 -79.04 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -0.61 Total: 16.35 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 4.36 Total: -5.93 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -4.54 Total: -129.39 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 63.38 SS G_CDS: 1.75 Total: 65.13 kcal Total: -79.94 0.90 -79.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.776 kcal (2) G-P(sol) polarization free energy of solvation -79.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds