Wall clock time and date at job start Mon Mar 30 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 108.57644 * 2 1 4 4 O 1.42099 * 108.57683 * 228.97769 * 2 1 3 5 5 C 1.81399 * 101.91990 * 114.49176 * 2 1 3 6 6 H 1.09000 * 108.96875 * 66.08827 * 5 2 1 7 7 C 1.54520 * 109.04160 * 307.16784 * 5 2 1 8 8 C 1.50531 * 108.86317 * 162.18817 * 7 5 2 9 9 C 1.53921 * 112.93435 * 91.75306 * 8 7 5 10 10 N 1.47980 * 113.36042 * 317.73866 * 9 8 7 11 11 C 1.46906 * 111.06001 * 192.21161 * 10 9 8 12 12 C 1.52999 * 109.46727 * 297.43227 * 11 10 9 13 13 C 1.50700 * 109.47173 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99529 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00530 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99578 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00266 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47215 * 60.00230 * 17 15 13 19 19 H 1.48502 * 109.46928 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47297 * 300.00213 * 17 15 13 21 21 C 1.44307 * 113.62884 * 318.19615 * 10 9 8 22 22 C 1.45884 * 109.03577 * 185.00296 * 5 2 1 23 23 H 1.08996 * 109.47431 * 305.50571 * 1 2 3 24 24 H 1.08998 * 109.47238 * 65.51186 * 1 2 3 25 25 H 1.09002 * 109.46925 * 185.51203 * 1 2 3 26 26 H 1.09003 * 109.57169 * 282.00674 * 7 5 2 27 27 H 1.09007 * 109.56911 * 42.37173 * 7 5 2 28 28 H 1.08995 * 108.79299 * 212.64751 * 8 7 5 29 29 H 1.09003 * 108.78662 * 330.86723 * 8 7 5 30 30 H 1.09003 * 108.70799 * 78.75261 * 9 8 7 31 31 H 1.08995 * 108.71010 * 196.88783 * 9 8 7 32 32 H 1.08992 * 109.47227 * 57.43492 * 11 10 9 33 33 H 1.09002 * 109.46772 * 177.43440 * 11 10 9 34 34 H 1.08997 * 109.47668 * 300.00556 * 12 11 10 35 35 H 1.09002 * 109.47321 * 60.00548 * 12 11 10 36 36 H 0.97001 * 120.00185 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.69591 * 335.62041 * 21 10 9 38 38 H 1.08996 * 109.69408 * 215.07351 * 21 10 9 39 39 H 1.08992 * 108.84605 * 61.23765 * 22 5 2 40 40 H 1.08999 * 108.75703 * 302.81959 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 1 1.8531 -1.7728 1.6185 7 6 1.4294 0.0434 2.7124 8 6 1.3769 -0.7985 3.9592 9 6 2.5539 -0.5302 4.9141 10 7 3.8534 -0.3931 4.2196 11 6 4.9689 -0.4289 5.1749 12 6 4.8580 0.7588 6.1330 13 6 6.0019 0.7218 7.1134 14 1 6.7349 -0.0695 7.0583 15 6 6.1128 1.6980 8.0807 16 7 5.2199 2.6613 8.1481 17 14 7.5311 1.6525 9.2955 18 1 8.8175 1.7309 8.5577 19 1 7.4234 2.8052 10.2255 20 1 7.4803 0.3857 10.0685 21 6 4.0479 -1.3547 3.1613 22 6 3.6312 -0.7017 1.8305 23 1 -0.3634 0.5968 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.9503 0.9772 2.9240 27 1 0.4158 0.2574 2.3732 28 1 0.4445 -0.5907 4.4842 29 1 1.3894 -1.8503 3.6734 30 1 2.3539 0.3880 5.4663 31 1 2.6242 -1.3553 5.6229 32 1 4.9313 -1.3585 5.7427 33 1 5.9130 -0.3719 4.6332 34 1 4.8955 1.6884 5.5653 35 1 3.9138 0.7018 6.6747 36 1 5.2976 3.3479 8.8288 37 1 3.4326 -2.2350 3.3471 38 1 5.0979 -1.6434 3.1158 39 1 3.9630 0.3365 1.8285 40 1 4.1204 -1.2288 1.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321201736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:38 Heat of formation + Delta-G solvation = -74.356263 kcal Electronic energy + Delta-G solvation = -20176.585848 eV Core-core repulsion = 17118.498607 eV Total energy + Delta-G solvation = -3058.087241 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.08791 -37.08194 -36.12465 -35.21169 -32.86951 -32.39948 -30.13963 -29.48024 -26.19758 -25.43258 -23.77960 -21.18499 -20.74380 -19.27829 -18.93212 -17.26628 -16.57860 -16.21851 -16.04006 -15.52288 -14.85453 -14.60659 -14.34192 -13.95633 -13.77584 -13.42764 -13.18700 -13.07212 -12.71110 -12.33217 -12.14603 -12.09134 -12.06809 -11.83973 -11.23589 -11.17364 -11.07292 -10.95106 -10.81547 -10.78224 -10.60869 -10.46104 -10.07599 -9.80928 -9.33193 -9.12360 -8.32909 -7.63407 -5.99366 -4.01808 -0.15141 2.57869 3.33441 3.38058 3.40236 3.50168 3.79790 4.24727 4.30929 4.46342 4.53668 4.55136 4.78920 4.88178 5.10762 5.17485 5.32776 5.36601 5.38772 5.51790 5.59277 5.67368 5.78408 5.83316 6.00708 6.05731 6.22232 6.25417 6.27105 6.46994 6.52373 6.96689 7.50422 7.63805 7.84195 7.90514 8.08618 8.43654 9.05278 9.61874 11.11937 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.036522 B = 0.003710 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.486125 B = 7544.749823 C = 7594.332436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.412 3.588 3 O -0.933 6.933 4 O -0.947 6.947 5 C -0.547 4.547 6 H 0.129 0.871 7 C -0.102 4.102 8 C -0.113 4.113 9 C 0.062 3.938 10 N -0.550 5.550 11 C 0.068 3.932 12 C 0.027 3.973 13 C -0.524 4.524 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 C 0.077 3.923 22 C -0.114 4.114 23 H 0.132 0.868 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.016 0.984 36 H 0.261 0.739 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -8.381 -13.863 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.596 3.404 3 O -0.930 6.930 4 O -0.945 6.945 5 C -0.657 4.657 6 H 0.147 0.853 7 C -0.140 4.140 8 C -0.152 4.152 9 C -0.065 4.065 10 N -0.275 5.275 11 C -0.059 4.059 12 C -0.011 4.011 13 C -0.563 4.563 14 H 0.071 0.929 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.054 4.054 22 C -0.153 4.153 23 H 0.151 0.849 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.520 -7.484 -14.674 20.101 hybrid contribution 0.130 -1.135 1.699 2.047 sum -11.390 -8.619 -12.975 19.297 Atomic orbital electron populations 1.30342 1.27515 1.11432 1.11638 1.08270 0.78175 0.76110 0.77823 1.93605 1.78640 1.34279 1.86467 1.93577 1.79140 1.67262 1.54478 1.29059 1.06132 1.11493 1.18978 0.85293 1.21353 0.98391 1.00445 0.93795 1.21330 0.98698 0.99314 0.95819 1.22385 0.87886 1.01571 0.94664 1.60746 1.02756 1.50429 1.13587 1.22403 0.90886 0.99627 0.92944 1.19104 0.96854 0.92527 0.92583 1.21160 1.10452 1.10358 1.14281 0.92917 1.24979 0.96175 0.95426 0.97638 1.69957 1.35041 1.13628 1.34586 0.86667 0.82917 0.77405 0.81043 1.20220 1.21276 1.20354 1.21577 1.00366 0.92792 0.90677 1.20349 0.90697 1.04680 0.99566 0.84914 0.85547 0.85505 0.88085 0.91366 0.91077 0.92441 0.89952 0.95125 0.96347 0.91940 0.95640 0.96547 0.92952 0.94319 0.91075 0.88898 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.74 10.01 101.05 1.01 -2.73 16 2 S 2.41 23.53 4.83 -107.50 -0.52 23.01 16 3 O -0.93 -12.98 17.96 -57.83 -1.04 -14.02 16 4 O -0.95 -12.24 18.10 -57.83 -1.05 -13.29 16 5 C -0.55 -5.20 2.19 -29.30 -0.06 -5.27 16 6 H 0.13 0.89 7.59 -51.90 -0.39 0.50 16 7 C -0.10 -1.01 4.94 -27.17 -0.13 -1.14 16 8 C -0.11 -1.22 5.28 -27.48 -0.14 -1.37 16 9 C 0.06 0.96 4.79 -2.75 -0.01 0.94 16 10 N -0.55 -9.34 4.02 -234.60 -0.94 -10.28 16 11 C 0.07 1.39 4.74 -3.82 -0.02 1.37 16 12 C 0.03 0.68 4.81 -27.88 -0.13 0.55 16 13 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 17 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 C 0.08 1.05 5.41 -4.70 -0.03 1.03 16 22 C -0.11 -1.39 4.53 -29.59 -0.13 -1.52 16 23 H 0.13 0.59 6.31 -51.93 -0.33 0.26 16 24 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.13 0.46 8.14 -51.92 -0.42 0.03 16 26 H 0.10 1.25 7.79 -51.93 -0.40 0.85 16 27 H 0.07 0.43 5.49 -51.92 -0.28 0.15 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.55 6.66 -51.93 -0.35 0.20 16 30 H 0.08 1.43 6.97 -51.93 -0.36 1.07 16 31 H 0.03 0.48 7.95 -51.93 -0.41 0.07 16 32 H 0.02 0.37 8.04 -51.93 -0.42 -0.04 16 33 H 0.06 1.27 7.79 -51.93 -0.40 0.87 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.43 6.72 -51.93 -0.35 0.09 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.04 0.48 6.79 -51.93 -0.35 0.13 16 38 H 0.07 0.97 7.40 -51.93 -0.38 0.59 16 39 H 0.09 1.30 7.99 -51.93 -0.42 0.89 16 40 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -35.26 320.55 -9.58 -44.84 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -6.51 Total: -4.09 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -0.07 Total: -21.59 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.21 Total: -36.26 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -2.09 Total: -27.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 23.53 SS G_CDS: -0.52 Total: 23.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.26 -9.58 -44.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321201736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.514 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds