Wall clock time and date at job start Mon Mar 30 2020 01:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 108.57644 * 2 1 4 4 O 1.42099 * 108.57683 * 228.97769 * 2 1 3 5 5 C 1.81399 * 101.91990 * 114.49176 * 2 1 3 6 6 H 1.09000 * 108.96875 * 66.08827 * 5 2 1 7 7 C 1.54520 * 109.04160 * 307.16784 * 5 2 1 8 8 C 1.50531 * 108.86317 * 162.18817 * 7 5 2 9 9 C 1.53921 * 112.93435 * 91.75306 * 8 7 5 10 10 N 1.47980 * 113.36042 * 317.73866 * 9 8 7 11 11 C 1.46906 * 111.06001 * 192.21161 * 10 9 8 12 12 C 1.52999 * 109.46727 * 297.43227 * 11 10 9 13 13 C 1.50700 * 109.47173 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99529 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00530 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99578 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00266 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47215 * 60.00230 * 17 15 13 19 19 H 1.48502 * 109.46928 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47297 * 300.00213 * 17 15 13 21 21 C 1.44307 * 113.62884 * 318.19615 * 10 9 8 22 22 C 1.45884 * 109.03577 * 185.00296 * 5 2 1 23 23 H 1.08996 * 109.47431 * 305.50571 * 1 2 3 24 24 H 1.08998 * 109.47238 * 65.51186 * 1 2 3 25 25 H 1.09002 * 109.46925 * 185.51203 * 1 2 3 26 26 H 1.09003 * 109.57169 * 282.00674 * 7 5 2 27 27 H 1.09007 * 109.56911 * 42.37173 * 7 5 2 28 28 H 1.08995 * 108.79299 * 212.64751 * 8 7 5 29 29 H 1.09003 * 108.78662 * 330.86723 * 8 7 5 30 30 H 1.09003 * 108.70799 * 78.75261 * 9 8 7 31 31 H 1.08995 * 108.71010 * 196.88783 * 9 8 7 32 32 H 1.08992 * 109.47227 * 57.43492 * 11 10 9 33 33 H 1.09002 * 109.46772 * 177.43440 * 11 10 9 34 34 H 1.08997 * 109.47668 * 300.00556 * 12 11 10 35 35 H 1.09002 * 109.47321 * 60.00548 * 12 11 10 36 36 H 0.97001 * 120.00185 * 179.97438 * 16 15 13 37 37 H 1.09002 * 109.69591 * 335.62041 * 21 10 9 38 38 H 1.08996 * 109.69408 * 215.07351 * 21 10 9 39 39 H 1.08992 * 108.84605 * 61.23765 * 22 5 2 40 40 H 1.08999 * 108.75703 * 302.81959 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 1 1.8531 -1.7728 1.6185 7 6 1.4294 0.0434 2.7124 8 6 1.3769 -0.7985 3.9592 9 6 2.5539 -0.5302 4.9141 10 7 3.8534 -0.3931 4.2196 11 6 4.9689 -0.4289 5.1749 12 6 4.8580 0.7588 6.1330 13 6 6.0019 0.7218 7.1134 14 1 6.7349 -0.0695 7.0583 15 6 6.1128 1.6980 8.0807 16 7 5.2199 2.6613 8.1481 17 14 7.5311 1.6525 9.2955 18 1 8.8175 1.7309 8.5577 19 1 7.4234 2.8052 10.2255 20 1 7.4803 0.3857 10.0685 21 6 4.0479 -1.3547 3.1613 22 6 3.6312 -0.7017 1.8305 23 1 -0.3634 0.5968 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.9503 0.9772 2.9240 27 1 0.4158 0.2574 2.3732 28 1 0.4445 -0.5907 4.4842 29 1 1.3894 -1.8503 3.6734 30 1 2.3539 0.3880 5.4663 31 1 2.6242 -1.3553 5.6229 32 1 4.9313 -1.3585 5.7427 33 1 5.9130 -0.3719 4.6332 34 1 4.8955 1.6884 5.5653 35 1 3.9138 0.7018 6.6747 36 1 5.2976 3.3479 8.8288 37 1 3.4326 -2.2350 3.3471 38 1 5.0979 -1.6434 3.1158 39 1 3.9630 0.3365 1.8285 40 1 4.1204 -1.2288 1.0114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321201736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:38 Heat of formation + Delta-G solvation = -101.392143 kcal Electronic energy + Delta-G solvation = -20177.758212 eV Core-core repulsion = 17118.498607 eV Total energy + Delta-G solvation = -3059.259605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20070 -37.96066 -37.00591 -36.55992 -34.85372 -33.37156 -31.65830 -30.33198 -27.66146 -26.49944 -25.47795 -22.63347 -21.89323 -20.52759 -19.71347 -18.58335 -18.11259 -17.07221 -17.01421 -16.56731 -16.54167 -16.09177 -15.54716 -14.97988 -14.77653 -14.60435 -14.28503 -13.89452 -13.79221 -13.65317 -13.43275 -13.18584 -13.02872 -12.98148 -12.85487 -12.79699 -12.44013 -12.26293 -12.03852 -11.87306 -11.80766 -11.68208 -11.39982 -11.24852 -11.19981 -10.81996 -10.53272 -8.99509 -8.19841 -6.31280 -0.86813 1.39541 1.42826 1.50664 1.90689 2.40139 2.78944 3.07998 3.09312 3.13481 3.54798 3.67172 4.04589 4.12669 4.16319 4.18203 4.26067 4.37106 4.44463 4.52815 4.60240 4.75071 4.76566 4.81643 4.86774 4.95740 5.05180 5.12712 5.15821 5.25267 5.30389 5.44525 5.46696 5.68906 5.80280 6.12916 6.37082 6.54629 6.86142 7.37850 8.92011 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.036522 B = 0.003710 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.486125 B = 7544.749823 C = 7594.332436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.411 3.589 3 O -0.988 6.988 4 O -0.986 6.986 5 C -0.545 4.545 6 H 0.169 0.831 7 C -0.106 4.106 8 C -0.106 4.106 9 C 0.059 3.941 10 N -0.562 5.562 11 C 0.083 3.917 12 C 0.036 3.964 13 C -0.548 4.548 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.074 3.926 22 C -0.115 4.115 23 H 0.153 0.847 24 H 0.139 0.861 25 H 0.161 0.839 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.060 0.940 34 H -0.012 1.012 35 H -0.004 1.004 36 H 0.264 0.736 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 -10.395 -14.312 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.601 3.399 3 O -0.986 6.986 4 O -0.983 6.983 5 C -0.655 4.655 6 H 0.186 0.814 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.068 4.068 10 N -0.287 5.287 11 C -0.044 4.044 12 C -0.001 4.001 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.056 4.056 22 C -0.154 4.154 23 H 0.171 0.829 24 H 0.157 0.843 25 H 0.179 0.821 26 H 0.084 0.916 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.007 0.993 35 H 0.014 0.986 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.132 -9.509 -15.145 22.186 hybrid contribution 0.560 -0.495 1.827 1.974 sum -12.572 -10.004 -13.318 20.869 Atomic orbital electron populations 1.30120 1.21084 1.14372 1.13361 1.07932 0.80523 0.74352 0.77134 1.93541 1.81220 1.36784 1.87026 1.93527 1.81392 1.67594 1.55758 1.29018 1.04206 1.13770 1.18470 0.81372 1.21430 1.00552 0.98757 0.93703 1.21324 0.96935 1.00961 0.95239 1.22441 0.88942 0.99552 0.95899 1.60618 1.02347 1.52426 1.13350 1.22026 0.92485 0.97147 0.92720 1.18916 0.95324 0.93094 0.92783 1.21622 1.11225 1.10724 1.15023 0.92301 1.25947 0.99048 0.94863 0.99694 1.70102 1.37070 1.14401 1.35505 0.85504 0.79261 0.77881 0.78401 1.19309 1.20769 1.19069 1.21686 1.00968 0.92962 0.89997 1.20301 0.93141 1.02895 0.99053 0.82908 0.84259 0.82061 0.91558 0.86847 0.88925 0.89862 0.93475 0.95778 0.96154 0.92154 0.99317 0.98605 0.92774 0.91871 0.91354 0.91874 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.14 10.01 113.37 1.13 -3.01 16 2 S 2.41 43.10 4.83 -56.49 -0.27 42.82 16 3 O -0.99 -28.04 17.96 -127.37 -2.29 -30.33 16 4 O -0.99 -24.30 18.10 -127.37 -2.30 -26.60 16 5 C -0.54 -9.02 2.19 28.93 0.06 -8.96 16 6 H 0.17 1.48 7.59 -2.40 -0.02 1.46 16 7 C -0.11 -1.85 4.94 30.31 0.15 -1.71 16 8 C -0.11 -2.01 5.28 30.11 0.16 -1.85 16 9 C 0.06 1.83 4.79 86.41 0.41 2.24 16 10 N -0.56 -19.60 4.02 -896.13 -3.61 -23.21 16 11 C 0.08 3.55 4.74 86.30 0.41 3.96 16 12 C 0.04 1.96 4.81 29.85 0.14 2.11 16 13 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 0.15 5.46 84.65 0.46 0.61 16 16 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 17 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 C 0.07 1.97 5.41 87.12 0.47 2.44 16 22 C -0.11 -2.74 4.53 28.74 0.13 -2.61 16 23 H 0.15 0.49 6.31 -2.39 -0.02 0.48 16 24 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.16 0.09 8.14 -2.39 -0.02 0.07 16 26 H 0.07 1.66 7.79 -2.39 -0.02 1.65 16 27 H 0.11 0.93 5.49 -2.38 -0.01 0.91 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.20 6.66 -2.39 -0.02 1.18 16 30 H 0.05 1.76 6.97 -2.39 -0.02 1.74 16 31 H 0.02 0.76 7.95 -2.39 -0.02 0.74 16 32 H 0.02 0.85 8.04 -2.39 -0.02 0.83 16 33 H 0.06 2.55 7.79 -2.39 -0.02 2.53 16 34 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.00 -0.25 6.72 -2.39 -0.02 -0.27 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.06 1.39 6.79 -2.39 -0.02 1.37 16 38 H 0.07 1.84 7.40 -2.39 -0.02 1.82 16 39 H 0.06 1.88 7.99 -2.39 -0.02 1.86 16 40 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 Total: -1.00 -81.74 320.55 -1.38 -83.12 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: 1.01 Total: 2.87 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 3.77 Total: -38.23 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -3.32 Total: -80.34 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -4.59 Total: -56.93 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 43.10 SS G_CDS: -0.27 Total: 42.82 kcal Total: -81.74 -1.38 -83.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321201736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.270 kcal (2) G-P(sol) polarization free energy of solvation -81.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds