Wall clock time and date at job start Mon Mar 30 2020 01:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42100 * 108.58311 * 2 1 4 4 O 1.42108 * 108.58158 * 228.97549 * 2 1 3 5 5 C 1.81399 * 101.92386 * 114.48895 * 2 1 3 6 6 H 1.08999 * 109.56888 * 300.25156 * 5 2 1 7 7 C 1.50462 * 109.67807 * 60.56424 * 5 2 1 8 8 C 1.54291 * 113.03641 * 212.03012 * 7 5 2 9 9 C 1.54067 * 112.28639 * 318.30489 * 8 7 5 10 10 N 1.44266 * 111.98378 * 318.91202 * 9 8 7 11 11 C 1.46903 * 110.99996 * 219.31070 * 10 9 8 12 12 C 1.53002 * 109.47174 * 302.66797 * 11 10 9 13 13 C 1.50697 * 109.47049 * 185.03021 * 12 11 10 14 14 H 1.08005 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99719 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00229 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99588 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47694 * 359.97438 * 17 15 13 19 19 H 1.48508 * 109.46867 * 120.00141 * 17 15 13 20 20 H 1.48508 * 109.47318 * 239.99507 * 17 15 13 21 21 C 1.47805 * 109.46274 * 96.43677 * 10 9 8 22 22 C 1.45863 * 112.91917 * 276.74295 * 21 10 9 23 23 H 1.08994 * 109.46919 * 305.51545 * 1 2 3 24 24 H 1.09003 * 109.46962 * 65.51188 * 1 2 3 25 25 H 1.09001 * 109.47308 * 185.51051 * 1 2 3 26 26 H 1.08997 * 108.76889 * 332.94924 * 7 5 2 27 27 H 1.09002 * 108.76974 * 91.23000 * 7 5 2 28 28 H 1.09005 * 108.91677 * 79.02600 * 8 7 5 29 29 H 1.09001 * 108.92078 * 197.57846 * 8 7 5 30 30 H 1.09008 * 108.97892 * 198.26594 * 9 8 7 31 31 H 1.09003 * 108.97846 * 79.56166 * 9 8 7 32 32 H 1.08999 * 109.47305 * 62.66700 * 11 10 9 33 33 H 1.09004 * 109.47046 * 182.66752 * 11 10 9 34 34 H 1.08998 * 109.46955 * 305.02668 * 12 11 10 35 35 H 1.08992 * 109.46986 * 65.02488 * 12 11 10 36 36 H 0.97000 * 120.00246 * 179.97438 * 16 15 13 37 37 H 1.09002 * 108.79451 * 37.62885 * 21 10 9 38 38 H 1.08999 * 108.79447 * 155.96770 * 21 10 9 39 39 H 1.08995 * 109.05482 * 181.87040 * 22 21 10 40 40 H 1.08997 * 109.05088 * 300.85042 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.7579 -0.1207 2.4053 7 6 1.6122 -2.1237 1.6858 8 6 1.1682 -2.5214 3.1089 9 6 2.1774 -2.0719 4.1828 10 7 3.5418 -2.2775 3.7615 11 6 4.3708 -2.7546 4.8765 12 6 4.3026 -1.7503 6.0288 13 6 5.2478 -2.1759 7.1226 14 1 5.8379 -3.0731 7.0076 15 6 5.3586 -1.4203 8.2706 16 7 4.6397 -0.3280 8.4108 17 14 6.5297 -1.9483 9.6267 18 1 7.2166 -3.2028 9.2272 19 1 7.5381 -0.8817 9.8529 20 1 5.7652 -2.1801 10.8786 21 6 4.0794 -1.0195 3.2021 22 6 3.7200 -0.8210 1.8024 23 1 -0.3633 0.5970 0.8364 24 1 -0.3633 0.4260 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 0.7502 -2.1796 1.0210 27 1 2.3649 -2.8340 1.3437 28 1 0.2016 -2.0633 3.3185 29 1 1.0613 -3.6051 3.1559 30 1 1.9991 -2.6392 5.0964 31 1 2.0261 -1.0125 4.3901 32 1 4.0016 -3.7224 5.2157 33 1 5.4038 -2.8561 4.5437 34 1 4.5870 -0.7623 5.6669 35 1 3.2860 -1.7151 6.4203 36 1 4.7173 0.2033 9.2186 37 1 3.6945 -0.1830 3.7855 38 1 5.1661 -1.0344 3.2852 39 1 4.1741 0.1036 1.4462 40 1 4.1035 -1.6551 1.2149 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321201737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:41 Heat of formation + Delta-G solvation = -101.246606 kcal Electronic energy + Delta-G solvation = -20328.482993 eV Core-core repulsion = 17269.229699 eV Total energy + Delta-G solvation = -3059.253294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42604 -37.98523 -37.00891 -36.48377 -34.76569 -33.50654 -31.42502 -30.24997 -27.96362 -26.16186 -25.60640 -23.34777 -21.69697 -20.32001 -19.63295 -18.67836 -17.98575 -17.09305 -16.99205 -16.56784 -16.45774 -16.06662 -15.63443 -15.32396 -14.82976 -14.38148 -14.10728 -13.92555 -13.84425 -13.66620 -13.46601 -13.13902 -13.07781 -12.98353 -12.94233 -12.81778 -12.49557 -12.08756 -12.06268 -11.85108 -11.81043 -11.68019 -11.46395 -11.40821 -11.22402 -10.87557 -10.58264 -9.13821 -8.23467 -6.35348 -0.87744 1.37151 1.38132 1.51070 1.88936 2.37644 2.74243 3.02496 3.09476 3.14580 3.44099 3.78880 4.02125 4.11205 4.19691 4.22450 4.32897 4.35074 4.39133 4.45910 4.61830 4.65834 4.88133 4.92193 4.95203 4.96877 5.01989 5.08790 5.13922 5.23281 5.37227 5.42209 5.46090 5.57313 5.73099 6.02615 6.29443 6.38218 6.82617 7.34448 8.87330 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.037396 B = 0.003881 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.572603 B = 7212.921418 C = 7386.805426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.424 3.576 3 O -0.989 6.989 4 O -0.975 6.975 5 C -0.560 4.560 6 H 0.146 0.854 7 C -0.094 4.094 8 C -0.098 4.098 9 C 0.048 3.952 10 N -0.520 5.520 11 C 0.071 3.929 12 C 0.001 3.999 13 C -0.542 4.542 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.963 3.037 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.278 1.278 21 C 0.060 3.940 22 C -0.094 4.094 23 H 0.151 0.849 24 H 0.143 0.857 25 H 0.157 0.843 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.062 0.938 34 H -0.009 1.009 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.025 0.975 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 -1.902 -15.845 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.612 3.388 3 O -0.986 6.986 4 O -0.973 6.973 5 C -0.670 4.670 6 H 0.164 0.836 7 C -0.133 4.133 8 C -0.137 4.137 9 C -0.081 4.081 10 N -0.243 5.243 11 C -0.057 4.057 12 C -0.037 4.037 13 C -0.580 4.580 14 H 0.079 0.921 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.788 3.212 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.069 4.069 22 C -0.132 4.132 23 H 0.170 0.830 24 H 0.161 0.839 25 H 0.175 0.825 26 H 0.114 0.886 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.010 0.990 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.958 -1.833 -16.804 20.145 hybrid contribution 0.345 0.603 2.503 2.598 sum -10.613 -1.230 -14.301 17.851 Atomic orbital electron populations 1.30103 1.21221 1.14139 1.13555 1.07630 0.80382 0.73976 0.76825 1.93533 1.81409 1.36654 1.86993 1.93529 1.81052 1.67283 1.55393 1.29995 1.04608 1.09817 1.22540 0.83631 1.21065 1.01561 0.92131 0.98500 1.21916 0.97232 1.01981 0.92562 1.21977 0.89299 0.98995 0.97808 1.62016 1.02470 1.28703 1.31074 1.22222 0.96723 0.97653 0.89101 1.19578 0.95379 0.94653 0.94089 1.21669 1.24061 1.09694 1.02623 0.92121 1.25940 0.97622 0.94877 1.01140 1.70093 1.42248 1.16517 1.28456 0.85429 0.78603 0.78597 0.78603 1.18520 1.20546 1.20360 1.20840 0.99793 0.90814 0.95445 1.20391 0.91689 1.03377 0.97788 0.83038 0.83891 0.82473 0.88631 0.90482 0.89528 0.90845 0.93317 0.95454 0.91554 0.91966 0.99043 0.98795 0.92838 0.95711 0.92008 0.90425 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.71 10.25 113.37 1.16 -3.55 16 2 S 2.42 43.79 4.74 -56.49 -0.27 43.52 16 3 O -0.99 -26.42 18.03 -127.37 -2.30 -28.72 16 4 O -0.98 -24.14 17.97 -127.37 -2.29 -26.43 16 5 C -0.56 -10.79 2.25 30.28 0.07 -10.72 16 6 H 0.15 2.51 7.15 -2.39 -0.02 2.49 16 7 C -0.09 -1.62 4.82 30.21 0.15 -1.47 16 8 C -0.10 -1.95 6.14 31.39 0.19 -1.75 16 9 C 0.05 1.47 4.09 87.16 0.36 1.83 16 10 N -0.52 -17.49 4.45 -911.79 -4.06 -21.55 16 11 C 0.07 2.89 4.99 86.30 0.43 3.32 16 12 C 0.00 0.07 4.42 29.85 0.13 0.20 16 13 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 17 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.06 1.94 3.95 83.94 0.33 2.27 16 22 C -0.09 -2.40 4.92 28.92 0.14 -2.25 16 23 H 0.15 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.16 0.43 6.51 -2.39 -0.02 0.42 16 26 H 0.10 0.86 5.71 -2.39 -0.01 0.85 16 27 H 0.08 1.55 7.38 -2.39 -0.02 1.54 16 28 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.67 6.86 -2.38 -0.02 1.66 16 31 H 0.03 0.89 6.51 -2.39 -0.02 0.87 16 32 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 33 H 0.06 2.53 7.93 -2.38 -0.02 2.51 16 34 H -0.01 -0.49 6.89 -2.39 -0.02 -0.51 16 35 H -0.01 -0.35 6.90 -2.39 -0.02 -0.36 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 37 H 0.02 0.89 6.77 -2.39 -0.02 0.87 16 38 H 0.06 2.13 7.67 -2.39 -0.02 2.12 16 39 H 0.08 1.90 7.95 -2.39 -0.02 1.88 16 40 H 0.09 2.22 7.58 -2.39 -0.02 2.20 16 Total: -1.00 -76.71 318.27 -1.93 -78.64 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.01 Total: 6.37 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 3.66 Total: -41.80 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.77 Total: -77.65 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -4.59 Total: -55.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 43.79 SS G_CDS: -0.27 Total: 43.52 kcal Total: -76.71 -1.93 -78.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321201737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.610 kcal (2) G-P(sol) polarization free energy of solvation -76.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds