Wall clock time and date at job start Mon Mar 30 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47119 * 274.98174 * 3 2 1 5 5 H 1.48492 * 109.47449 * 34.98046 * 3 2 1 6 6 H 1.48502 * 109.46940 * 154.98423 * 3 2 1 7 7 C 1.40026 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99829 * 186.29096 * 7 2 1 9 9 C 1.41316 * 120.00015 * 6.29645 * 7 2 1 10 10 C 1.40584 * 119.78633 * 173.70181 * 9 7 2 11 11 C 1.38349 * 119.14876 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.68095 * 359.75307 * 11 10 9 13 13 C 1.39763 * 119.48824 * 0.46988 * 12 11 10 14 14 N 1.38822 * 119.57986 * 179.79172 * 13 12 11 15 15 C 1.46497 * 120.00127 * 359.73085 * 14 13 12 16 16 C 1.53008 * 109.46841 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47064 * 180.02562 * 16 15 14 18 18 C 1.34769 * 119.99920 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00276 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99826 * 179.97438 * 18 17 16 21 21 C 1.52998 * 117.50118 * 248.74732 * 20 18 17 22 22 C 1.53002 * 117.49800 * 180.08708 * 20 18 17 23 23 N 1.31979 * 120.82913 * 359.51773 * 13 12 11 24 24 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.42536 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.65930 * 180.02562 * 11 10 9 27 27 H 1.07997 * 120.25841 * 180.26924 * 12 11 10 28 28 H 0.97001 * 119.99961 * 179.72791 * 14 13 12 29 29 H 1.09003 * 109.47554 * 60.00263 * 15 14 13 30 30 H 1.08992 * 109.47327 * 299.99396 * 15 14 13 31 31 H 1.09001 * 109.47462 * 299.99841 * 16 15 14 32 32 H 1.09003 * 109.47042 * 60.00251 * 16 15 14 33 33 H 0.97001 * 119.99689 * 0.02562 * 17 16 15 34 34 H 1.09003 * 115.54746 * 34.41997 * 20 18 17 35 35 H 1.09003 * 117.49815 * 0.02562 * 21 20 18 36 36 H 1.09000 * 117.50065 * 145.01855 * 21 20 18 37 37 H 1.09002 * 117.49642 * 214.98089 * 22 20 18 38 38 H 1.08996 * 117.49762 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0076 -1.2126 0.0005 8 1 3.0828 -1.2153 0.1030 9 6 1.3075 -2.4329 -0.1331 10 6 2.0213 -3.6367 -0.2655 11 6 1.3226 -4.8238 -0.3950 12 6 -0.0632 -4.7846 -0.3844 13 6 -0.7158 -3.5556 -0.2543 14 7 -2.1034 -3.5137 -0.2478 15 6 -2.8742 -4.7521 -0.3829 16 6 -4.3693 -4.4290 -0.3448 17 7 -5.1402 -5.6675 -0.4793 18 6 -6.4873 -5.6268 -0.4729 19 8 -7.0614 -4.5648 -0.3564 20 6 -7.2803 -6.9008 -0.6118 21 6 -8.0721 -7.1026 -1.9053 22 6 -8.8061 -6.7881 -0.5994 23 7 -0.0294 -2.4349 -0.1320 24 1 -0.4850 0.8400 -0.0004 25 1 3.1014 -3.6350 -0.2660 26 1 1.8462 -5.7627 -0.4977 27 1 -0.6341 -5.6964 -0.4793 28 1 -2.5626 -2.6645 -0.1539 29 1 -2.6274 -5.4252 0.4382 30 1 -2.6297 -5.2307 -1.3311 31 1 -4.6136 -3.9506 0.6037 32 1 -4.6165 -3.7558 -1.1657 33 1 -4.6810 -6.5168 -0.5728 34 1 -6.8370 -7.7831 -0.1501 35 1 -8.0191 -6.3142 -2.6561 36 1 -8.1501 -8.1178 -2.2945 37 1 -9.3666 -7.5965 -0.1299 38 1 -9.2363 -5.7926 -0.4903 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324084765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:04 Heat of formation + Delta-G solvation = 24.862920 kcal Electronic energy + Delta-G solvation = -19814.006709 eV Core-core repulsion = 16657.070734 eV Total energy + Delta-G solvation = -3156.935975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08937 -38.32811 -36.74878 -35.78599 -34.24033 -33.16806 -30.55713 -29.79816 -27.68578 -25.37940 -24.55692 -22.75718 -22.43637 -21.32313 -20.65702 -20.01832 -17.74203 -17.33624 -16.61832 -15.79178 -15.74314 -15.21346 -14.80225 -14.74292 -14.30480 -14.14050 -13.93598 -13.18599 -12.90560 -12.78018 -12.59714 -12.04652 -11.87918 -11.68783 -11.47503 -11.18116 -10.99300 -10.94231 -10.82549 -10.62804 -10.46050 -10.05889 -9.92549 -9.51144 -9.21981 -8.92724 -7.93481 -7.53006 -6.57501 -6.34803 -4.48431 2.31909 2.85171 2.86519 3.11881 3.15232 3.21052 3.28788 3.56297 3.98524 4.21423 4.43481 4.53655 4.56811 4.79934 4.82363 4.93870 5.17534 5.27024 5.42580 5.53273 5.62391 5.81346 5.93769 5.95657 6.09881 6.12739 6.24576 6.53205 6.82328 6.86603 6.90869 7.23590 7.31874 7.56272 7.77826 7.88189 8.06258 8.14904 8.32457 8.63096 8.78689 9.08877 10.22463 10.38858 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028541 B = 0.003061 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.817055 B = 9144.125016 C =10021.333748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.412 3.588 14 N -0.737 5.737 15 C 0.134 3.866 16 C 0.109 3.891 17 N -0.721 5.721 18 C 0.541 3.459 19 O -0.540 6.540 20 C -0.195 4.195 21 C -0.153 4.153 22 C -0.149 4.149 23 N -0.531 5.531 24 H 0.270 0.730 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.398 0.602 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 -11.831 -1.864 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.057 4.057 12 C -0.394 4.394 13 C 0.172 3.828 14 N -0.375 5.375 15 C 0.008 3.992 16 C -0.015 4.015 17 N -0.373 5.373 18 C 0.328 3.672 19 O -0.417 6.417 20 C -0.216 4.216 21 C -0.191 4.191 22 C -0.186 4.186 23 N -0.253 5.253 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.233 0.767 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.237 0.763 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.135 -10.312 -1.699 16.785 hybrid contribution 1.011 -0.313 -0.087 1.062 sum -12.124 -10.624 -1.786 16.219 Atomic orbital electron populations 1.70146 1.07177 1.27451 1.28899 1.26060 0.94859 1.00974 0.93554 0.86350 0.80573 0.81090 0.78981 1.19564 1.20220 1.18554 1.19594 0.94596 0.89512 1.42889 0.89807 1.18204 0.86782 0.91844 0.86677 1.21551 0.98483 0.93810 1.19912 1.20597 0.93438 0.96363 0.95259 1.20580 0.94612 0.95726 1.28473 1.18445 0.83888 0.90393 0.90045 1.43873 1.02933 1.07259 1.83432 1.21075 0.88382 0.88741 1.01042 1.21487 0.90459 0.86536 1.03067 1.45734 1.06090 1.10702 1.74745 1.19650 0.81996 0.89757 0.75837 1.90716 1.70168 1.31534 1.49278 1.22196 0.95346 0.98124 1.05936 1.22960 1.01942 1.03482 0.90675 1.22969 0.91321 1.04282 1.00019 1.68185 1.07954 1.24177 1.24959 0.91866 0.88637 0.88894 0.89261 0.76707 0.92484 0.92483 0.90736 0.90772 0.76274 0.85750 0.88188 0.87729 0.87901 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.12 11.49 55.55 0.64 -18.48 16 2 C 0.07 1.82 5.49 -17.34 -0.10 1.73 16 3 Si 0.91 18.83 29.56 -169.99 -5.03 13.80 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.43 -11.78 9.13 -37.74 -0.34 -12.13 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.29 8.14 6.54 -85.00 -0.56 7.59 16 10 C -0.31 -7.94 9.83 -38.66 -0.38 -8.32 16 11 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 12 C -0.37 -8.34 9.34 -38.86 -0.36 -8.70 16 13 C 0.41 9.98 7.65 -155.32 -1.19 8.80 16 14 N -0.74 -14.49 5.72 -60.40 -0.35 -14.84 16 15 C 0.13 1.95 5.00 -4.04 -0.02 1.93 16 16 C 0.11 1.41 5.79 -4.04 -0.02 1.39 16 17 N -0.72 -7.69 5.56 -60.28 -0.33 -8.02 16 18 C 0.54 6.53 7.61 -10.99 -0.08 6.45 16 19 O -0.54 -8.79 16.26 5.56 0.09 -8.70 16 20 C -0.19 -1.62 6.19 -91.77 -0.57 -2.19 16 21 C -0.15 -1.09 10.24 -26.69 -0.27 -1.37 16 22 C -0.15 -1.16 10.05 -26.69 -0.27 -1.43 16 23 N -0.53 -14.71 7.92 -10.33 -0.08 -14.79 16 24 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 25 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.09 1.76 6.68 -52.49 -0.35 1.41 16 28 H 0.40 7.89 8.59 -40.82 -0.35 7.54 16 29 H 0.06 0.80 7.91 -51.93 -0.41 0.39 16 30 H 0.06 0.81 7.93 -51.93 -0.41 0.39 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.40 3.12 8.47 -40.82 -0.35 2.77 16 34 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 1.04 7.67 -51.93 -0.40 0.64 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -32.44 329.19 -9.86 -42.30 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.20 Total: 11.16 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.56 Total: -7.40 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.12 Total: -56.13 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.44 -9.86 -42.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324084765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.161 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds