Wall clock time and date at job start Mon Mar 30 2020 02:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47119 * 274.98174 * 3 2 1 5 5 H 1.48492 * 109.47449 * 34.98046 * 3 2 1 6 6 H 1.48502 * 109.46940 * 154.98423 * 3 2 1 7 7 C 1.40026 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99829 * 186.29096 * 7 2 1 9 9 C 1.41316 * 120.00015 * 6.29645 * 7 2 1 10 10 C 1.40584 * 119.78633 * 173.70181 * 9 7 2 11 11 C 1.38349 * 119.14876 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.68095 * 359.75307 * 11 10 9 13 13 C 1.39763 * 119.48824 * 0.46988 * 12 11 10 14 14 N 1.38822 * 119.57986 * 179.79172 * 13 12 11 15 15 C 1.46497 * 120.00127 * 359.73085 * 14 13 12 16 16 C 1.53008 * 109.46841 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47064 * 180.02562 * 16 15 14 18 18 C 1.34769 * 119.99920 * 180.02562 * 17 16 15 19 19 O 1.21281 * 120.00276 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99826 * 179.97438 * 18 17 16 21 21 C 1.52998 * 117.50118 * 248.74732 * 20 18 17 22 22 C 1.53002 * 117.49800 * 180.08708 * 20 18 17 23 23 N 1.31979 * 120.82913 * 359.51773 * 13 12 11 24 24 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.42536 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.65930 * 180.02562 * 11 10 9 27 27 H 1.07997 * 120.25841 * 180.26924 * 12 11 10 28 28 H 0.97001 * 119.99961 * 179.72791 * 14 13 12 29 29 H 1.09003 * 109.47554 * 60.00263 * 15 14 13 30 30 H 1.08992 * 109.47327 * 299.99396 * 15 14 13 31 31 H 1.09001 * 109.47462 * 299.99841 * 16 15 14 32 32 H 1.09003 * 109.47042 * 60.00251 * 16 15 14 33 33 H 0.97001 * 119.99689 * 0.02562 * 17 16 15 34 34 H 1.09003 * 115.54746 * 34.41997 * 20 18 17 35 35 H 1.09003 * 117.49815 * 0.02562 * 21 20 18 36 36 H 1.09000 * 117.50065 * 145.01855 * 21 20 18 37 37 H 1.09002 * 117.49642 * 214.98089 * 22 20 18 38 38 H 1.08996 * 117.49762 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0076 -1.2126 0.0005 8 1 3.0828 -1.2153 0.1030 9 6 1.3075 -2.4329 -0.1331 10 6 2.0213 -3.6367 -0.2655 11 6 1.3226 -4.8238 -0.3950 12 6 -0.0632 -4.7846 -0.3844 13 6 -0.7158 -3.5556 -0.2543 14 7 -2.1034 -3.5137 -0.2478 15 6 -2.8742 -4.7521 -0.3829 16 6 -4.3693 -4.4290 -0.3448 17 7 -5.1402 -5.6675 -0.4793 18 6 -6.4873 -5.6268 -0.4729 19 8 -7.0614 -4.5648 -0.3564 20 6 -7.2803 -6.9008 -0.6118 21 6 -8.0721 -7.1026 -1.9053 22 6 -8.8061 -6.7881 -0.5994 23 7 -0.0294 -2.4349 -0.1320 24 1 -0.4850 0.8400 -0.0004 25 1 3.1014 -3.6350 -0.2660 26 1 1.8462 -5.7627 -0.4977 27 1 -0.6341 -5.6964 -0.4793 28 1 -2.5626 -2.6645 -0.1539 29 1 -2.6274 -5.4252 0.4382 30 1 -2.6297 -5.2307 -1.3311 31 1 -4.6136 -3.9506 0.6037 32 1 -4.6165 -3.7558 -1.1657 33 1 -4.6810 -6.5168 -0.5728 34 1 -6.8370 -7.7831 -0.1501 35 1 -8.0191 -6.3142 -2.6561 36 1 -8.1501 -8.1178 -2.2945 37 1 -9.3666 -7.5965 -0.1299 38 1 -9.2363 -5.7926 -0.4903 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324084765.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:04 Heat of formation + Delta-G solvation = 3.054815 kcal Electronic energy + Delta-G solvation = -19814.952379 eV Core-core repulsion = 16657.070734 eV Total energy + Delta-G solvation = -3157.881645 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03670 -40.12861 -37.74843 -36.89655 -35.70910 -34.87537 -32.36183 -31.45004 -29.17875 -27.25849 -25.55078 -23.78491 -23.30960 -22.99314 -22.24015 -21.09556 -19.27366 -18.54162 -18.14021 -16.97013 -16.84778 -16.61998 -16.36117 -15.98627 -15.84761 -15.34082 -15.08230 -14.80285 -14.58066 -14.25219 -13.74692 -13.55865 -13.15517 -12.84262 -12.76660 -12.70598 -12.52242 -12.43605 -12.19209 -11.74198 -11.54657 -11.45514 -11.29578 -11.02535 -10.69398 -10.23212 -9.83854 -9.45017 -8.34032 -8.24400 -6.47832 1.05511 1.34620 1.41229 1.42452 1.55330 1.57649 1.85830 2.24681 2.82548 2.91716 2.93045 3.64494 3.77006 3.88725 3.96499 3.99332 4.09769 4.24056 4.33139 4.43540 4.71091 4.75368 4.83256 4.85734 4.93842 4.98918 5.01370 5.03745 5.10896 5.22779 5.29227 5.36802 5.71205 5.96714 6.05778 6.22148 6.46165 6.53865 6.80735 6.91334 7.16774 7.18850 8.33408 8.50569 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028541 B = 0.003061 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.817055 B = 9144.125016 C =10021.333748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.472 4.472 8 H 0.087 0.913 9 C 0.258 3.742 10 C -0.342 4.342 11 C -0.030 4.030 12 C -0.363 4.363 13 C 0.393 3.607 14 N -0.736 5.736 15 C 0.139 3.861 16 C 0.121 3.879 17 N -0.707 5.707 18 C 0.534 3.466 19 O -0.591 6.591 20 C -0.197 4.197 21 C -0.142 4.142 22 C -0.155 4.155 23 N -0.568 5.568 24 H 0.275 0.725 25 H 0.103 0.897 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.393 0.607 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.421 0.579 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 -14.050 -2.171 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.504 4.504 8 H 0.105 0.895 9 C 0.131 3.869 10 C -0.365 4.365 11 C -0.054 4.054 12 C -0.389 4.389 13 C 0.153 3.847 14 N -0.372 5.372 15 C 0.014 3.986 16 C -0.004 4.004 17 N -0.360 5.360 18 C 0.322 3.678 19 O -0.472 6.472 20 C -0.218 4.218 21 C -0.179 4.179 22 C -0.192 4.192 23 N -0.291 5.291 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.227 0.773 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.258 0.742 34 H 0.175 0.825 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.386 -12.608 -2.014 18.499 hybrid contribution 0.986 0.232 -0.006 1.013 sum -12.400 -12.376 -2.020 17.636 Atomic orbital electron populations 1.70247 1.08804 1.28673 1.29836 1.26970 0.95719 1.04417 0.92534 0.85150 0.79160 0.75946 0.79123 1.19022 1.19415 1.17823 1.19942 0.95037 0.90643 1.44782 0.89494 1.18680 0.87541 0.93234 0.87474 1.21717 0.99076 0.94173 1.21557 1.21044 0.93809 0.97118 0.93415 1.20982 0.94948 0.96384 1.26553 1.18906 0.85499 0.90503 0.89789 1.44064 1.01756 1.08909 1.82475 1.21222 0.88345 0.86849 1.02156 1.21170 0.89864 0.87433 1.01916 1.45592 1.05800 1.10631 1.73968 1.20409 0.82239 0.90525 0.74578 1.90697 1.71113 1.33751 1.51605 1.22280 0.95117 0.96994 1.07402 1.23064 1.00389 1.04624 0.89815 1.23040 0.91199 1.03911 1.01075 1.68138 1.08344 1.26232 1.26383 0.91400 0.87907 0.84971 0.85668 0.77283 0.91048 0.91106 0.92017 0.92095 0.74169 0.82484 0.89729 0.84672 0.85251 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.57 11.49 21.84 0.25 -41.32 16 2 C 0.03 1.32 5.49 85.29 0.47 1.79 16 3 Si 0.99 39.30 29.56 68.60 2.03 41.33 16 4 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.47 -26.46 9.13 23.46 0.21 -26.25 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.26 14.79 6.54 40.19 0.26 15.05 16 10 C -0.34 -17.37 9.83 22.87 0.22 -17.14 16 11 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 12 C -0.36 -15.68 9.34 22.73 0.21 -15.47 16 13 C 0.39 19.00 7.65 133.40 1.02 20.02 16 14 N -0.74 -28.73 5.72 -345.00 -1.97 -30.70 16 15 C 0.14 3.78 5.00 86.38 0.43 4.22 16 16 C 0.12 3.06 5.79 86.38 0.50 3.56 16 17 N -0.71 -13.85 5.56 -463.03 -2.57 -16.42 16 18 C 0.53 12.38 7.61 87.66 0.67 13.05 16 19 O -0.59 -19.64 16.26 -3.03 -0.05 -19.69 16 20 C -0.20 -2.80 6.19 -11.54 -0.07 -2.87 16 21 C -0.14 -1.67 10.24 30.62 0.31 -1.36 16 22 C -0.15 -2.16 10.05 30.62 0.31 -1.85 16 23 N -0.57 -32.26 7.92 -186.60 -1.48 -33.73 16 24 H 0.28 13.79 8.29 -92.71 -0.77 13.02 16 25 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 26 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 27 H 0.13 4.41 6.68 -2.91 -0.02 4.40 16 28 H 0.39 15.98 8.59 -92.71 -0.80 15.18 16 29 H 0.07 1.79 7.91 -2.39 -0.02 1.77 16 30 H 0.07 1.78 7.93 -2.39 -0.02 1.77 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.42 5.21 8.47 -92.71 -0.79 4.42 16 34 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.60 7.67 -2.39 -0.02 1.58 16 Total: -1.00 -73.62 329.19 0.49 -73.13 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.49 Total: 35.74 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 4.78 Total: -8.33 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -5.77 Total: -122.17 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -73.62 0.49 -73.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324084765.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.180 kcal (2) G-P(sol) polarization free energy of solvation -73.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds