Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47119 * 274.98174 * 3 2 1 5 5 H 1.48492 * 109.47449 * 34.98046 * 3 2 1 6 6 H 1.48502 * 109.46940 * 154.98423 * 3 2 1 7 7 C 1.40026 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99829 * 186.29096 * 7 2 1 9 9 C 1.41316 * 120.00015 * 6.29645 * 7 2 1 10 10 C 1.40584 * 119.78633 * 173.70181 * 9 7 2 11 11 C 1.38349 * 119.14876 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.68095 * 359.75307 * 11 10 9 13 13 C 1.39763 * 119.48824 * 0.46988 * 12 11 10 14 14 N 1.38822 * 119.57986 * 179.79172 * 13 12 11 15 15 C 1.46497 * 120.00127 * 359.73085 * 14 13 12 16 16 C 1.50702 * 109.46849 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00442 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99955 * 180.02562 * 16 15 14 19 19 C 1.46494 * 120.00214 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47300 * 179.97438 * 19 18 16 21 21 C 1.52998 * 117.49785 * 243.62088 * 20 19 18 22 22 C 1.52998 * 60.00063 * 252.51292 * 21 20 19 23 23 N 1.31979 * 120.82913 * 359.51773 * 13 12 11 24 24 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.42536 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.65930 * 180.02562 * 11 10 9 27 27 H 1.07997 * 120.25841 * 180.26924 * 12 11 10 28 28 H 0.97001 * 119.99961 * 179.72791 * 14 13 12 29 29 H 1.09003 * 109.47554 * 60.00263 * 15 14 13 30 30 H 1.08992 * 109.47327 * 299.99396 * 15 14 13 31 31 H 0.96999 * 119.99765 * 359.97438 * 18 16 15 32 32 H 1.09001 * 109.47143 * 299.99592 * 19 18 16 33 33 H 1.09003 * 109.47359 * 59.99357 * 19 18 16 34 34 H 1.08996 * 115.54880 * 29.32906 * 20 19 18 35 35 H 1.09000 * 117.49805 * 359.97438 * 21 20 19 36 36 H 1.08996 * 117.50179 * 145.02077 * 21 20 19 37 37 H 1.09008 * 117.49618 * 252.51430 * 22 21 20 38 38 H 1.08998 * 117.50278 * 107.49264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0076 -1.2126 0.0005 8 1 3.0828 -1.2153 0.1030 9 6 1.3075 -2.4329 -0.1331 10 6 2.0213 -3.6367 -0.2655 11 6 1.3226 -4.8238 -0.3950 12 6 -0.0632 -4.7846 -0.3844 13 6 -0.7158 -3.5556 -0.2543 14 7 -2.1034 -3.5137 -0.2478 15 6 -2.8742 -4.7521 -0.3829 16 6 -4.3468 -4.4338 -0.3454 17 8 -4.7160 -3.2857 -0.2178 18 7 -5.2535 -5.4253 -0.4525 19 6 -6.6849 -5.1159 -0.4166 20 6 -7.4900 -6.4093 -0.5575 21 6 -8.3761 -6.5584 -1.7958 22 6 -9.0113 -6.3124 -0.4258 23 7 -0.0294 -2.4349 -0.1320 24 1 -0.4850 0.8400 -0.0004 25 1 3.1014 -3.6350 -0.2660 26 1 1.8462 -5.7627 -0.4977 27 1 -0.6341 -5.6964 -0.4793 28 1 -2.5626 -2.6645 -0.1539 29 1 -2.6274 -5.4252 0.4382 30 1 -2.6297 -5.2307 -1.3311 31 1 -4.9582 -6.3436 -0.5541 32 1 -6.9294 -4.6368 0.5315 33 1 -6.9320 -4.4431 -1.2379 34 1 -7.0077 -7.3076 -0.1722 35 1 -8.3859 -5.7349 -2.5099 36 1 -8.4769 -7.5550 -2.2256 37 1 -9.5298 -7.1472 0.0458 38 1 -9.4385 -5.3272 -0.2387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324085928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = 27.569510 kcal Electronic energy + Delta-G solvation = -19936.873012 eV Core-core repulsion = 16780.054404 eV Total energy + Delta-G solvation = -3156.818608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83090 -38.20047 -37.73277 -34.77413 -34.24211 -33.14313 -30.47444 -29.54213 -27.87942 -25.53302 -25.19816 -22.77043 -21.53293 -21.30989 -20.74034 -19.98697 -17.47474 -17.34099 -16.68485 -15.75012 -15.66802 -15.23397 -14.67244 -14.61963 -14.26888 -14.05618 -13.86694 -13.39088 -13.06148 -12.79765 -12.55212 -11.93565 -11.88820 -11.79046 -11.75856 -11.16510 -10.95266 -10.90537 -10.61828 -10.56637 -10.42216 -9.89506 -9.80303 -9.47346 -9.17684 -8.88672 -7.88672 -7.46135 -6.50990 -6.28188 -4.43502 2.64913 2.91239 2.91412 3.15639 3.19081 3.26405 3.33163 3.42122 4.03104 4.27197 4.31004 4.51318 4.57956 4.77302 4.87866 4.91191 5.25621 5.34922 5.47611 5.51251 5.56045 5.62202 5.72716 5.80463 6.09624 6.16222 6.29459 6.54880 6.88038 6.89169 6.94273 7.29161 7.35726 7.62060 7.82821 7.92413 8.17984 8.22429 8.38326 8.74469 8.84338 9.15067 10.28990 10.45154 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027730 B = 0.003256 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.511163 B = 8596.957988 C = 9506.772202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.434 4.434 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.031 4.031 12 C -0.372 4.372 13 C 0.414 3.586 14 N -0.729 5.729 15 C 0.126 3.874 16 C 0.509 3.491 17 O -0.529 6.529 18 N -0.731 5.731 19 C 0.151 3.849 20 C -0.170 4.170 21 C -0.177 4.177 22 C -0.172 4.172 23 N -0.530 5.530 24 H 0.271 0.729 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.408 0.592 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.402 0.598 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.810 -11.805 -1.613 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.156 4.156 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.466 4.466 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.398 4.398 13 C 0.174 3.826 14 N -0.370 5.370 15 C -0.004 4.004 16 C 0.295 3.705 17 O -0.404 6.404 18 N -0.385 5.385 19 C 0.027 3.973 20 C -0.188 4.188 21 C -0.214 4.214 22 C -0.209 4.209 23 N -0.252 5.252 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.246 0.754 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.723 -10.204 -1.441 17.971 hybrid contribution 0.706 -0.413 -0.152 0.832 sum -14.017 -10.617 -1.593 17.656 Atomic orbital electron populations 1.70155 1.07127 1.27518 1.28519 1.26074 0.94847 1.00963 0.93693 0.86357 0.80531 0.81186 0.78949 1.19588 1.20238 1.18578 1.19590 0.94563 0.89516 1.42923 0.89808 1.18212 0.86750 0.91856 0.86666 1.21544 0.98447 0.93821 1.20022 1.20581 0.93407 0.96333 0.95253 1.20582 0.94677 0.95621 1.28914 1.18431 0.83713 0.90426 0.90022 1.43848 1.02760 1.07291 1.83056 1.20743 0.86817 0.90107 1.02717 1.20881 0.88755 0.85265 0.75613 1.90722 1.81224 1.20419 1.48007 1.45878 1.06036 1.10491 1.76071 1.20860 0.79207 0.94800 1.02427 1.22466 0.93131 0.99330 1.03906 1.23102 1.03808 1.03326 0.91181 1.22961 0.94050 1.03549 1.00342 1.68184 1.07890 1.24189 1.24898 0.91792 0.88660 0.88898 0.89260 0.75407 0.90034 0.90036 0.76345 0.91031 0.91293 0.87079 0.88445 0.88590 0.88435 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.74 11.49 55.55 0.64 -19.11 16 2 C 0.07 1.84 5.49 -17.34 -0.10 1.75 16 3 Si 0.91 19.27 29.56 -169.99 -5.03 14.24 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.43 -12.02 9.13 -37.74 -0.34 -12.36 16 8 H 0.08 2.17 7.85 -52.49 -0.41 1.75 16 9 C 0.29 8.32 6.54 -85.00 -0.56 7.77 16 10 C -0.32 -8.07 9.83 -38.66 -0.38 -8.45 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.37 -8.53 9.34 -38.86 -0.36 -8.89 16 13 C 0.41 10.43 7.65 -155.32 -1.19 9.24 16 14 N -0.73 -15.78 5.69 -61.58 -0.35 -16.13 16 15 C 0.13 1.96 5.36 -5.19 -0.03 1.94 16 16 C 0.51 7.59 7.90 -10.98 -0.09 7.50 16 17 O -0.53 -10.18 15.67 5.55 0.09 -10.09 16 18 N -0.73 -7.59 5.56 -60.29 -0.33 -7.93 16 19 C 0.15 1.46 5.96 -4.04 -0.02 1.44 16 20 C -0.17 -1.18 5.85 -90.62 -0.53 -1.71 16 21 C -0.18 -1.13 10.18 -26.73 -0.27 -1.40 16 22 C -0.17 -1.07 10.25 -26.73 -0.27 -1.34 16 23 N -0.53 -15.20 7.92 -10.33 -0.08 -15.28 16 24 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 25 H 0.10 2.26 8.06 -52.48 -0.42 1.83 16 26 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 27 H 0.09 1.74 6.68 -52.49 -0.35 1.39 16 28 H 0.41 9.59 7.56 -40.82 -0.31 9.28 16 29 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 30 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.40 2.91 8.40 -40.82 -0.34 2.57 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 34 H 0.11 0.65 8.04 -51.93 -0.42 0.24 16 35 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -33.18 328.08 -9.82 -43.00 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -5.15 Total: 12.00 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -4.54 Total: -5.65 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.13 Total: -58.44 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.18 -9.82 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324085928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.568 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds