Wall clock time and date at job start Mon Mar 30 2020 02:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86804 * 119.99791 * 2 1 4 4 H 1.48503 * 109.47119 * 274.98174 * 3 2 1 5 5 H 1.48492 * 109.47449 * 34.98046 * 3 2 1 6 6 H 1.48502 * 109.46940 * 154.98423 * 3 2 1 7 7 C 1.40026 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99829 * 186.29096 * 7 2 1 9 9 C 1.41316 * 120.00015 * 6.29645 * 7 2 1 10 10 C 1.40584 * 119.78633 * 173.70181 * 9 7 2 11 11 C 1.38349 * 119.14876 * 179.97438 * 10 9 7 12 12 C 1.38639 * 118.68095 * 359.75307 * 11 10 9 13 13 C 1.39763 * 119.48824 * 0.46988 * 12 11 10 14 14 N 1.38822 * 119.57986 * 179.79172 * 13 12 11 15 15 C 1.46497 * 120.00127 * 359.73085 * 14 13 12 16 16 C 1.50702 * 109.46849 * 179.97438 * 15 14 13 17 17 O 1.21283 * 120.00442 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99955 * 180.02562 * 16 15 14 19 19 C 1.46494 * 120.00214 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47300 * 179.97438 * 19 18 16 21 21 C 1.52998 * 117.49785 * 243.62088 * 20 19 18 22 22 C 1.52998 * 60.00063 * 252.51292 * 21 20 19 23 23 N 1.31979 * 120.82913 * 359.51773 * 13 12 11 24 24 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 25 25 H 1.08003 * 120.42536 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.65930 * 180.02562 * 11 10 9 27 27 H 1.07997 * 120.25841 * 180.26924 * 12 11 10 28 28 H 0.97001 * 119.99961 * 179.72791 * 14 13 12 29 29 H 1.09003 * 109.47554 * 60.00263 * 15 14 13 30 30 H 1.08992 * 109.47327 * 299.99396 * 15 14 13 31 31 H 0.96999 * 119.99765 * 359.97438 * 18 16 15 32 32 H 1.09001 * 109.47143 * 299.99592 * 19 18 16 33 33 H 1.09003 * 109.47359 * 59.99357 * 19 18 16 34 34 H 1.08996 * 115.54880 * 29.32906 * 20 19 18 35 35 H 1.09000 * 117.49805 * 359.97438 * 21 20 19 36 36 H 1.08996 * 117.50179 * 145.02077 * 21 20 19 37 37 H 1.09008 * 117.49618 * 252.51430 * 22 21 20 38 38 H 1.08998 * 117.50278 * 107.49264 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3836 2.1073 -1.3948 5 1 1.4955 2.6200 0.8026 6 1 3.5877 1.4121 0.5921 7 6 2.0076 -1.2126 0.0005 8 1 3.0828 -1.2153 0.1030 9 6 1.3075 -2.4329 -0.1331 10 6 2.0213 -3.6367 -0.2655 11 6 1.3226 -4.8238 -0.3950 12 6 -0.0632 -4.7846 -0.3844 13 6 -0.7158 -3.5556 -0.2543 14 7 -2.1034 -3.5137 -0.2478 15 6 -2.8742 -4.7521 -0.3829 16 6 -4.3468 -4.4338 -0.3454 17 8 -4.7160 -3.2857 -0.2178 18 7 -5.2535 -5.4253 -0.4525 19 6 -6.6849 -5.1159 -0.4166 20 6 -7.4900 -6.4093 -0.5575 21 6 -8.3761 -6.5584 -1.7958 22 6 -9.0113 -6.3124 -0.4258 23 7 -0.0294 -2.4349 -0.1320 24 1 -0.4850 0.8400 -0.0004 25 1 3.1014 -3.6350 -0.2660 26 1 1.8462 -5.7627 -0.4977 27 1 -0.6341 -5.6964 -0.4793 28 1 -2.5626 -2.6645 -0.1539 29 1 -2.6274 -5.4252 0.4382 30 1 -2.6297 -5.2307 -1.3311 31 1 -4.9582 -6.3436 -0.5541 32 1 -6.9294 -4.6368 0.5315 33 1 -6.9320 -4.4431 -1.2379 34 1 -7.0077 -7.3076 -0.1722 35 1 -8.3859 -5.7349 -2.5099 36 1 -8.4769 -7.5550 -2.2256 37 1 -9.5298 -7.1472 0.0458 38 1 -9.4385 -5.3272 -0.2387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324085928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:52 Heat of formation + Delta-G solvation = 5.024720 kcal Electronic energy + Delta-G solvation = -19937.850627 eV Core-core repulsion = 16780.054404 eV Total energy + Delta-G solvation = -3157.796224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03177 -39.97251 -38.48663 -36.45146 -35.27679 -35.01542 -32.34662 -31.26682 -29.15969 -27.30509 -26.56588 -23.41044 -23.25150 -22.40051 -22.05124 -21.24554 -19.27079 -18.78431 -17.66703 -17.23302 -16.86871 -16.60940 -16.34574 -16.02542 -15.62570 -15.17712 -14.90788 -14.82965 -14.67407 -14.21426 -14.13784 -13.52308 -13.50072 -12.86839 -12.71551 -12.56598 -12.41400 -12.37238 -12.21220 -11.73125 -11.51434 -11.31642 -11.18167 -10.96621 -10.70644 -10.14434 -9.83214 -9.42237 -8.33143 -8.22182 -6.47072 1.06846 1.35801 1.40636 1.48178 1.55683 1.58073 1.88007 2.25048 2.73271 2.88832 2.92965 3.68313 3.69805 3.98205 4.04924 4.09341 4.25100 4.30932 4.44715 4.45707 4.64076 4.69622 4.78585 4.80898 4.99286 5.02961 5.03291 5.11308 5.15886 5.25957 5.34666 5.40787 5.72141 5.98023 6.05741 6.23261 6.39199 6.57635 6.81107 6.92591 7.12291 7.19724 8.35761 8.52543 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027730 B = 0.003256 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.511163 B = 8596.957988 C = 9506.772202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.473 4.473 8 H 0.089 0.911 9 C 0.258 3.742 10 C -0.341 4.341 11 C -0.028 4.028 12 C -0.361 4.361 13 C 0.393 3.607 14 N -0.734 5.734 15 C 0.122 3.878 16 C 0.510 3.490 17 O -0.580 6.580 18 N -0.706 5.706 19 C 0.149 3.851 20 C -0.170 4.170 21 C -0.176 4.176 22 C -0.170 4.170 23 N -0.572 5.572 24 H 0.274 0.726 25 H 0.104 0.896 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.394 0.606 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.421 0.579 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 -14.126 -1.896 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.199 4.199 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.505 4.505 8 H 0.107 0.893 9 C 0.130 3.870 10 C -0.364 4.364 11 C -0.052 4.052 12 C -0.387 4.387 13 C 0.153 3.847 14 N -0.372 5.372 15 C -0.006 4.006 16 C 0.297 3.703 17 O -0.460 6.460 18 N -0.359 5.359 19 C 0.026 3.974 20 C -0.188 4.188 21 C -0.213 4.213 22 C -0.208 4.208 23 N -0.295 5.295 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.229 0.771 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.259 0.741 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.097 -12.634 -1.734 19.762 hybrid contribution 0.681 0.109 -0.081 0.695 sum -14.416 -12.525 -1.815 19.183 Atomic orbital electron populations 1.70285 1.08941 1.28615 1.29970 1.27030 0.95664 1.04622 0.92548 0.85133 0.79157 0.75833 0.79126 1.18983 1.19553 1.17570 1.19955 0.95058 0.90616 1.44843 0.89312 1.18700 0.87385 0.93383 0.87497 1.21725 0.99109 0.94139 1.21465 1.21060 0.93734 0.97145 0.93264 1.21015 0.95032 0.96203 1.26467 1.18904 0.85047 0.90765 0.90028 1.44060 1.01911 1.08828 1.82380 1.21062 0.86572 0.88075 1.04862 1.20822 0.89069 0.85142 0.75288 1.90713 1.81795 1.22645 1.50824 1.45686 1.05851 1.10599 1.73796 1.20898 0.78859 0.96339 1.01317 1.22396 0.93288 0.98272 1.04891 1.23165 1.03244 1.03882 0.91026 1.23058 0.93423 1.03981 1.00297 1.68115 1.08488 1.26488 1.26359 0.91543 0.87781 0.84622 0.85015 0.77082 0.87476 0.87553 0.74065 0.92227 0.92613 0.85271 0.89176 0.87147 0.86943 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -43.70 11.49 21.84 0.25 -43.45 16 2 C 0.02 1.23 5.49 85.29 0.47 1.70 16 3 Si 0.99 40.51 29.56 68.60 2.03 42.54 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.47 -27.10 9.13 23.46 0.21 -26.89 16 8 H 0.09 4.74 7.85 -2.91 -0.02 4.72 16 9 C 0.26 15.11 6.54 40.19 0.26 15.37 16 10 C -0.34 -17.48 9.83 22.87 0.22 -17.26 16 11 C -0.03 -1.23 10.15 22.39 0.23 -1.00 16 12 C -0.36 -15.68 9.34 22.73 0.21 -15.46 16 13 C 0.39 19.76 7.65 133.40 1.02 20.78 16 14 N -0.73 -31.77 5.69 -348.74 -1.99 -33.75 16 15 C 0.12 3.55 5.36 85.63 0.46 4.01 16 16 C 0.51 14.73 7.90 87.66 0.69 15.43 16 17 O -0.58 -22.84 15.67 -3.04 -0.05 -22.89 16 18 N -0.71 -13.28 5.56 -463.05 -2.57 -15.85 16 19 C 0.15 2.74 5.96 86.38 0.51 3.26 16 20 C -0.17 -1.97 5.85 -10.79 -0.06 -2.03 16 21 C -0.18 -1.87 10.18 30.59 0.31 -1.56 16 22 C -0.17 -1.77 10.25 30.59 0.31 -1.46 16 23 N -0.57 -33.79 7.92 -186.60 -1.48 -35.27 16 24 H 0.27 14.50 8.29 -92.71 -0.77 13.73 16 25 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 26 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 27 H 0.13 4.49 6.68 -2.91 -0.02 4.47 16 28 H 0.39 19.20 7.56 -92.71 -0.70 18.50 16 29 H 0.11 2.61 7.91 -2.39 -0.02 2.59 16 30 H 0.11 2.61 7.93 -2.39 -0.02 2.59 16 31 H 0.42 4.69 8.40 -92.71 -0.78 3.91 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.19 7.87 -2.39 -0.02 1.17 16 34 H 0.13 1.06 8.04 -2.39 -0.02 1.04 16 35 H 0.09 1.10 8.03 -2.39 -0.02 1.08 16 36 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.95 328.08 0.66 -75.29 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.39 Total: 38.50 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 4.86 Total: -5.12 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -5.78 Total: -128.32 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -75.95 0.66 -75.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324085928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.310 kcal (2) G-P(sol) polarization free energy of solvation -75.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds