Wall clock time and date at job start Mon Mar 30 2020 02:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86800 * 119.99706 * 2 1 4 4 H 1.48500 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 299.99661 * 3 2 1 6 6 H 1.48499 * 109.47597 * 59.99628 * 3 2 1 7 7 C 1.40029 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.41314 * 119.99541 * 0.02562 * 7 2 1 10 10 C 1.40593 * 119.78157 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14573 * 180.02562 * 10 9 7 12 12 C 1.38640 * 118.68148 * 359.74969 * 11 10 9 13 13 C 1.39757 * 119.49063 * 0.49568 * 12 11 10 14 14 N 1.38826 * 119.58461 * 179.77110 * 13 12 11 15 15 C 1.46496 * 119.99767 * 359.72289 * 14 13 12 16 16 C 1.53002 * 109.47030 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47035 * 180.02562 * 16 15 14 18 18 C 1.46758 * 124.34868 * 269.72411 * 17 16 15 19 19 C 1.54666 * 105.38094 * 162.85698 * 18 17 16 20 20 C 1.54633 * 101.68131 * 25.76532 * 19 18 17 21 21 C 1.34422 * 124.34544 * 90.02785 * 17 16 15 22 22 O 1.21281 * 124.94430 * 0.42636 * 21 17 16 23 23 N 1.31980 * 120.82838 * 359.49489 * 13 12 11 24 24 H 0.96998 * 120.00530 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.42711 * 359.97438 * 10 9 7 26 26 H 1.08005 * 120.65692 * 180.02562 * 11 10 9 27 27 H 1.07996 * 120.25087 * 180.26844 * 12 11 10 28 28 H 0.96999 * 120.00148 * 179.72788 * 14 13 12 29 29 H 1.09004 * 109.47074 * 60.00333 * 15 14 13 30 30 H 1.09004 * 109.47714 * 300.00242 * 15 14 13 31 31 H 1.09004 * 109.46930 * 60.00232 * 16 15 14 32 32 H 1.09000 * 109.47312 * 300.00176 * 16 15 14 33 33 H 1.08995 * 110.24981 * 281.98487 * 18 17 16 34 34 H 1.09003 * 110.24606 * 43.98802 * 18 17 16 35 35 H 1.09007 * 111.19017 * 267.59671 * 19 18 17 36 36 H 1.09000 * 110.82472 * 143.77586 * 19 18 17 37 37 H 1.08995 * 110.48646 * 216.30719 * 20 19 18 38 38 H 1.09006 * 110.59465 * 93.72538 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3966 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4364 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0820 -4.7945 0.0048 13 6 -0.7281 -3.5552 -0.0005 14 7 -2.1155 -3.5057 -0.0006 15 6 -2.8928 -4.7474 -0.0012 16 6 -4.3861 -4.4143 -0.0018 17 7 -5.1634 -5.6561 -0.0018 18 6 -5.6073 -6.3552 -1.2134 19 6 -5.9800 -7.7829 -0.7501 20 6 -6.3358 -7.5469 0.7361 21 6 -5.5666 -6.2985 1.1081 22 8 -5.3462 -5.9305 2.2425 23 7 -0.0359 -2.4315 0.0000 24 1 -0.4851 0.8400 -0.0004 25 1 3.0886 -3.6553 0.0001 26 1 1.8224 -5.7890 0.0004 27 1 -0.6575 -5.7083 0.0089 28 1 -2.5702 -2.6488 -0.0002 29 1 -2.6501 -5.3284 0.8886 30 1 -2.6500 -5.3277 -0.8914 31 1 -4.6284 -3.8335 -0.8918 32 1 -4.6292 -3.8339 0.8882 33 1 -6.4767 -5.8552 -1.6403 34 1 -4.7986 -6.3958 -1.9432 35 1 -5.1325 -8.4619 -0.8452 36 1 -6.8417 -8.1571 -1.3028 37 1 -6.0109 -8.3907 1.3448 38 1 -7.4073 -7.3838 0.8527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329646416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:01 Heat of formation + Delta-G solvation = 6.561883 kcal Electronic energy + Delta-G solvation = -20409.667392 eV Core-core repulsion = 17251.937824 eV Total energy + Delta-G solvation = -3157.729567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47261 -38.24425 -36.56984 -35.50116 -33.51230 -32.58392 -30.40184 -29.43811 -27.75814 -27.22082 -25.31810 -23.16695 -22.11477 -21.40719 -20.32537 -19.44850 -17.40644 -16.88524 -16.84814 -15.97612 -15.56090 -14.89499 -14.67135 -14.34463 -14.25238 -13.92605 -13.64376 -13.44114 -13.08274 -12.91789 -12.67729 -12.34656 -12.09671 -11.76469 -11.63177 -11.38676 -11.28381 -11.09051 -10.95219 -10.59966 -10.41803 -9.91873 -9.85790 -9.48102 -8.88476 -8.86861 -7.89123 -7.49426 -6.51394 -6.30820 -4.45170 2.47499 2.79814 2.88464 3.13207 3.17709 3.25642 3.31599 4.00377 4.13233 4.20880 4.32512 4.53991 4.78754 4.86177 5.03915 5.05990 5.24053 5.28925 5.41525 5.50287 5.52452 5.68754 5.95364 6.04794 6.13867 6.17777 6.39083 6.60362 6.87496 6.91204 6.95516 7.00425 7.26869 7.61242 7.82703 7.93320 8.06521 8.18748 8.37131 8.68632 8.82310 9.13605 10.26376 10.42397 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.003578 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.257452 B = 7823.373012 C = 8335.610822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.366 4.366 13 C 0.412 3.588 14 N -0.737 5.737 15 C 0.130 3.870 16 C 0.116 3.884 17 N -0.616 5.616 18 C 0.100 3.900 19 C -0.132 4.132 20 C -0.155 4.155 21 C 0.513 3.487 22 O -0.528 6.528 23 N -0.531 5.531 24 H 0.269 0.731 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.396 0.604 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.109 -10.482 -4.212 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.154 4.154 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.392 4.392 13 C 0.173 3.827 14 N -0.375 5.375 15 C 0.003 3.997 16 C -0.006 4.006 17 N -0.351 5.351 18 C -0.023 4.023 19 C -0.170 4.170 20 C -0.195 4.195 21 C 0.301 3.699 22 O -0.404 6.404 23 N -0.252 5.252 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.230 0.770 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.578 -9.485 -3.609 16.952 hybrid contribution 0.666 0.158 -0.103 0.692 sum -12.912 -9.327 -3.712 16.355 Atomic orbital electron populations 1.70156 1.07158 1.27211 1.29268 1.26052 0.94856 1.00926 0.93552 0.86320 0.80910 0.81416 0.78410 1.18454 1.19966 1.19953 1.19617 0.94181 0.89365 1.43481 0.89837 1.18207 0.86859 0.91876 0.86544 1.21541 0.98424 0.93461 1.20413 1.20593 0.93396 0.96391 0.95262 1.20597 0.94633 0.95443 1.28548 1.18462 0.84036 0.90315 0.89919 1.43914 1.02884 1.06420 1.84278 1.21306 0.89231 0.88231 1.00957 1.21512 0.90385 0.84791 1.03928 1.48177 1.53894 1.25653 1.07352 1.22166 1.00345 0.92184 0.87641 1.22636 1.02951 0.96340 0.95051 1.22328 1.01856 0.97519 0.97813 1.20967 0.79028 0.85492 0.84433 1.90760 1.57971 1.70533 1.21131 1.68196 1.07713 1.24269 1.25059 0.92013 0.88674 0.88947 0.89362 0.76966 0.92799 0.93023 0.89699 0.89380 0.90909 0.90005 0.89771 0.89181 0.88054 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.26 11.46 55.55 0.64 -18.63 16 2 C 0.07 1.85 5.50 -17.35 -0.10 1.75 16 3 Si 0.91 18.95 29.56 -169.99 -5.02 13.93 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.43 -11.96 9.14 -37.74 -0.34 -12.31 16 8 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 9 C 0.29 8.31 6.55 -85.00 -0.56 7.75 16 10 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 11 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.37 -8.78 9.34 -38.87 -0.36 -9.15 16 13 C 0.41 10.39 7.65 -155.31 -1.19 9.20 16 14 N -0.74 -15.14 5.72 -60.40 -0.35 -15.48 16 15 C 0.13 2.13 5.21 -4.04 -0.02 2.11 16 16 C 0.12 1.52 6.05 -4.04 -0.02 1.49 16 17 N -0.62 -7.03 2.93 -172.29 -0.51 -7.53 16 18 C 0.10 0.73 7.36 -3.03 -0.02 0.71 16 19 C -0.13 -0.74 7.19 -25.00 -0.18 -0.92 16 20 C -0.15 -1.21 6.86 -26.74 -0.18 -1.40 16 21 C 0.51 6.65 8.02 -10.86 -0.09 6.56 16 22 O -0.53 -9.42 17.59 5.56 0.10 -9.32 16 23 N -0.53 -14.99 7.89 -10.33 -0.08 -15.07 16 24 H 0.27 6.53 8.29 -40.82 -0.34 6.20 16 25 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 26 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 27 H 0.09 1.91 6.68 -52.49 -0.35 1.56 16 28 H 0.40 7.93 8.59 -40.82 -0.35 7.58 16 29 H 0.05 0.99 7.91 -51.93 -0.41 0.58 16 30 H 0.05 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.27 7.92 -51.93 -0.41 0.86 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -33.72 323.58 -9.48 -43.20 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.29 Total: 7.94 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -3.85 Total: -3.91 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.30 Total: -56.71 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.10 Total: -9.32 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.72 -9.48 -43.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329646416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.764 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds