Wall clock time and date at job start Mon Mar 30 2020 02:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86800 * 119.99706 * 2 1 4 4 H 1.48500 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 299.99661 * 3 2 1 6 6 H 1.48499 * 109.47597 * 59.99628 * 3 2 1 7 7 C 1.40029 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00110 * 180.02562 * 7 2 1 9 9 C 1.41314 * 119.99541 * 0.02562 * 7 2 1 10 10 C 1.40593 * 119.78157 * 179.97438 * 9 7 2 11 11 C 1.38353 * 119.14573 * 180.02562 * 10 9 7 12 12 C 1.38640 * 118.68148 * 359.74969 * 11 10 9 13 13 C 1.39757 * 119.49063 * 0.49568 * 12 11 10 14 14 N 1.38826 * 119.58461 * 179.77110 * 13 12 11 15 15 C 1.46496 * 119.99767 * 359.72289 * 14 13 12 16 16 C 1.53002 * 109.47030 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47035 * 180.02562 * 16 15 14 18 18 C 1.46758 * 124.34868 * 269.72411 * 17 16 15 19 19 C 1.54666 * 105.38094 * 162.85698 * 18 17 16 20 20 C 1.54633 * 101.68131 * 25.76532 * 19 18 17 21 21 C 1.34422 * 124.34544 * 90.02785 * 17 16 15 22 22 O 1.21281 * 124.94430 * 0.42636 * 21 17 16 23 23 N 1.31980 * 120.82838 * 359.49489 * 13 12 11 24 24 H 0.96998 * 120.00530 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.42711 * 359.97438 * 10 9 7 26 26 H 1.08005 * 120.65692 * 180.02562 * 11 10 9 27 27 H 1.07996 * 120.25087 * 180.26844 * 12 11 10 28 28 H 0.96999 * 120.00148 * 179.72788 * 14 13 12 29 29 H 1.09004 * 109.47074 * 60.00333 * 15 14 13 30 30 H 1.09004 * 109.47714 * 300.00242 * 15 14 13 31 31 H 1.09004 * 109.46930 * 60.00232 * 16 15 14 32 32 H 1.09000 * 109.47312 * 300.00176 * 16 15 14 33 33 H 1.08995 * 110.24981 * 281.98487 * 18 17 16 34 34 H 1.09003 * 110.24606 * 43.98802 * 18 17 16 35 35 H 1.09007 * 111.19017 * 267.59671 * 19 18 17 36 36 H 1.09000 * 110.82472 * 143.77586 * 19 18 17 37 37 H 1.08995 * 110.48646 * 216.30719 * 20 19 18 38 38 H 1.09006 * 110.59465 * 93.72538 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8825 2.3966 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3010 -2.4364 0.0005 10 6 2.0086 -3.6513 0.0005 11 6 1.3036 -4.8417 0.0000 12 6 -0.0820 -4.7945 0.0048 13 6 -0.7281 -3.5552 -0.0005 14 7 -2.1155 -3.5057 -0.0006 15 6 -2.8928 -4.7474 -0.0012 16 6 -4.3861 -4.4143 -0.0018 17 7 -5.1634 -5.6561 -0.0018 18 6 -5.6073 -6.3552 -1.2134 19 6 -5.9800 -7.7829 -0.7501 20 6 -6.3358 -7.5469 0.7361 21 6 -5.5666 -6.2985 1.1081 22 8 -5.3462 -5.9305 2.2425 23 7 -0.0359 -2.4315 0.0000 24 1 -0.4851 0.8400 -0.0004 25 1 3.0886 -3.6553 0.0001 26 1 1.8224 -5.7890 0.0004 27 1 -0.6575 -5.7083 0.0089 28 1 -2.5702 -2.6488 -0.0002 29 1 -2.6501 -5.3284 0.8886 30 1 -2.6500 -5.3277 -0.8914 31 1 -4.6284 -3.8335 -0.8918 32 1 -4.6292 -3.8339 0.8882 33 1 -6.4767 -5.8552 -1.6403 34 1 -4.7986 -6.3958 -1.9432 35 1 -5.1325 -8.4619 -0.8452 36 1 -6.8417 -8.1571 -1.3028 37 1 -6.0109 -8.3907 1.3448 38 1 -7.4073 -7.3838 0.8527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329646416.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:00 Heat of formation + Delta-G solvation = -15.520164 kcal Electronic energy + Delta-G solvation = -20410.624941 eV Core-core repulsion = 17251.937824 eV Total energy + Delta-G solvation = -3158.687117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38111 -40.14112 -37.68764 -36.95972 -35.29730 -33.80879 -32.30579 -31.09281 -28.65214 -28.45092 -27.26455 -24.50207 -23.32060 -22.71649 -22.17768 -20.42728 -19.30531 -18.28127 -17.74593 -17.25150 -16.77725 -16.46816 -16.40095 -15.96760 -15.62468 -15.15113 -14.78265 -14.69733 -14.43731 -14.16232 -14.09319 -13.74425 -13.31636 -13.02488 -12.96132 -12.73497 -12.59063 -12.57598 -12.24075 -12.22967 -11.82641 -11.73156 -11.32174 -10.90109 -10.71316 -9.87319 -9.82197 -9.48309 -8.37270 -8.24762 -6.49991 1.02786 1.30692 1.41751 1.49092 1.56615 1.57171 1.85001 2.24905 2.78284 2.90739 3.42100 3.64596 3.85349 3.92566 4.05274 4.09517 4.24157 4.28828 4.37407 4.64324 4.66798 4.70879 4.76606 4.82059 4.90432 4.96138 4.97712 5.07004 5.11658 5.24985 5.33665 5.49679 5.68201 5.92781 6.02101 6.11843 6.20807 6.49527 6.80116 6.89739 7.09704 7.17530 8.30611 8.49641 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029213 B = 0.003578 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.257452 B = 7823.373012 C = 8335.610822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.025 3.975 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.088 0.912 9 C 0.258 3.742 10 C -0.341 4.341 11 C -0.029 4.029 12 C -0.370 4.370 13 C 0.394 3.606 14 N -0.732 5.732 15 C 0.137 3.863 16 C 0.125 3.875 17 N -0.616 5.616 18 C 0.091 3.909 19 C -0.119 4.119 20 C -0.146 4.146 21 C 0.496 3.504 22 O -0.591 6.591 23 N -0.563 5.563 24 H 0.277 0.723 25 H 0.105 0.895 26 H 0.130 0.870 27 H 0.111 0.889 28 H 0.396 0.604 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -11.418 -5.664 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.501 4.501 8 H 0.106 0.894 9 C 0.131 3.869 10 C -0.364 4.364 11 C -0.054 4.054 12 C -0.396 4.396 13 C 0.154 3.846 14 N -0.368 5.368 15 C 0.011 3.989 16 C 0.001 3.999 17 N -0.349 5.349 18 C -0.030 4.030 19 C -0.156 4.156 20 C -0.186 4.186 21 C 0.286 3.714 22 O -0.472 6.472 23 N -0.286 5.286 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.147 0.853 27 H 0.129 0.871 28 H 0.230 0.770 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.618 -10.477 -5.108 18.696 hybrid contribution 0.900 0.338 0.333 1.017 sum -13.718 -10.139 -4.775 17.714 Atomic orbital electron populations 1.70245 1.08829 1.28715 1.29569 1.26986 0.95764 1.04442 0.92495 0.85079 0.79390 0.75988 0.78706 1.17841 1.18968 1.19312 1.19982 0.94668 0.90420 1.45022 0.89410 1.18709 0.87594 0.93293 0.87333 1.21714 0.99097 0.93674 1.21875 1.21002 0.93541 0.97311 0.93501 1.20913 0.95127 0.95893 1.27671 1.18915 0.85722 0.90372 0.89620 1.44047 1.01634 1.07942 1.83172 1.21389 0.90847 0.86419 1.00245 1.21299 0.88413 0.85987 1.04169 1.48373 1.52745 1.24981 1.08801 1.22531 1.01417 0.93063 0.85998 1.22692 1.04435 0.95202 0.93320 1.22376 1.02129 0.94668 0.99448 1.22001 0.78786 0.86833 0.83755 1.90718 1.60498 1.72351 1.23627 1.68180 1.08078 1.25864 1.26493 0.91277 0.87699 0.85250 0.87069 0.76959 0.95077 0.91749 0.87200 0.91407 0.88672 0.89321 0.89511 0.85777 0.87554 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.32 11.46 21.84 0.25 -41.07 16 2 C 0.02 1.31 5.50 85.29 0.47 1.78 16 3 Si 0.99 39.17 29.56 68.60 2.03 41.20 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.47 -26.53 9.14 23.46 0.21 -26.31 16 8 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 9 C 0.26 15.09 6.55 40.19 0.26 15.36 16 10 C -0.34 -17.91 9.83 22.87 0.22 -17.68 16 11 C -0.03 -1.39 10.15 22.39 0.23 -1.16 16 12 C -0.37 -17.60 9.34 22.73 0.21 -17.38 16 13 C 0.39 20.17 7.65 133.40 1.02 21.19 16 14 N -0.73 -30.45 5.72 -344.99 -1.97 -32.42 16 15 C 0.14 4.47 5.21 86.38 0.45 4.91 16 16 C 0.12 3.20 6.05 86.38 0.52 3.72 16 17 N -0.62 -13.21 2.93 -817.61 -2.40 -15.61 16 18 C 0.09 1.04 7.36 86.90 0.64 1.68 16 19 C -0.12 -0.88 7.19 31.72 0.23 -0.65 16 20 C -0.15 -1.93 6.86 30.59 0.21 -1.72 16 21 C 0.50 12.62 8.02 87.90 0.70 13.32 16 22 O -0.59 -21.88 17.59 -3.03 -0.05 -21.93 16 23 N -0.56 -32.75 7.89 -186.59 -1.47 -34.22 16 24 H 0.28 13.67 8.29 -92.71 -0.77 12.90 16 25 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 26 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 27 H 0.11 4.67 6.68 -2.91 -0.02 4.65 16 28 H 0.40 16.27 8.59 -92.71 -0.80 15.48 16 29 H 0.03 1.16 7.91 -2.38 -0.02 1.14 16 30 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 31 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 32 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -77.08 323.58 2.04 -75.04 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.27 Total: 31.97 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.39 Total: -2.95 kcal Atomic # 7 Polarization: -117.73 SS G_CDS: -5.59 Total: -123.32 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -77.08 2.04 -75.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329646416.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.516 kcal (2) G-P(sol) polarization free energy of solvation -77.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds