Wall clock time and date at job start Mon Mar 30 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47394 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46926 * 299.99778 * 3 2 1 6 6 H 1.48503 * 109.47035 * 59.99816 * 3 2 1 7 7 C 1.40033 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99519 * 180.02562 * 7 2 1 9 9 C 1.41331 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.40623 * 119.78371 * 180.02562 * 9 7 2 11 11 C 1.38311 * 119.12447 * 180.02562 * 10 9 7 12 12 C 1.38693 * 118.67001 * 359.97438 * 11 10 9 13 13 C 1.39635 * 119.49767 * 0.02562 * 12 11 10 14 14 N 1.39265 * 119.57426 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00294 * 174.46717 * 14 13 12 16 16 O 1.21276 * 119.99678 * 5.20647 * 15 14 13 17 17 C 1.50704 * 120.00248 * 185.21269 * 15 14 13 18 18 H 1.08997 * 110.01566 * 36.04961 * 17 15 14 19 19 C 1.54270 * 110.07253 * 157.46241 * 17 15 14 20 20 C 1.54892 * 104.19460 * 142.91748 * 19 17 15 21 21 C 1.54890 * 102.74550 * 322.05860 * 20 19 17 22 22 C 1.53874 * 110.03292 * 274.65212 * 17 15 14 23 23 H 1.08997 * 110.02918 * 121.32859 * 22 17 15 24 24 N 1.46908 * 110.02759 * 359.95434 * 22 17 15 25 25 N 1.31933 * 120.85044 * 0.24919 * 13 12 11 26 26 H 0.96998 * 120.00216 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.43524 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.66084 * 179.97438 * 11 10 9 29 29 H 1.08004 * 120.24990 * 179.97438 * 12 11 10 30 30 H 0.97008 * 120.00011 * 354.46380 * 14 13 12 31 31 H 1.09001 * 110.48665 * 261.59282 * 19 17 15 32 32 H 1.09000 * 110.48713 * 24.24189 * 19 17 15 33 33 H 1.08993 * 110.75526 * 80.37131 * 20 19 17 34 34 H 1.08994 * 110.75499 * 203.74320 * 20 19 17 35 35 H 1.09004 * 110.48473 * 279.26213 * 21 20 19 36 36 H 1.09005 * 110.48566 * 156.62338 * 21 20 19 37 37 H 1.00900 * 110.99114 * 174.54021 * 24 22 17 38 38 H 1.00901 * 110.99756 * 298.48456 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0001 9 6 1.3008 -2.4367 -0.0005 10 6 2.0084 -3.6519 -0.0005 11 6 1.3031 -4.8416 -0.0011 12 6 -0.0830 -4.7934 -0.0011 13 6 -0.7279 -3.5549 -0.0010 14 7 -2.1196 -3.5046 -0.0016 15 6 -2.7512 -2.3194 0.1110 16 8 -2.1110 -1.2894 0.1176 17 6 -4.2530 -2.2739 0.2287 18 1 -4.6070 -3.1216 0.8154 19 6 -4.6923 -0.9521 0.8917 20 6 -5.9988 -0.5718 0.1516 21 6 -5.6979 -0.9893 -1.3093 22 6 -4.8923 -2.2975 -1.1707 23 1 -5.5560 -3.1572 -1.2635 24 7 -3.8465 -2.3562 -2.2008 25 7 -0.0357 -2.4317 -0.0060 26 1 -0.4850 0.8400 -0.0004 27 1 3.0884 -3.6560 -0.0001 28 1 1.8214 -5.7891 -0.0015 29 1 -0.6592 -5.7069 -0.0019 30 1 -2.6345 -4.3227 -0.0830 31 1 -4.8858 -1.1038 1.9536 32 1 -3.9342 -0.1824 0.7471 33 1 -6.8446 -1.1339 0.5475 34 1 -6.1817 0.5007 0.2170 35 1 -5.1021 -0.2256 -1.8093 36 1 -6.6252 -1.1681 -1.8537 37 1 -4.2497 -2.4618 -3.1197 38 1 -3.2513 -1.5425 -2.1585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330968642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:19 Heat of formation + Delta-G solvation = 14.104708 kcal Electronic energy + Delta-G solvation = -21829.652425 eV Core-core repulsion = 18672.249939 eV Total energy + Delta-G solvation = -3157.402486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75393 -38.11361 -36.50989 -33.93884 -32.89349 -32.35454 -30.23406 -29.59646 -28.30484 -26.26401 -25.39444 -22.50469 -21.25273 -20.67237 -20.24375 -18.55233 -17.51739 -16.87461 -16.08508 -15.83028 -14.70268 -14.56066 -14.40838 -14.32118 -13.68574 -13.51446 -13.14716 -12.90270 -12.82840 -12.36906 -11.97076 -11.86267 -11.28603 -11.17385 -10.99591 -10.94471 -10.87176 -10.69189 -10.55014 -10.47822 -10.39392 -9.83876 -9.52525 -8.90047 -8.73177 -8.45873 -7.85593 -7.07826 -6.79878 -6.05442 -4.31389 2.87815 3.15625 3.20676 3.24256 3.33655 3.90844 4.06043 4.11454 4.54303 4.74599 4.80394 5.02469 5.10698 5.42729 5.48946 5.58843 5.60949 5.71949 5.76528 5.89271 6.05889 6.15618 6.17672 6.23276 6.27800 6.58965 6.60700 6.84595 6.93634 6.98249 7.32426 7.33648 7.64789 7.67433 7.76994 7.91467 8.21099 8.32739 8.63797 8.84740 9.15353 9.49800 10.36505 10.56155 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.007127 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.864642 B = 3927.925631 C = 5230.364554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.653 5.653 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.428 4.428 8 H 0.081 0.919 9 C 0.272 3.728 10 C -0.309 4.309 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.378 3.622 14 N -0.654 5.654 15 C 0.499 3.501 16 O -0.420 6.420 17 C -0.112 4.112 18 H 0.083 0.917 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.158 4.158 22 C 0.103 3.897 23 H 0.082 0.918 24 N -0.841 5.841 25 N -0.471 5.471 26 H 0.269 0.731 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.335 0.665 38 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.193 -1.730 -1.204 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.170 4.170 3 Si 0.717 3.283 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.459 4.459 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.332 4.332 11 C -0.062 4.062 12 C -0.384 4.384 13 C 0.139 3.861 14 N -0.299 5.299 15 C 0.281 3.719 16 O -0.285 6.285 17 C -0.135 4.135 18 H 0.101 0.899 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.198 4.198 22 C -0.010 4.010 23 H 0.100 0.900 24 N -0.371 5.371 25 N -0.190 5.190 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.148 0.852 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.119 -0.603 -0.814 12.161 hybrid contribution 0.021 0.110 -0.441 0.455 sum -12.097 -0.493 -1.255 12.172 Atomic orbital electron populations 1.70358 1.05581 1.26913 1.24357 1.26158 0.95113 1.00382 0.95312 0.86519 0.81005 0.82528 0.78239 1.18672 1.20191 1.20181 1.19573 0.93977 0.89395 1.42980 0.90131 1.18410 0.87385 0.91860 0.87714 1.21609 0.98426 0.93621 1.19515 1.20547 0.93253 0.96422 0.95943 1.20524 0.94743 0.95150 1.27936 1.18654 0.83689 0.90693 0.93089 1.43278 1.04560 1.09335 1.72728 1.20154 0.88364 0.84805 0.78589 1.91104 1.65056 1.30898 1.41419 1.22092 0.94847 0.99831 0.96715 0.89879 1.22374 0.97429 0.96905 0.98546 1.22404 0.97624 1.00755 0.94997 1.23246 1.00265 0.98646 0.97594 1.21950 0.91531 0.96471 0.91051 0.89961 1.58887 1.21814 1.49461 1.06956 1.68732 1.06746 1.23238 1.20332 0.91921 0.88786 0.88855 0.89279 0.77009 0.91760 0.89023 0.91776 0.91687 0.91423 0.91949 0.85216 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.02 9.00 55.55 0.50 -17.52 16 2 C 0.06 1.57 5.50 -17.34 -0.10 1.48 16 3 Si 0.89 19.47 29.56 -169.99 -5.02 14.44 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.43 -11.98 9.14 -37.73 -0.34 -12.33 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.79 6.55 -85.00 -0.56 7.23 16 10 C -0.31 -8.00 9.83 -38.66 -0.38 -8.38 16 11 C -0.04 -0.88 10.15 -39.39 -0.40 -1.28 16 12 C -0.36 -8.35 9.95 -38.89 -0.39 -8.73 16 13 C 0.38 9.43 7.43 -154.97 -1.15 8.27 16 14 N -0.65 -13.27 5.38 -11.40 -0.06 -13.33 16 15 C 0.50 9.94 5.09 -10.99 -0.06 9.88 16 16 O -0.42 -10.21 11.10 5.56 0.06 -10.15 16 17 C -0.11 -1.63 3.30 -90.65 -0.30 -1.93 16 18 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 19 C -0.11 -1.60 6.29 -25.07 -0.16 -1.76 16 20 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 21 C -0.16 -1.76 6.51 -25.08 -0.16 -1.92 16 22 C 0.10 1.27 4.02 -66.60 -0.27 1.00 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 24 N -0.84 -11.98 8.13 -3.72 -0.03 -12.01 16 25 N -0.47 -13.35 5.74 -10.26 -0.06 -13.41 16 26 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 27 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 28 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.40 6.64 8.70 -40.82 -0.36 6.29 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.57 6.79 -51.93 -0.35 1.21 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.34 3.96 9.08 -39.29 -0.36 3.60 16 38 H 0.35 6.09 7.84 -39.29 -0.31 5.78 16 LS Contribution 310.39 15.07 4.68 4.68 Total: -1.00 -31.69 310.39 -9.50 -41.19 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -5.13 Total: 16.06 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.43 Total: -9.95 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.35 Total: -56.28 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.06 Total: -10.15 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.69 -9.50 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330968642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.296 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds