Wall clock time and date at job start Mon Mar 30 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48501 * 109.47394 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46926 * 299.99778 * 3 2 1 6 6 H 1.48503 * 109.47035 * 59.99816 * 3 2 1 7 7 C 1.40033 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99519 * 180.02562 * 7 2 1 9 9 C 1.41331 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.40623 * 119.78371 * 180.02562 * 9 7 2 11 11 C 1.38311 * 119.12447 * 180.02562 * 10 9 7 12 12 C 1.38693 * 118.67001 * 359.97438 * 11 10 9 13 13 C 1.39635 * 119.49767 * 0.02562 * 12 11 10 14 14 N 1.39265 * 119.57426 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00294 * 174.46717 * 14 13 12 16 16 O 1.21276 * 119.99678 * 5.20647 * 15 14 13 17 17 C 1.50704 * 120.00248 * 185.21269 * 15 14 13 18 18 H 1.08997 * 110.01566 * 36.04961 * 17 15 14 19 19 C 1.54270 * 110.07253 * 157.46241 * 17 15 14 20 20 C 1.54892 * 104.19460 * 142.91748 * 19 17 15 21 21 C 1.54890 * 102.74550 * 322.05860 * 20 19 17 22 22 C 1.53874 * 110.03292 * 274.65212 * 17 15 14 23 23 H 1.08997 * 110.02918 * 121.32859 * 22 17 15 24 24 N 1.46908 * 110.02759 * 359.95434 * 22 17 15 25 25 N 1.31933 * 120.85044 * 0.24919 * 13 12 11 26 26 H 0.96998 * 120.00216 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.43524 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.66084 * 179.97438 * 11 10 9 29 29 H 1.08004 * 120.24990 * 179.97438 * 12 11 10 30 30 H 0.97008 * 120.00011 * 354.46380 * 14 13 12 31 31 H 1.09001 * 110.48665 * 261.59282 * 19 17 15 32 32 H 1.09000 * 110.48713 * 24.24189 * 19 17 15 33 33 H 1.08993 * 110.75526 * 80.37131 * 20 19 17 34 34 H 1.08994 * 110.75499 * 203.74320 * 20 19 17 35 35 H 1.09004 * 110.48473 * 279.26213 * 21 20 19 36 36 H 1.09005 * 110.48566 * 156.62338 * 21 20 19 37 37 H 1.00900 * 110.99114 * 174.54021 * 24 22 17 38 38 H 1.00901 * 110.99756 * 298.48456 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2127 -0.0001 9 6 1.3008 -2.4367 -0.0005 10 6 2.0084 -3.6519 -0.0005 11 6 1.3031 -4.8416 -0.0011 12 6 -0.0830 -4.7934 -0.0011 13 6 -0.7279 -3.5549 -0.0010 14 7 -2.1196 -3.5046 -0.0016 15 6 -2.7512 -2.3194 0.1110 16 8 -2.1110 -1.2894 0.1176 17 6 -4.2530 -2.2739 0.2287 18 1 -4.6070 -3.1216 0.8154 19 6 -4.6923 -0.9521 0.8917 20 6 -5.9988 -0.5718 0.1516 21 6 -5.6979 -0.9893 -1.3093 22 6 -4.8923 -2.2975 -1.1707 23 1 -5.5560 -3.1572 -1.2635 24 7 -3.8465 -2.3562 -2.2008 25 7 -0.0357 -2.4317 -0.0060 26 1 -0.4850 0.8400 -0.0004 27 1 3.0884 -3.6560 -0.0001 28 1 1.8214 -5.7891 -0.0015 29 1 -0.6592 -5.7069 -0.0019 30 1 -2.6345 -4.3227 -0.0830 31 1 -4.8858 -1.1038 1.9536 32 1 -3.9342 -0.1824 0.7471 33 1 -6.8446 -1.1339 0.5475 34 1 -6.1817 0.5007 0.2170 35 1 -5.1021 -0.2256 -1.8093 36 1 -6.6252 -1.1681 -1.8537 37 1 -4.2497 -2.4618 -3.1197 38 1 -3.2513 -1.5425 -2.1585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330968642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:18 Heat of formation + Delta-G solvation = -7.303227 kcal Electronic energy + Delta-G solvation = -21830.580743 eV Core-core repulsion = 18672.249939 eV Total energy + Delta-G solvation = -3158.330804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20830 -39.78657 -37.98105 -35.78620 -34.73032 -33.43849 -32.17380 -31.22512 -29.74041 -27.50376 -27.16497 -24.16541 -23.14028 -21.83525 -21.60598 -20.09227 -19.30246 -18.04616 -17.85718 -17.25861 -16.42438 -16.22890 -15.86108 -15.49825 -15.42842 -15.11840 -14.67934 -14.33604 -14.19994 -13.77782 -13.74604 -13.35770 -12.89601 -12.71447 -12.51584 -12.41029 -12.28028 -12.08825 -11.92240 -11.75473 -11.68484 -11.53329 -11.38347 -10.77127 -10.39362 -9.83057 -9.53653 -8.97788 -8.68363 -8.00113 -6.37544 0.98819 1.30714 1.39712 1.52353 1.53847 2.27730 2.34390 2.53222 3.04591 3.47712 3.71952 3.79479 4.03509 4.12957 4.28942 4.45067 4.49514 4.51664 4.55786 4.68167 4.77392 4.81555 4.96075 4.99619 5.00873 5.14882 5.17732 5.17794 5.31581 5.35956 5.50324 5.74063 5.96353 5.98168 6.18816 6.21857 6.45677 6.58303 6.83473 6.97666 7.16511 7.91747 8.43179 8.61315 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.007127 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.864642 B = 3927.925631 C = 5230.364554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.683 5.683 2 C 0.012 3.988 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.468 4.468 8 H 0.082 0.918 9 C 0.237 3.763 10 C -0.335 4.335 11 C -0.036 4.036 12 C -0.352 4.352 13 C 0.356 3.644 14 N -0.645 5.645 15 C 0.492 3.508 16 O -0.468 6.468 17 C -0.104 4.104 18 H 0.111 0.889 19 C -0.117 4.117 20 C -0.110 4.110 21 C -0.152 4.152 22 C 0.106 3.894 23 H 0.113 0.887 24 N -0.852 5.852 25 N -0.502 5.502 26 H 0.268 0.732 27 H 0.101 0.899 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.414 0.586 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.348 0.652 38 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -2.925 -1.287 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.213 4.213 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.499 4.499 8 H 0.100 0.900 9 C 0.111 3.889 10 C -0.358 4.358 11 C -0.060 4.060 12 C -0.377 4.377 13 C 0.117 3.883 14 N -0.292 5.292 15 C 0.276 3.724 16 O -0.335 6.335 17 C -0.127 4.127 18 H 0.129 0.871 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.192 4.192 22 C -0.006 4.006 23 H 0.131 0.869 24 N -0.382 5.382 25 N -0.222 5.222 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.251 0.749 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.162 0.838 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.148 -1.858 -0.905 14.298 hybrid contribution 0.576 0.315 -0.408 0.773 sum -13.572 -1.543 -1.313 13.723 Atomic orbital electron populations 1.70546 1.07000 1.27613 1.25090 1.26979 0.96060 1.03701 0.94583 0.85325 0.79612 0.77451 0.78322 1.17968 1.19559 1.19684 1.19871 0.94259 0.90534 1.45215 0.90018 1.18902 0.88265 0.93224 0.88495 1.21779 0.99007 0.93991 1.21023 1.20998 0.93632 0.97199 0.94144 1.20986 0.95146 0.95967 1.25602 1.19191 0.85652 0.90783 0.92669 1.43328 1.02967 1.10629 1.72232 1.21118 0.90550 0.83826 0.76902 1.91102 1.66760 1.32461 1.43166 1.22153 0.90465 1.01127 0.98906 0.87056 1.22347 0.98009 0.95558 0.99601 1.22386 0.96608 1.01447 0.94303 1.23190 1.00830 0.97297 0.97874 1.22085 0.91202 0.98356 0.88992 0.86903 1.58892 1.22530 1.48327 1.08406 1.68713 1.06912 1.25216 1.21345 0.92091 0.88123 0.84914 0.85561 0.74930 0.90917 0.93125 0.88983 0.91417 0.93490 0.89204 0.83780 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.60 9.00 21.84 0.20 -39.41 16 2 C 0.01 0.69 5.50 85.29 0.47 1.15 16 3 Si 0.97 41.54 29.56 68.60 2.03 43.57 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.47 -27.36 9.14 23.47 0.21 -27.14 16 8 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.24 14.10 6.55 40.21 0.26 14.37 16 10 C -0.34 -17.65 9.83 22.87 0.22 -17.42 16 11 C -0.04 -1.62 10.15 22.40 0.23 -1.40 16 12 C -0.35 -15.82 9.95 22.72 0.23 -15.60 16 13 C 0.36 17.84 7.43 133.23 0.99 18.83 16 14 N -0.64 -25.77 5.38 -308.38 -1.66 -27.43 16 15 C 0.49 19.70 5.09 87.66 0.45 20.15 16 16 O -0.47 -23.76 11.10 -3.02 -0.03 -23.79 16 17 C -0.10 -2.85 3.30 -10.81 -0.04 -2.89 16 18 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 19 C -0.12 -3.17 6.29 31.67 0.20 -2.98 16 20 C -0.11 -2.14 6.91 31.89 0.22 -1.92 16 21 C -0.15 -3.03 6.51 31.67 0.21 -2.83 16 22 C 0.11 2.35 4.02 45.63 0.18 2.54 16 23 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 24 N -0.85 -23.55 8.13 -165.68 -1.35 -24.90 16 25 N -0.50 -29.42 5.74 -186.36 -1.07 -30.49 16 26 H 0.27 14.61 8.29 -92.71 -0.77 13.84 16 27 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 28 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 29 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 30 H 0.41 13.00 8.70 -92.70 -0.81 12.19 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.81 6.79 -2.39 -0.02 1.80 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.14 7.92 -2.38 -0.02 1.12 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.35 7.78 9.08 -89.69 -0.81 6.96 16 38 H 0.33 11.82 7.84 -89.69 -0.70 11.11 16 Total: -1.00 -73.19 310.39 0.73 -72.46 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -1.22 Total: 45.11 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 3.83 Total: -15.12 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -3.88 Total: -122.23 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.03 Total: -23.79 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -73.19 0.73 -72.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330968642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.156 kcal (2) G-P(sol) polarization free energy of solvation -73.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds