Wall clock time and date at job start Mon Mar 30 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86795 * 120.00473 * 2 1 4 4 H 1.48500 * 109.46894 * 89.99891 * 3 2 1 5 5 H 1.48497 * 109.47401 * 210.00193 * 3 2 1 6 6 H 1.48511 * 109.46935 * 330.00303 * 3 2 1 7 7 C 1.40035 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 15.97005 * 7 2 1 9 9 C 1.41329 * 119.99939 * 195.96849 * 7 2 1 10 10 C 1.40610 * 119.79123 * 188.65711 * 9 7 2 11 11 C 1.38304 * 119.13150 * 179.77008 * 10 9 7 12 12 C 1.38697 * 118.66593 * 0.50001 * 11 10 9 13 13 C 1.39622 * 119.49760 * 359.74930 * 12 11 10 14 14 N 1.39277 * 119.57489 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99775 * 18.83855 * 14 13 12 16 16 O 1.21277 * 120.00259 * 5.59383 * 15 14 13 17 17 C 1.50699 * 120.00071 * 185.58130 * 15 14 13 18 18 C 1.53122 * 109.52506 * 299.69055 * 17 15 14 19 19 C 1.53038 * 109.27758 * 182.43625 * 18 17 15 20 20 N 1.46848 * 109.52344 * 59.18058 * 19 18 17 21 21 C 1.46850 * 111.19765 * 298.25531 * 20 19 18 22 22 C 1.53044 * 109.52288 * 61.74339 * 21 20 19 23 23 N 1.31924 * 120.85444 * 359.97438 * 13 12 11 24 24 H 0.96991 * 120.00068 * 174.93117 * 1 2 3 25 25 H 1.08000 * 120.43088 * 0.02929 * 10 9 7 26 26 H 1.08003 * 120.66432 * 180.22544 * 11 10 9 27 27 H 1.08005 * 120.24633 * 179.76650 * 12 11 10 28 28 H 0.96998 * 120.00019 * 198.84993 * 14 13 12 29 29 H 1.09004 * 109.52243 * 59.87829 * 17 15 14 30 30 H 1.08993 * 109.50193 * 302.37913 * 18 17 15 31 31 H 1.09003 * 109.50067 * 62.49586 * 18 17 15 32 32 H 1.08999 * 109.46096 * 299.16211 * 19 18 17 33 33 H 1.08998 * 109.46216 * 179.19291 * 19 18 17 34 34 H 1.00905 * 110.99960 * 62.35343 * 20 19 18 35 35 H 1.08997 * 109.46001 * 301.72966 * 21 20 19 36 36 H 1.08999 * 109.45169 * 181.75085 * 21 20 19 37 37 H 1.09001 * 109.50243 * 180.88215 * 22 21 20 38 38 H 1.08998 * 109.50437 * 60.76194 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4400 -0.7001 6 1 1.4390 2.6527 -0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 1.4987 -2.1298 -0.2583 9 6 3.3800 -1.2366 0.3362 10 6 4.1222 -2.4177 0.1596 11 6 5.4654 -2.4244 0.4890 12 6 6.0324 -1.2637 0.9939 13 6 5.2412 -0.1241 1.1512 14 7 5.8090 1.0425 1.6576 15 6 7.1469 1.2045 1.6375 16 8 7.8491 0.3823 1.0882 17 6 7.7702 2.4074 2.2974 18 6 7.2399 3.6843 1.6395 19 6 7.9217 4.8994 2.2724 20 7 9.3749 4.7989 2.0865 21 6 9.9138 3.6050 2.7503 22 6 9.2914 2.3511 2.1317 23 7 3.9629 -0.1378 0.8254 24 1 -0.4850 -0.8367 -0.0742 25 1 3.6505 -3.3068 -0.2322 26 1 6.0598 -3.3169 0.3599 27 1 7.0782 -1.2416 1.2631 28 1 5.2417 1.7382 2.0248 29 1 7.5193 2.4118 3.3581 30 1 7.4568 3.6604 0.5716 31 1 6.1626 3.7514 1.7912 32 1 7.6930 4.9303 3.3376 33 1 7.5569 5.8095 1.7962 34 1 9.6156 4.8075 1.1067 35 1 9.6757 3.6419 3.8133 36 1 10.9957 3.5750 2.6211 37 1 9.6798 1.4657 2.6352 38 1 9.5406 2.3063 1.0715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330990727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:39 Heat of formation + Delta-G solvation = -19.537794 kcal Electronic energy + Delta-G solvation = -21191.454703 eV Core-core repulsion = 18032.593368 eV Total energy + Delta-G solvation = -3158.861334 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56186 -38.82220 -37.69460 -34.63507 -33.58029 -32.27641 -31.15349 -31.01280 -29.39821 -25.56502 -24.82969 -23.15903 -22.23489 -21.77326 -20.69025 -19.71900 -18.40104 -17.55977 -16.49244 -16.28624 -15.10371 -14.95699 -14.89980 -14.82739 -14.41154 -14.14071 -13.71736 -13.40649 -13.04849 -12.87325 -12.51237 -12.41589 -12.22542 -12.08307 -11.88967 -11.47599 -11.17409 -10.92942 -10.87474 -10.69842 -10.35874 -10.01983 -9.77070 -9.26121 -9.12012 -8.63750 -8.54698 -7.94909 -7.44464 -7.30821 -4.79142 2.17524 2.63963 2.99950 3.24338 3.43201 3.56913 3.86100 4.06566 4.29420 4.45983 4.49849 4.57783 4.60822 4.86227 5.08353 5.15506 5.19046 5.40326 5.48396 5.51742 5.59887 5.69557 5.76419 5.84695 5.91852 6.04817 6.08934 6.44629 6.50286 6.53662 6.73596 7.09436 7.11598 7.17526 7.40887 7.54932 7.58735 7.75287 8.08838 8.26348 8.42241 8.62830 9.41000 9.94333 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.005370 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.484660 B = 5213.319254 C = 6297.403448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.050 3.950 3 Si 1.143 2.857 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.326 1.326 7 C -0.482 4.482 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.277 4.277 11 C -0.037 4.037 12 C -0.312 4.312 13 C 0.382 3.618 14 N -0.654 5.654 15 C 0.518 3.482 16 O -0.513 6.513 17 C -0.103 4.103 18 C -0.155 4.155 19 C 0.059 3.941 20 N -0.688 5.688 21 C 0.057 3.943 22 C -0.137 4.137 23 N -0.595 5.595 24 H 0.285 0.715 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.406 0.594 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.342 0.658 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.755 8.447 5.138 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.173 4.173 3 Si 0.976 3.024 4 H -0.215 1.215 5 H -0.208 1.208 6 H -0.258 1.258 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.150 3.850 10 C -0.300 4.300 11 C -0.061 4.061 12 C -0.336 4.336 13 C 0.151 3.849 14 N -0.299 5.299 15 C 0.304 3.696 16 O -0.388 6.388 17 C -0.125 4.125 18 C -0.194 4.194 19 C -0.071 4.071 20 N -0.316 5.316 21 C -0.073 4.073 22 C -0.176 4.176 23 N -0.320 5.320 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.241 0.759 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.160 0.840 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.636 10.554 5.472 18.091 hybrid contribution -0.311 -3.187 -0.609 3.259 sum 13.325 7.367 4.864 15.984 Atomic orbital electron populations 1.70611 1.08252 1.33067 1.30564 1.27646 0.95221 1.05919 0.88469 0.82144 0.72763 0.70139 0.77366 1.21504 1.20816 1.25826 1.20669 0.93157 0.97039 1.40489 0.89793 1.18186 0.92946 0.86057 0.87795 1.21618 0.94642 0.99845 1.13852 1.20918 0.94359 0.96308 0.94523 1.21508 1.01798 0.92959 1.17385 1.18115 0.89716 0.84610 0.92504 1.43341 1.07333 1.19382 1.59807 1.20619 0.81516 0.87540 0.79924 1.90620 1.61568 1.43817 1.42808 1.21372 0.97021 0.92914 1.01192 1.22337 1.01611 0.94522 1.00969 1.22032 0.87011 0.96616 1.01398 1.60676 1.11979 1.39845 1.19097 1.22069 0.99291 0.87025 0.98924 1.22094 0.92751 0.99967 1.02830 1.66187 1.10212 1.30286 1.25333 0.90406 0.87694 0.87665 0.84526 0.75854 0.88162 0.91024 0.90466 0.90534 0.90144 0.84044 0.90773 0.90320 0.90506 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.69 13.65 55.55 0.76 -20.93 16 2 C 0.05 1.34 5.51 -17.34 -0.10 1.24 16 3 Si 1.14 27.45 25.93 -169.99 -4.41 23.04 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.94 6.55 56.52 0.37 -6.57 16 6 H -0.33 -7.67 7.11 56.52 0.40 -7.27 16 7 C -0.48 -13.14 9.51 -37.73 -0.36 -13.49 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.27 7.26 6.27 -85.00 -0.53 6.73 16 10 C -0.28 -6.70 9.83 -38.66 -0.38 -7.08 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.31 -7.13 8.83 -38.90 -0.34 -7.47 16 13 C 0.38 8.82 7.51 -154.97 -1.16 7.66 16 14 N -0.65 -12.06 5.34 -11.40 -0.06 -12.12 16 15 C 0.52 8.49 7.00 -10.99 -0.08 8.41 16 16 O -0.51 -10.04 12.78 5.56 0.07 -9.97 16 17 C -0.10 -1.16 2.60 -91.65 -0.24 -1.40 16 18 C -0.15 -1.53 5.24 -26.65 -0.14 -1.66 16 19 C 0.06 0.48 6.55 -3.83 -0.03 0.46 16 20 N -0.69 -5.78 6.87 -113.81 -0.78 -6.57 16 21 C 0.06 0.46 6.55 -3.83 -0.03 0.44 16 22 C -0.14 -1.41 4.66 -26.65 -0.12 -1.53 16 23 N -0.60 -15.15 5.07 -10.26 -0.05 -15.20 16 24 H 0.28 7.36 8.72 -40.82 -0.36 7.00 16 25 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 26 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 27 H 0.14 3.05 5.33 -52.50 -0.28 2.77 16 28 H 0.41 6.57 8.17 -40.82 -0.33 6.23 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.74 7.54 -51.93 -0.39 0.35 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.34 2.68 8.86 -39.29 -0.35 2.34 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -30.70 308.46 -8.91 -39.61 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.18 Total: 6.43 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -3.90 Total: -8.94 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.14 Total: -54.83 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.41 Total: 23.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.70 -8.91 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330990727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.077 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds