Wall clock time and date at job start Mon Mar 30 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86795 * 120.00473 * 2 1 4 4 H 1.48500 * 109.46894 * 89.99891 * 3 2 1 5 5 H 1.48497 * 109.47401 * 210.00193 * 3 2 1 6 6 H 1.48511 * 109.46935 * 330.00303 * 3 2 1 7 7 C 1.40035 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 15.97005 * 7 2 1 9 9 C 1.41329 * 119.99939 * 195.96849 * 7 2 1 10 10 C 1.40610 * 119.79123 * 188.65711 * 9 7 2 11 11 C 1.38304 * 119.13150 * 179.77008 * 10 9 7 12 12 C 1.38697 * 118.66593 * 0.50001 * 11 10 9 13 13 C 1.39622 * 119.49760 * 359.74930 * 12 11 10 14 14 N 1.39277 * 119.57489 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99775 * 18.83855 * 14 13 12 16 16 O 1.21277 * 120.00259 * 5.59383 * 15 14 13 17 17 C 1.50699 * 120.00071 * 185.58130 * 15 14 13 18 18 C 1.53122 * 109.52506 * 299.69055 * 17 15 14 19 19 C 1.53038 * 109.27758 * 182.43625 * 18 17 15 20 20 N 1.46848 * 109.52344 * 59.18058 * 19 18 17 21 21 C 1.46850 * 111.19765 * 298.25531 * 20 19 18 22 22 C 1.53044 * 109.52288 * 61.74339 * 21 20 19 23 23 N 1.31924 * 120.85444 * 359.97438 * 13 12 11 24 24 H 0.96991 * 120.00068 * 174.93117 * 1 2 3 25 25 H 1.08000 * 120.43088 * 0.02929 * 10 9 7 26 26 H 1.08003 * 120.66432 * 180.22544 * 11 10 9 27 27 H 1.08005 * 120.24633 * 179.76650 * 12 11 10 28 28 H 0.96998 * 120.00019 * 198.84993 * 14 13 12 29 29 H 1.09004 * 109.52243 * 59.87829 * 17 15 14 30 30 H 1.08993 * 109.50193 * 302.37913 * 18 17 15 31 31 H 1.09003 * 109.50067 * 62.49586 * 18 17 15 32 32 H 1.08999 * 109.46096 * 299.16211 * 19 18 17 33 33 H 1.08998 * 109.46216 * 179.19291 * 19 18 17 34 34 H 1.00905 * 110.99960 * 62.35343 * 20 19 18 35 35 H 1.08997 * 109.46001 * 301.72966 * 21 20 19 36 36 H 1.08999 * 109.45169 * 181.75085 * 21 20 19 37 37 H 1.09001 * 109.50243 * 180.88215 * 22 21 20 38 38 H 1.08998 * 109.50437 * 60.76194 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4400 -0.7001 6 1 1.4390 2.6527 -0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 1.4987 -2.1298 -0.2583 9 6 3.3800 -1.2366 0.3362 10 6 4.1222 -2.4177 0.1596 11 6 5.4654 -2.4244 0.4890 12 6 6.0324 -1.2637 0.9939 13 6 5.2412 -0.1241 1.1512 14 7 5.8090 1.0425 1.6576 15 6 7.1469 1.2045 1.6375 16 8 7.8491 0.3823 1.0882 17 6 7.7702 2.4074 2.2974 18 6 7.2399 3.6843 1.6395 19 6 7.9217 4.8994 2.2724 20 7 9.3749 4.7989 2.0865 21 6 9.9138 3.6050 2.7503 22 6 9.2914 2.3511 2.1317 23 7 3.9629 -0.1378 0.8254 24 1 -0.4850 -0.8367 -0.0742 25 1 3.6505 -3.3068 -0.2322 26 1 6.0598 -3.3169 0.3599 27 1 7.0782 -1.2416 1.2631 28 1 5.2417 1.7382 2.0248 29 1 7.5193 2.4118 3.3581 30 1 7.4568 3.6604 0.5716 31 1 6.1626 3.7514 1.7912 32 1 7.6930 4.9303 3.3376 33 1 7.5569 5.8095 1.7962 34 1 9.6156 4.8075 1.1067 35 1 9.6757 3.6419 3.8133 36 1 10.9957 3.5750 2.6211 37 1 9.6798 1.4657 2.6352 38 1 9.5406 2.3063 1.0715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330990727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:39 Heat of formation + Delta-G solvation = -40.367047 kcal Electronic energy + Delta-G solvation = -21192.357927 eV Core-core repulsion = 18032.593368 eV Total energy + Delta-G solvation = -3159.764559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.93702 -40.28354 -38.89674 -36.31393 -35.42555 -33.24384 -32.99311 -31.81098 -31.11762 -27.39487 -25.98915 -24.01636 -23.65295 -23.42190 -21.82077 -21.06877 -20.28951 -19.01564 -18.02095 -17.25906 -16.91814 -16.39894 -16.23672 -15.80223 -15.60021 -15.44980 -15.18254 -14.85849 -14.50223 -14.32626 -14.03749 -13.80038 -13.59226 -13.20997 -12.98452 -12.80663 -12.72317 -12.20516 -12.19723 -11.88772 -11.66595 -11.60846 -11.43643 -11.07523 -10.75061 -10.42598 -9.88366 -9.36824 -9.33738 -9.23765 -6.83214 0.46759 0.72909 1.47964 1.48589 1.69586 1.82001 1.97703 2.37578 2.60096 3.32928 3.49857 3.56057 3.67008 3.74018 4.05050 4.12736 4.22335 4.39394 4.42392 4.51201 4.61951 4.65043 4.66484 4.74662 4.76626 4.91740 5.01118 5.06658 5.17263 5.28361 5.33732 5.36471 5.41061 5.69045 5.78823 5.92104 6.10198 6.26064 6.39248 6.47858 6.62373 7.00984 7.49671 7.90349 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023222 B = 0.005370 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.484660 B = 5213.319254 C = 6297.403448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.022 3.978 3 Si 1.174 2.826 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.319 1.319 7 C -0.513 4.513 8 H 0.069 0.931 9 C 0.258 3.742 10 C -0.295 4.295 11 C -0.030 4.030 12 C -0.312 4.312 13 C 0.372 3.628 14 N -0.652 5.652 15 C 0.517 3.483 16 O -0.545 6.545 17 C -0.093 4.093 18 C -0.152 4.152 19 C 0.065 3.935 20 N -0.691 5.691 21 C 0.064 3.936 22 C -0.132 4.132 23 N -0.607 5.607 24 H 0.282 0.718 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.417 0.583 29 H 0.125 0.875 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.345 0.655 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.869 9.977 6.379 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.195 4.195 3 Si 1.004 2.996 4 H -0.196 1.196 5 H -0.222 1.222 6 H -0.251 1.251 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.133 3.867 10 C -0.317 4.317 11 C -0.055 4.055 12 C -0.336 4.336 13 C 0.140 3.860 14 N -0.298 5.298 15 C 0.306 3.694 16 O -0.422 6.422 17 C -0.114 4.114 18 C -0.192 4.192 19 C -0.065 4.065 20 N -0.319 5.319 21 C -0.066 4.066 22 C -0.172 4.172 23 N -0.332 5.332 24 H 0.093 0.907 25 H 0.132 0.868 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.255 0.745 29 H 0.143 0.857 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.759 12.107 6.738 20.984 hybrid contribution -0.759 -3.732 -0.986 3.934 sum 15.000 8.375 5.752 18.117 Atomic orbital electron populations 1.70632 1.08490 1.32982 1.32500 1.28431 0.95471 1.07667 0.87969 0.81745 0.71376 0.68398 0.78100 1.19648 1.22223 1.25096 1.20676 0.94113 0.96857 1.42905 0.91267 1.18384 0.93023 0.87361 0.87935 1.21785 0.95562 0.99648 1.14674 1.21320 0.93832 0.97513 0.92792 1.21857 1.02235 0.93130 1.16397 1.18503 0.89164 0.86427 0.91933 1.43463 1.08312 1.18387 1.59597 1.21648 0.80407 0.88422 0.78899 1.90588 1.61971 1.45444 1.44164 1.21456 0.97170 0.90830 1.01958 1.22364 1.02094 0.94477 1.00266 1.22055 0.86568 0.95949 1.01943 1.60705 1.12141 1.39651 1.19421 1.22061 0.99723 0.85616 0.99156 1.22086 0.92059 1.01047 1.01983 1.66192 1.11355 1.30121 1.25578 0.90657 0.86754 0.84018 0.83629 0.74517 0.85696 0.92273 0.90026 0.89480 0.89098 0.83758 0.89756 0.89283 0.91113 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.30 13.65 21.84 0.30 -45.00 16 2 C 0.02 1.23 5.51 85.29 0.47 1.70 16 3 Si 1.17 55.40 25.93 68.60 1.78 57.18 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -14.38 6.55 99.48 0.65 -13.73 16 6 H -0.32 -14.53 7.11 99.48 0.71 -13.82 16 7 C -0.51 -28.72 9.51 23.47 0.22 -28.50 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C 0.26 13.74 6.27 40.20 0.25 13.99 16 10 C -0.29 -14.11 9.83 22.86 0.22 -13.88 16 11 C -0.03 -1.30 10.15 22.40 0.23 -1.07 16 12 C -0.31 -13.75 8.83 22.71 0.20 -13.55 16 13 C 0.37 16.71 7.51 133.23 1.00 17.71 16 14 N -0.65 -22.86 5.34 -308.38 -1.65 -24.51 16 15 C 0.52 15.98 7.00 87.66 0.61 16.59 16 16 O -0.55 -20.54 12.78 -3.02 -0.04 -20.58 16 17 C -0.09 -1.84 2.60 -11.46 -0.03 -1.87 16 18 C -0.15 -2.59 5.24 30.65 0.16 -2.43 16 19 C 0.06 0.83 6.55 86.33 0.57 1.40 16 20 N -0.69 -9.49 6.87 -513.99 -3.53 -13.02 16 21 C 0.06 0.85 6.55 86.33 0.57 1.42 16 22 C -0.13 -2.42 4.66 30.65 0.14 -2.27 16 23 N -0.61 -30.56 5.07 -186.37 -0.95 -31.51 16 24 H 0.28 15.08 8.72 -92.72 -0.81 14.27 16 25 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 26 H 0.14 4.95 8.06 -2.91 -0.02 4.92 16 27 H 0.15 6.22 5.33 -3.17 -0.02 6.20 16 28 H 0.42 12.58 8.17 -92.71 -0.76 11.83 16 29 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.33 7.54 -2.39 -0.02 1.31 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.34 4.53 8.86 -89.69 -0.79 3.74 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 Total: -1.00 -65.94 308.46 -0.02 -65.96 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -0.56 Total: 22.24 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 4.62 Total: -10.77 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -5.82 Total: -114.03 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.04 Total: -20.58 kcal Atomic # 14 Polarization: 55.40 SS G_CDS: 1.78 Total: 57.18 kcal Total: -65.94 -0.02 -65.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330990727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.596 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds