Wall clock time and date at job start Mon Mar 30 2020 02:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86806 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47355 * 89.99822 * 3 2 1 5 5 H 1.48502 * 109.47125 * 210.00039 * 3 2 1 6 6 H 1.48502 * 109.46836 * 329.99958 * 3 2 1 7 7 C 1.40023 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 16.07030 * 7 2 1 9 9 C 1.41338 * 120.00215 * 196.07119 * 7 2 1 10 10 C 1.40623 * 119.78957 * 188.93280 * 9 7 2 11 11 C 1.38305 * 119.12634 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67179 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49770 * 0.02562 * 12 11 10 14 14 N 1.39273 * 119.57670 * 180.02562 * 13 12 11 15 15 C 1.34772 * 120.00064 * 18.83675 * 14 13 12 16 16 O 1.21281 * 119.99794 * 5.59352 * 15 14 13 17 17 C 1.50696 * 120.00596 * 185.58411 * 15 14 13 18 18 H 1.09002 * 109.46890 * 320.00771 * 17 15 14 19 19 N 1.46900 * 109.47566 * 200.00711 * 17 15 14 20 20 C 1.53000 * 109.47040 * 80.00042 * 17 15 14 21 21 C 1.53781 * 113.61452 * 277.50383 * 20 17 15 22 22 C 1.53789 * 87.07921 * 220.01673 * 21 20 17 23 23 C 1.53775 * 113.61483 * 180.02562 * 20 17 15 24 24 N 1.31930 * 120.85343 * 359.72107 * 13 12 11 25 25 H 0.96997 * 119.99733 * 174.92567 * 1 2 3 26 26 H 1.07997 * 120.43425 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.65873 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.25349 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00143 * 198.84543 * 14 13 12 30 30 H 1.00899 * 110.99330 * 299.99826 * 19 17 15 31 31 H 1.00896 * 111.00038 * 63.94931 * 19 17 15 32 32 H 1.09002 * 112.84539 * 48.80626 * 20 17 15 33 33 H 1.08995 * 113.61781 * 334.56321 * 21 20 17 34 34 H 1.08996 * 113.61614 * 105.47276 * 21 20 17 35 35 H 1.09000 * 113.61354 * 270.88760 * 22 21 20 36 36 H 1.08999 * 113.69143 * 139.98877 * 22 21 20 37 37 H 1.09005 * 113.61546 * 254.53379 * 23 20 17 38 38 H 1.09001 * 113.61615 * 25.43553 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4890 2.0465 1.4000 5 1 3.5391 1.4402 -0.7001 6 1 1.4389 2.6527 -0.7001 7 6 2.0076 -1.2126 0.0005 8 1 1.4993 -2.1298 -0.2579 9 6 3.3795 -1.2364 0.3394 10 6 4.1235 -2.4159 0.1584 11 6 5.4652 -2.4238 0.4941 12 6 6.0316 -1.2628 0.9988 13 6 5.2400 -0.1233 1.1553 14 7 5.8072 1.0436 1.6615 15 6 7.1450 1.2060 1.6422 16 8 7.8477 0.3838 1.0935 17 6 7.7677 2.4092 2.3020 18 1 7.1542 3.2888 2.1067 19 7 9.1161 2.6224 1.7594 20 6 7.8565 2.1744 3.8113 21 6 6.5487 2.4803 4.5603 22 6 7.4193 3.1000 5.6663 23 6 8.4803 3.3498 4.5820 24 7 3.9630 -0.1359 0.8242 25 1 -0.4849 -0.8368 -0.0743 26 1 3.6533 -3.3040 -0.2374 27 1 6.0600 -3.3159 0.3648 28 1 7.0769 -1.2405 1.2696 29 1 5.2395 1.7394 2.0282 30 1 9.7045 1.8202 1.9279 31 1 9.0792 2.8435 0.7756 32 1 8.2900 1.2068 4.0642 33 1 5.9118 3.2027 4.0498 34 1 6.0086 1.5885 4.8780 35 1 7.7323 2.3853 6.4274 36 1 7.0042 4.0146 6.0896 37 1 9.5000 3.1601 4.9172 38 1 8.3713 4.3098 4.0773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331425211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:39 Heat of formation + Delta-G solvation = 4.824576 kcal Electronic energy + Delta-G solvation = -21262.318522 eV Core-core repulsion = 18104.513619 eV Total energy + Delta-G solvation = -3157.804903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56692 -38.94219 -37.94732 -34.72223 -33.84274 -33.51573 -31.11023 -29.71077 -27.43479 -25.65658 -25.40397 -23.94022 -21.86688 -21.53376 -19.86274 -19.64364 -18.41604 -17.51397 -16.71843 -16.23935 -15.54589 -15.25407 -14.97479 -14.50379 -14.44251 -14.11323 -13.62742 -13.43260 -13.08050 -12.58223 -12.53750 -12.27702 -12.06393 -11.92524 -11.75867 -11.24754 -10.91425 -10.74446 -10.53132 -10.41012 -10.36666 -10.04193 -9.84383 -9.60880 -9.12038 -8.77657 -8.54052 -7.95336 -7.45215 -7.30893 -4.79387 2.13020 2.63474 2.99072 3.26542 3.43860 3.57330 3.86500 4.11751 4.29519 4.46526 4.52521 4.58117 4.70118 4.86299 4.93923 5.13501 5.18779 5.50952 5.61429 5.65246 5.66543 5.82247 5.83199 5.91596 6.05904 6.09049 6.34285 6.43344 6.49358 6.52412 6.81989 7.10396 7.16963 7.23530 7.40679 7.54132 7.57328 7.74741 8.07905 8.24479 8.39429 8.62439 9.40688 9.94197 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.005670 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.030916 B = 4936.786050 C = 5626.597848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.050 3.950 3 Si 1.143 2.857 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.326 1.326 7 C -0.481 4.481 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.277 4.277 11 C -0.038 4.038 12 C -0.311 4.311 13 C 0.380 3.620 14 N -0.648 5.648 15 C 0.482 3.518 16 O -0.522 6.522 17 C 0.087 3.913 18 H 0.103 0.897 19 N -0.815 5.815 20 C -0.100 4.100 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.112 4.112 24 N -0.595 5.595 25 H 0.285 0.715 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.406 0.594 30 H 0.350 0.650 31 H 0.345 0.655 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.619 6.962 7.619 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.173 4.173 3 Si 0.976 3.024 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.258 1.258 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.150 3.850 10 C -0.299 4.299 11 C -0.062 4.062 12 C -0.336 4.336 13 C 0.149 3.851 14 N -0.293 5.293 15 C 0.267 3.733 16 O -0.397 6.397 17 C -0.029 4.029 18 H 0.121 0.879 19 N -0.343 5.343 20 C -0.119 4.119 21 C -0.179 4.179 22 C -0.182 4.182 23 C -0.150 4.150 24 N -0.319 5.319 25 H 0.096 0.904 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.154 0.846 29 H 0.242 0.758 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.414 9.259 7.921 17.394 hybrid contribution -0.150 -3.293 -0.715 3.373 sum 12.264 5.966 7.206 15.425 Atomic orbital electron populations 1.70613 1.08254 1.33063 1.30511 1.27645 0.95217 1.05921 0.88469 0.82140 0.72735 0.70122 0.77404 1.21448 1.20866 1.25829 1.20668 0.93215 0.97036 1.40410 0.89808 1.18192 0.92937 0.86051 0.87843 1.21620 0.94663 0.99918 1.13718 1.20914 0.94392 0.96301 0.94571 1.21483 1.01705 0.92972 1.17401 1.18160 0.89734 0.84714 0.92495 1.43441 1.07442 1.19273 1.59158 1.22153 0.81935 0.89148 0.80110 1.90623 1.61600 1.43904 1.43587 1.21624 0.91439 0.94726 0.95080 0.87880 1.59134 1.08901 1.44252 1.22039 1.22503 0.98566 1.00270 0.90572 1.23027 0.95937 1.01484 0.97450 1.22832 0.97705 1.00989 0.96678 1.22709 0.98250 0.98106 0.95915 1.66193 1.10303 1.30171 1.25282 0.90409 0.87711 0.87719 0.84635 0.75819 0.83638 0.84196 0.88935 0.89638 0.90964 0.90340 0.91322 0.91487 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.64 13.65 55.55 0.76 -20.88 16 2 C 0.05 1.33 5.51 -17.35 -0.10 1.24 16 3 Si 1.14 27.44 25.93 -169.99 -4.41 23.03 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.96 6.55 56.52 0.37 -6.59 16 6 H -0.33 -7.67 7.11 56.52 0.40 -7.27 16 7 C -0.48 -13.10 9.51 -37.73 -0.36 -13.46 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.27 7.23 6.27 -84.99 -0.53 6.69 16 10 C -0.28 -6.67 9.83 -38.66 -0.38 -7.05 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.31 -7.06 8.83 -38.90 -0.34 -7.40 16 13 C 0.38 8.72 7.51 -154.97 -1.16 7.55 16 14 N -0.65 -11.81 5.41 -11.40 -0.06 -11.87 16 15 C 0.48 7.74 6.90 -10.99 -0.08 7.67 16 16 O -0.52 -9.88 13.05 5.56 0.07 -9.81 16 17 C 0.09 1.00 2.92 -68.87 -0.20 0.80 16 18 H 0.10 1.05 7.94 -51.93 -0.41 0.64 16 19 N -0.82 -8.59 8.74 -5.65 -0.05 -8.64 16 20 C -0.10 -1.03 3.28 -89.81 -0.29 -1.33 16 21 C -0.14 -1.40 7.62 -25.91 -0.20 -1.59 16 22 C -0.14 -1.22 8.08 -25.93 -0.21 -1.43 16 23 C -0.11 -0.98 7.40 -25.94 -0.19 -1.17 16 24 N -0.59 -15.06 5.06 -10.25 -0.05 -15.11 16 25 H 0.28 7.35 8.73 -40.82 -0.36 6.99 16 26 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 27 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 28 H 0.14 3.00 5.33 -52.50 -0.28 2.72 16 29 H 0.41 6.56 8.83 -40.82 -0.36 6.20 16 30 H 0.35 3.82 8.58 -39.29 -0.34 3.48 16 31 H 0.35 3.55 9.06 -39.29 -0.36 3.20 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 0.79 7.96 -51.93 -0.41 0.37 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -29.97 315.83 -8.57 -38.55 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.15 Total: 10.70 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -4.44 Total: -10.72 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.60 Total: -56.51 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: -4.41 Total: 23.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.97 -8.57 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331425211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.370 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds