Wall clock time and date at job start Mon Mar 30 2020 02:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86806 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47355 * 89.99822 * 3 2 1 5 5 H 1.48502 * 109.47125 * 210.00039 * 3 2 1 6 6 H 1.48502 * 109.46836 * 329.99958 * 3 2 1 7 7 C 1.40023 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 16.07030 * 7 2 1 9 9 C 1.41338 * 120.00215 * 196.07119 * 7 2 1 10 10 C 1.40623 * 119.78957 * 188.93280 * 9 7 2 11 11 C 1.38305 * 119.12634 * 179.97438 * 10 9 7 12 12 C 1.38688 * 118.67179 * 359.97438 * 11 10 9 13 13 C 1.39628 * 119.49770 * 0.02562 * 12 11 10 14 14 N 1.39273 * 119.57670 * 180.02562 * 13 12 11 15 15 C 1.34772 * 120.00064 * 18.83675 * 14 13 12 16 16 O 1.21281 * 119.99794 * 5.59352 * 15 14 13 17 17 C 1.50696 * 120.00596 * 185.58411 * 15 14 13 18 18 H 1.09002 * 109.46890 * 320.00771 * 17 15 14 19 19 N 1.46900 * 109.47566 * 200.00711 * 17 15 14 20 20 C 1.53000 * 109.47040 * 80.00042 * 17 15 14 21 21 C 1.53781 * 113.61452 * 277.50383 * 20 17 15 22 22 C 1.53789 * 87.07921 * 220.01673 * 21 20 17 23 23 C 1.53775 * 113.61483 * 180.02562 * 20 17 15 24 24 N 1.31930 * 120.85343 * 359.72107 * 13 12 11 25 25 H 0.96997 * 119.99733 * 174.92567 * 1 2 3 26 26 H 1.07997 * 120.43425 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.65873 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.25349 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00143 * 198.84543 * 14 13 12 30 30 H 1.00899 * 110.99330 * 299.99826 * 19 17 15 31 31 H 1.00896 * 111.00038 * 63.94931 * 19 17 15 32 32 H 1.09002 * 112.84539 * 48.80626 * 20 17 15 33 33 H 1.08995 * 113.61781 * 334.56321 * 21 20 17 34 34 H 1.08996 * 113.61614 * 105.47276 * 21 20 17 35 35 H 1.09000 * 113.61354 * 270.88760 * 22 21 20 36 36 H 1.08999 * 113.69143 * 139.98877 * 22 21 20 37 37 H 1.09005 * 113.61546 * 254.53379 * 23 20 17 38 38 H 1.09001 * 113.61615 * 25.43553 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4890 2.0465 1.4000 5 1 3.5391 1.4402 -0.7001 6 1 1.4389 2.6527 -0.7001 7 6 2.0076 -1.2126 0.0005 8 1 1.4993 -2.1298 -0.2579 9 6 3.3795 -1.2364 0.3394 10 6 4.1235 -2.4159 0.1584 11 6 5.4652 -2.4238 0.4941 12 6 6.0316 -1.2628 0.9988 13 6 5.2400 -0.1233 1.1553 14 7 5.8072 1.0436 1.6615 15 6 7.1450 1.2060 1.6422 16 8 7.8477 0.3838 1.0935 17 6 7.7677 2.4092 2.3020 18 1 7.1542 3.2888 2.1067 19 7 9.1161 2.6224 1.7594 20 6 7.8565 2.1744 3.8113 21 6 6.5487 2.4803 4.5603 22 6 7.4193 3.1000 5.6663 23 6 8.4803 3.3498 4.5820 24 7 3.9630 -0.1359 0.8242 25 1 -0.4849 -0.8368 -0.0743 26 1 3.6533 -3.3040 -0.2374 27 1 6.0600 -3.3159 0.3648 28 1 7.0769 -1.2405 1.2696 29 1 5.2395 1.7394 2.0282 30 1 9.7045 1.8202 1.9279 31 1 9.0792 2.8435 0.7756 32 1 8.2900 1.2068 4.0642 33 1 5.9118 3.2027 4.0498 34 1 6.0086 1.5885 4.8780 35 1 7.7323 2.3853 6.4274 36 1 7.0042 4.0146 6.0896 37 1 9.5000 3.1601 4.9172 38 1 8.3713 4.3098 4.0773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331425211.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:38 Heat of formation + Delta-G solvation = -14.972678 kcal Electronic energy + Delta-G solvation = -21263.176995 eV Core-core repulsion = 18104.513619 eV Total energy + Delta-G solvation = -3158.663376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92216 -40.30975 -39.23408 -36.36113 -35.39106 -34.80253 -32.98508 -31.46778 -28.44428 -27.29094 -26.35739 -25.12338 -23.64543 -23.01832 -21.33826 -20.42784 -20.30344 -18.97520 -18.16152 -17.25785 -16.97480 -16.61310 -16.30139 -16.08690 -15.84498 -15.48127 -15.06781 -14.81679 -14.42017 -14.27077 -14.24115 -13.76300 -13.24109 -13.10208 -12.83765 -12.72261 -12.51502 -12.20271 -11.88508 -11.64727 -11.52600 -11.34040 -11.13851 -11.06975 -10.91219 -10.43211 -9.88677 -9.84326 -9.34612 -9.24147 -6.82745 0.45786 0.73224 1.47179 1.49112 1.69764 1.84353 1.99267 2.38204 2.60653 3.21735 3.51567 3.55526 3.74427 3.90763 3.96729 4.05698 4.13863 4.28038 4.38286 4.40378 4.64264 4.66605 4.75260 4.88891 4.92859 4.97629 5.14246 5.23641 5.32679 5.34978 5.37545 5.41046 5.63864 5.69056 5.76875 5.90848 5.95324 6.26958 6.36723 6.40000 6.62671 6.98397 7.50497 7.90801 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.005670 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.030916 B = 4936.786050 C = 5626.597848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.023 3.977 3 Si 1.174 2.826 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.319 1.319 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.258 3.742 10 C -0.295 4.295 11 C -0.031 4.031 12 C -0.311 4.311 13 C 0.371 3.629 14 N -0.646 5.646 15 C 0.483 3.517 16 O -0.549 6.549 17 C 0.100 3.900 18 H 0.124 0.876 19 N -0.805 5.805 20 C -0.102 4.102 21 C -0.147 4.147 22 C -0.138 4.138 23 C -0.102 4.102 24 N -0.607 5.607 25 H 0.282 0.718 26 H 0.113 0.887 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.417 0.583 30 H 0.349 0.651 31 H 0.349 0.651 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.792 8.481 8.655 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.195 4.195 3 Si 1.004 2.996 4 H -0.196 1.196 5 H -0.222 1.222 6 H -0.252 1.252 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.133 3.867 10 C -0.317 4.317 11 C -0.056 4.056 12 C -0.335 4.335 13 C 0.139 3.861 14 N -0.292 5.292 15 C 0.270 3.730 16 O -0.426 6.426 17 C -0.016 4.016 18 H 0.142 0.858 19 N -0.333 5.333 20 C -0.121 4.121 21 C -0.185 4.185 22 C -0.176 4.176 23 C -0.139 4.139 24 N -0.332 5.332 25 H 0.093 0.907 26 H 0.132 0.868 27 H 0.159 0.841 28 H 0.163 0.837 29 H 0.254 0.746 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.604 10.799 8.981 20.262 hybrid contribution -0.601 -3.834 -1.011 4.011 sum 14.003 6.964 7.971 17.553 Atomic orbital electron populations 1.70635 1.08501 1.32964 1.32487 1.28434 0.95464 1.07673 0.87959 0.81745 0.71377 0.68360 0.78153 1.19577 1.22190 1.25157 1.20671 0.94189 0.96831 1.42867 0.91335 1.18384 0.92999 0.87358 0.87968 1.21778 0.95592 0.99717 1.14612 1.21312 0.93852 0.97519 0.92870 1.21827 1.02151 0.93109 1.16385 1.18549 0.89142 0.86539 0.91831 1.43576 1.08415 1.18231 1.58995 1.23224 0.80775 0.89972 0.79033 1.90590 1.61908 1.45384 1.44742 1.21768 0.91578 0.92960 0.95306 0.85797 1.59173 1.08014 1.43765 1.22334 1.22525 0.99336 1.00618 0.89661 1.23106 0.95871 1.01300 0.98209 1.22811 0.97055 1.01376 0.96344 1.22669 0.98445 0.97435 0.95387 1.66197 1.11479 1.29975 1.25539 0.90679 0.86846 0.84138 0.83707 0.74596 0.83710 0.83813 0.90087 0.88670 0.92477 0.90198 0.90160 0.91072 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.25 13.65 21.84 0.30 -44.96 16 2 C 0.02 1.23 5.51 85.29 0.47 1.70 16 3 Si 1.17 55.30 25.93 68.60 1.78 57.08 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.29 -14.31 6.55 99.48 0.65 -13.66 16 6 H -0.32 -14.56 7.11 99.48 0.71 -13.85 16 7 C -0.51 -28.69 9.51 23.47 0.22 -28.47 16 8 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 9 C 0.26 13.70 6.27 40.21 0.25 13.95 16 10 C -0.29 -14.09 9.83 22.87 0.22 -13.87 16 11 C -0.03 -1.34 10.15 22.39 0.23 -1.11 16 12 C -0.31 -13.55 8.83 22.71 0.20 -13.35 16 13 C 0.37 16.52 7.51 133.23 1.00 17.52 16 14 N -0.65 -22.31 5.41 -308.38 -1.67 -23.98 16 15 C 0.48 14.46 6.90 87.66 0.60 15.06 16 16 O -0.55 -19.73 13.05 -3.03 -0.04 -19.77 16 17 C 0.10 2.01 2.92 44.17 0.13 2.14 16 18 H 0.12 2.06 7.94 -2.39 -0.02 2.04 16 19 N -0.81 -14.71 8.74 -171.80 -1.50 -16.21 16 20 C -0.10 -1.85 3.28 -10.27 -0.03 -1.88 16 21 C -0.15 -2.55 7.62 31.12 0.24 -2.31 16 22 C -0.14 -1.94 8.08 31.11 0.25 -1.69 16 23 C -0.10 -1.44 7.40 31.11 0.23 -1.21 16 24 N -0.61 -30.35 5.06 -186.35 -0.94 -31.30 16 25 H 0.28 15.07 8.73 -92.71 -0.81 14.26 16 26 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 27 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 28 H 0.15 6.11 5.33 -3.16 -0.02 6.09 16 29 H 0.42 12.53 8.83 -92.71 -0.82 11.71 16 30 H 0.35 6.77 8.58 -89.69 -0.77 6.00 16 31 H 0.35 6.21 9.06 -89.70 -0.81 5.40 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.46 7.96 -2.39 -0.02 1.44 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -63.99 315.83 0.55 -63.43 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -1.39 Total: 29.20 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.02 Total: -13.50 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -3.82 Total: -116.44 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.04 Total: -19.77 kcal Atomic # 14 Polarization: 55.30 SS G_CDS: 1.78 Total: 57.08 kcal Total: -63.99 0.55 -63.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331425211.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.458 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds