Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86807 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47067 * 270.00133 * 3 2 1 5 5 H 1.48494 * 109.47320 * 30.00424 * 3 2 1 6 6 H 1.48499 * 109.46974 * 150.00356 * 3 2 1 7 7 C 1.40026 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00373 * 179.97438 * 7 2 1 9 9 C 1.41338 * 119.99507 * 359.97438 * 7 2 1 10 10 C 1.40621 * 119.78548 * 179.97438 * 9 7 2 11 11 C 1.38305 * 119.12533 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.67361 * 359.75103 * 11 10 9 13 13 C 1.39637 * 119.49201 * 0.51828 * 12 11 10 14 14 N 1.39274 * 119.57270 * 179.74656 * 13 12 11 15 15 C 1.34770 * 119.99988 * 174.47427 * 14 13 12 16 16 O 1.21279 * 120.00106 * 4.96610 * 15 14 13 17 17 C 1.50708 * 120.00119 * 184.96707 * 15 14 13 18 18 H 1.09004 * 109.46379 * 40.00277 * 17 15 14 19 19 N 1.46908 * 109.46921 * 159.99660 * 17 15 14 20 20 C 1.52992 * 109.47194 * 280.00060 * 17 15 14 21 21 C 1.53784 * 113.61334 * 162.63458 * 20 17 15 22 22 C 1.53958 * 87.01803 * 220.04774 * 21 20 17 23 23 C 1.53774 * 113.61489 * 65.02499 * 20 17 15 24 24 N 1.31930 * 120.85393 * 359.46685 * 13 12 11 25 25 H 0.97007 * 119.99869 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.43380 * 359.97438 * 10 9 7 27 27 H 1.08008 * 120.66183 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.25965 * 180.23630 * 12 11 10 29 29 H 0.97006 * 119.99643 * 354.46965 * 14 13 12 30 30 H 1.00899 * 110.99933 * 294.51374 * 19 17 15 31 31 H 1.00899 * 110.99411 * 58.47077 * 19 17 15 32 32 H 1.09000 * 112.85223 * 293.82938 * 20 17 15 33 33 H 1.08990 * 113.61419 * 334.56400 * 21 20 17 34 34 H 1.09001 * 113.61479 * 105.47438 * 21 20 17 35 35 H 1.09003 * 113.53557 * 270.81368 * 22 21 20 36 36 H 1.08998 * 113.74511 * 139.94360 * 22 21 20 37 37 H 1.09009 * 113.61852 * 254.52886 * 23 20 17 38 38 H 1.09000 * 113.61746 * 25.43306 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6518 -0.0016 11 6 1.3032 -4.8415 -0.0011 12 6 -0.0829 -4.7934 0.0058 13 6 -0.7278 -3.5549 0.0010 14 7 -2.1196 -3.5046 0.0026 15 6 -2.7510 -2.3189 0.1104 16 8 -2.1105 -1.2890 0.1153 17 6 -4.2530 -2.2725 0.2248 18 1 -4.5930 -3.0809 0.8722 19 7 -4.6609 -0.9824 0.7970 20 6 -4.8755 -2.4345 -1.1633 21 6 -6.3631 -2.8227 -1.1299 22 6 -6.0608 -3.7658 -2.3086 23 6 -4.6097 -3.8083 -1.8011 24 7 -0.0357 -2.4317 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 3.0884 -3.6560 -0.0029 27 1 1.8215 -5.7891 -0.0015 28 1 -0.6591 -5.7068 0.0103 29 1 -2.6346 -4.3232 -0.0740 30 1 -4.3368 -0.8900 1.7481 31 1 -4.3355 -0.2154 0.2279 32 1 -4.6578 -1.5963 -1.8253 33 1 -6.6581 -3.3432 -0.2189 34 1 -7.0342 -2.0029 -1.3864 35 1 -6.1684 -3.2916 -3.2841 36 1 -6.5737 -4.7255 -2.2456 37 1 -3.8672 -3.7831 -2.5989 38 1 -4.4245 -4.5988 -1.0740 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331425720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = 37.169879 kcal Electronic energy + Delta-G solvation = -21563.317966 eV Core-core repulsion = 18406.915661 eV Total energy + Delta-G solvation = -3156.402305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91265 -38.44963 -37.27853 -34.27490 -33.32559 -32.99016 -30.32267 -29.21994 -27.07118 -25.58909 -25.45741 -23.49416 -21.66444 -21.05069 -19.47757 -19.24834 -17.76191 -16.43317 -16.17196 -15.90454 -15.37277 -14.73126 -14.48147 -14.22229 -13.88114 -13.68076 -13.52771 -12.91500 -12.85139 -12.39791 -12.10077 -11.98308 -11.79260 -11.43294 -11.17234 -10.97052 -10.66974 -10.54254 -10.47378 -10.33934 -10.22682 -9.95507 -9.68236 -9.43000 -9.03136 -8.43613 -7.97991 -7.19285 -6.97167 -6.16069 -4.41853 2.74906 3.04864 3.15387 3.17743 3.25139 3.69387 3.87853 4.04339 4.46142 4.66858 4.75503 4.86130 4.91610 5.21091 5.37705 5.40914 5.51981 5.72946 5.75648 5.88645 5.94362 6.02883 6.07009 6.10341 6.27054 6.47685 6.51071 6.67078 6.82279 6.83915 7.20558 7.22002 7.53981 7.58925 7.62280 7.79948 8.05729 8.18690 8.45859 8.72311 9.03321 9.23770 10.23235 10.45779 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.006202 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.101582 B = 4513.707309 C = 5667.538570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.656 5.656 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.305 4.305 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.369 3.631 14 N -0.663 5.663 15 C 0.440 3.560 16 O -0.415 6.415 17 C 0.084 3.916 18 H 0.090 0.910 19 N -0.820 5.820 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.144 4.144 23 C -0.139 4.139 24 N -0.473 5.473 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.342 0.658 31 H 0.349 0.651 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 -4.342 -1.348 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.275 5.275 2 C -0.171 4.171 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.328 4.328 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.130 3.870 14 N -0.310 5.310 15 C 0.220 3.780 16 O -0.278 6.278 17 C -0.032 4.032 18 H 0.108 0.892 19 N -0.348 5.348 20 C -0.111 4.111 21 C -0.158 4.158 22 C -0.181 4.181 23 C -0.177 4.177 24 N -0.192 5.192 25 H 0.082 0.918 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.872 -2.769 -1.423 12.274 hybrid contribution 1.717 -0.513 0.053 1.793 sum -10.155 -3.283 -1.370 10.760 Atomic orbital electron populations 1.70337 1.05759 1.27220 1.24192 1.26175 0.95144 1.00582 0.95182 0.86516 0.80580 0.81840 0.79020 1.19664 1.20323 1.18754 1.19579 0.94061 0.89387 1.42628 0.89990 1.18409 0.87263 0.91953 0.87865 1.21629 0.98545 0.93557 1.19113 1.20563 0.93214 0.96511 0.95796 1.20519 0.94822 0.95025 1.27995 1.18708 0.83639 0.90881 0.93730 1.43623 1.04933 1.09394 1.73090 1.22095 0.90936 0.85141 0.79815 1.91143 1.65414 1.30903 1.40384 1.21590 0.90376 0.94459 0.96823 0.89159 1.59195 1.65056 1.03242 1.07315 1.22403 0.96150 0.97992 0.94599 1.22842 0.95811 0.98893 0.98238 1.22859 0.96776 0.99936 0.98551 1.22970 0.97225 0.96907 1.00576 1.68714 1.06937 1.23246 1.20273 0.91767 0.88601 0.88664 0.89168 0.76933 0.84571 0.83683 0.88999 0.90132 0.91530 0.90420 0.91576 0.91128 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.03 8.99 55.55 0.50 -17.53 16 2 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 3 Si 0.90 19.29 29.56 -169.99 -5.02 14.27 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.43 -11.78 9.14 -37.73 -0.34 -12.13 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 9 C 0.27 7.64 6.55 -84.99 -0.56 7.09 16 10 C -0.31 -7.76 9.83 -38.66 -0.38 -8.14 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.09 9.95 -38.89 -0.39 -8.48 16 13 C 0.37 9.01 7.43 -154.96 -1.15 7.86 16 14 N -0.66 -12.89 5.09 -11.40 -0.06 -12.94 16 15 C 0.44 8.57 6.80 -10.98 -0.07 8.49 16 16 O -0.41 -10.01 11.99 5.56 0.07 -9.95 16 17 C 0.08 1.19 2.90 -68.86 -0.20 1.00 16 18 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 19 N -0.82 -11.52 9.00 -5.65 -0.05 -11.57 16 20 C -0.09 -1.17 3.35 -89.81 -0.30 -1.47 16 21 C -0.12 -1.25 7.65 -25.82 -0.20 -1.45 16 22 C -0.14 -1.40 8.09 -25.82 -0.21 -1.61 16 23 C -0.14 -1.60 6.62 -25.92 -0.17 -1.77 16 24 N -0.47 -13.26 5.74 -10.25 -0.06 -13.32 16 25 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.40 6.11 7.20 -40.82 -0.29 5.81 16 30 H 0.34 4.81 9.07 -39.29 -0.36 4.46 16 31 H 0.35 5.30 8.54 -39.29 -0.34 4.96 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 38 H 0.08 0.83 7.09 -51.93 -0.37 0.46 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -31.48 314.64 -9.47 -40.95 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -5.12 Total: 15.77 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -4.47 Total: -10.42 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: 0.33 Total: -55.36 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.48 -9.47 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331425720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.117 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds