Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86807 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47067 * 270.00133 * 3 2 1 5 5 H 1.48494 * 109.47320 * 30.00424 * 3 2 1 6 6 H 1.48499 * 109.46974 * 150.00356 * 3 2 1 7 7 C 1.40026 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00373 * 179.97438 * 7 2 1 9 9 C 1.41338 * 119.99507 * 359.97438 * 7 2 1 10 10 C 1.40621 * 119.78548 * 179.97438 * 9 7 2 11 11 C 1.38305 * 119.12533 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.67361 * 359.75103 * 11 10 9 13 13 C 1.39637 * 119.49201 * 0.51828 * 12 11 10 14 14 N 1.39274 * 119.57270 * 179.74656 * 13 12 11 15 15 C 1.34770 * 119.99988 * 174.47427 * 14 13 12 16 16 O 1.21279 * 120.00106 * 4.96610 * 15 14 13 17 17 C 1.50708 * 120.00119 * 184.96707 * 15 14 13 18 18 H 1.09004 * 109.46379 * 40.00277 * 17 15 14 19 19 N 1.46908 * 109.46921 * 159.99660 * 17 15 14 20 20 C 1.52992 * 109.47194 * 280.00060 * 17 15 14 21 21 C 1.53784 * 113.61334 * 162.63458 * 20 17 15 22 22 C 1.53958 * 87.01803 * 220.04774 * 21 20 17 23 23 C 1.53774 * 113.61489 * 65.02499 * 20 17 15 24 24 N 1.31930 * 120.85393 * 359.46685 * 13 12 11 25 25 H 0.97007 * 119.99869 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.43380 * 359.97438 * 10 9 7 27 27 H 1.08008 * 120.66183 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.25965 * 180.23630 * 12 11 10 29 29 H 0.97006 * 119.99643 * 354.46965 * 14 13 12 30 30 H 1.00899 * 110.99933 * 294.51374 * 19 17 15 31 31 H 1.00899 * 110.99411 * 58.47077 * 19 17 15 32 32 H 1.09000 * 112.85223 * 293.82938 * 20 17 15 33 33 H 1.08990 * 113.61419 * 334.56400 * 21 20 17 34 34 H 1.09001 * 113.61479 * 105.47438 * 21 20 17 35 35 H 1.09003 * 113.53557 * 270.81368 * 22 21 20 36 36 H 1.08998 * 113.74511 * 139.94360 * 22 21 20 37 37 H 1.09009 * 113.61852 * 254.52886 * 23 20 17 38 38 H 1.09000 * 113.61746 * 25.43306 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6518 -0.0016 11 6 1.3032 -4.8415 -0.0011 12 6 -0.0829 -4.7934 0.0058 13 6 -0.7278 -3.5549 0.0010 14 7 -2.1196 -3.5046 0.0026 15 6 -2.7510 -2.3189 0.1104 16 8 -2.1105 -1.2890 0.1153 17 6 -4.2530 -2.2725 0.2248 18 1 -4.5930 -3.0809 0.8722 19 7 -4.6609 -0.9824 0.7970 20 6 -4.8755 -2.4345 -1.1633 21 6 -6.3631 -2.8227 -1.1299 22 6 -6.0608 -3.7658 -2.3086 23 6 -4.6097 -3.8083 -1.8011 24 7 -0.0357 -2.4317 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 3.0884 -3.6560 -0.0029 27 1 1.8215 -5.7891 -0.0015 28 1 -0.6591 -5.7068 0.0103 29 1 -2.6346 -4.3232 -0.0740 30 1 -4.3368 -0.8900 1.7481 31 1 -4.3355 -0.2154 0.2279 32 1 -4.6578 -1.5963 -1.8253 33 1 -6.6581 -3.3432 -0.2189 34 1 -7.0342 -2.0029 -1.3864 35 1 -6.1684 -3.2916 -3.2841 36 1 -6.5737 -4.7255 -2.2456 37 1 -3.8672 -3.7831 -2.5989 38 1 -4.4245 -4.5988 -1.0740 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331425720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = 16.267527 kcal Electronic energy + Delta-G solvation = -21564.224360 eV Core-core repulsion = 18406.915661 eV Total energy + Delta-G solvation = -3157.308699 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32787 -39.92670 -38.78253 -36.01931 -34.89589 -34.52053 -32.23619 -31.05000 -28.31385 -27.36255 -26.39832 -24.83324 -23.42253 -22.74440 -20.82252 -20.41413 -19.56883 -18.00900 -17.86375 -17.03021 -16.56594 -16.33016 -16.28737 -15.58659 -15.53401 -15.36385 -14.79749 -14.64313 -14.09189 -13.87994 -13.75136 -13.24462 -12.92307 -12.78457 -12.74923 -12.59048 -12.49734 -12.33670 -11.79428 -11.56063 -11.42811 -11.30400 -11.12453 -10.89105 -10.83633 -9.91294 -9.85706 -9.02003 -8.82178 -8.07438 -6.44180 0.89611 1.23253 1.37533 1.48717 1.51423 2.11005 2.24029 2.36829 2.97185 3.38277 3.69321 3.79993 3.98225 4.02393 4.08311 4.22299 4.31277 4.39458 4.47609 4.73586 4.86287 4.88702 4.92594 4.94043 4.96742 5.06197 5.13437 5.22008 5.27090 5.37952 5.62971 5.66569 5.84793 5.90822 5.99567 6.14756 6.34594 6.37726 6.73541 6.83003 7.06843 7.67682 8.33225 8.54140 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018235 B = 0.006202 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.101582 B = 4513.707309 C = 5667.538570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.012 3.988 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.035 4.035 12 C -0.348 4.348 13 C 0.346 3.654 14 N -0.651 5.651 15 C 0.432 3.568 16 O -0.465 6.465 17 C 0.100 3.900 18 H 0.117 0.883 19 N -0.810 5.810 20 C -0.100 4.100 21 C -0.109 4.109 22 C -0.133 4.133 23 C -0.141 4.141 24 N -0.506 5.506 25 H 0.269 0.731 26 H 0.103 0.897 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.416 0.584 30 H 0.342 0.658 31 H 0.342 0.658 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 -5.908 -1.219 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.308 5.308 2 C -0.214 4.214 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.102 0.898 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.059 4.059 12 C -0.374 4.374 13 C 0.107 3.893 14 N -0.300 5.300 15 C 0.215 3.785 16 O -0.332 6.332 17 C -0.016 4.016 18 H 0.135 0.865 19 N -0.337 5.337 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.170 4.170 23 C -0.179 4.179 24 N -0.226 5.226 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.254 0.746 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.359 -4.391 -1.294 14.122 hybrid contribution 2.102 -0.200 0.008 2.111 sum -11.257 -4.591 -1.286 12.225 Atomic orbital electron populations 1.70524 1.07181 1.27846 1.25211 1.27009 0.96070 1.03892 0.94401 0.85335 0.79145 0.76878 0.79105 1.19151 1.19728 1.18063 1.19891 0.94404 0.90538 1.44995 0.89798 1.18898 0.88125 0.93342 0.88625 1.21807 0.99156 0.93921 1.20533 1.21034 0.93636 0.97282 0.93945 1.21008 0.95202 0.95882 1.25270 1.19260 0.85638 0.90993 0.93361 1.43637 1.03278 1.10689 1.72410 1.23183 0.93014 0.84284 0.78049 1.91137 1.67045 1.32550 1.42431 1.21672 0.86275 0.95258 0.98441 0.86519 1.59256 1.64191 1.03045 1.07188 1.22444 0.98287 0.98107 0.93126 1.22811 0.93572 0.99082 0.99158 1.22813 0.95231 1.00746 0.98242 1.23035 0.98083 0.96418 1.00391 1.68681 1.07169 1.25376 1.21337 0.91982 0.87913 0.84630 0.85135 0.74573 0.84586 0.84495 0.91241 0.88746 0.91357 0.90438 0.89541 0.93094 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.50 8.99 21.84 0.20 -39.30 16 2 C 0.01 0.64 5.50 85.29 0.47 1.11 16 3 Si 0.97 41.00 29.56 68.60 2.03 43.03 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 7 C -0.47 -26.95 9.14 23.47 0.21 -26.74 16 8 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.24 13.79 6.55 40.21 0.26 14.05 16 10 C -0.33 -17.01 9.83 22.87 0.22 -16.78 16 11 C -0.03 -1.53 10.15 22.39 0.23 -1.31 16 12 C -0.35 -15.00 9.95 22.72 0.23 -14.78 16 13 C 0.35 16.83 7.43 133.23 0.99 17.82 16 14 N -0.65 -24.71 5.09 -308.37 -1.57 -26.28 16 15 C 0.43 16.85 6.80 87.66 0.60 17.45 16 16 O -0.46 -23.25 11.99 -3.03 -0.04 -23.29 16 17 C 0.10 2.72 2.90 44.17 0.13 2.84 16 18 H 0.12 2.60 8.05 -2.39 -0.02 2.58 16 19 N -0.81 -22.27 9.00 -171.78 -1.55 -23.81 16 20 C -0.10 -2.41 3.35 -10.27 -0.03 -2.45 16 21 C -0.11 -1.95 7.65 31.18 0.24 -1.72 16 22 C -0.13 -2.21 8.09 31.18 0.25 -1.95 16 23 C -0.14 -2.96 6.62 31.12 0.21 -2.75 16 24 N -0.51 -29.19 5.74 -186.35 -1.07 -30.26 16 25 H 0.27 14.52 8.29 -92.70 -0.77 13.75 16 26 H 0.10 4.94 8.06 -2.91 -0.02 4.91 16 27 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 28 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.42 11.82 7.20 -92.70 -0.67 11.16 16 30 H 0.34 9.47 9.07 -89.69 -0.81 8.66 16 31 H 0.34 10.56 8.54 -89.69 -0.77 9.80 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 1.48 8.04 -2.39 -0.02 1.46 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.10 1.68 7.09 -2.39 -0.02 1.67 16 Total: -1.00 -71.62 314.64 0.86 -70.76 By element: Atomic # 1 Polarization: 45.50 SS G_CDS: -1.14 Total: 44.36 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 4.00 Total: -15.20 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -3.99 Total: -119.65 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.04 Total: -23.29 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -71.62 0.86 -70.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331425720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.023 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds