Wall clock time and date at job start Mon Mar 30 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86803 * 119.99350 * 2 1 4 4 H 1.48499 * 109.47180 * 274.98513 * 3 2 1 5 5 H 1.48496 * 109.47152 * 34.99146 * 3 2 1 6 6 H 1.48502 * 109.46699 * 154.98749 * 3 2 1 7 7 C 1.40026 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 185.90875 * 7 2 1 9 9 C 1.41330 * 120.00052 * 5.91250 * 7 2 1 10 10 C 1.40620 * 119.78587 * 174.04877 * 9 7 2 11 11 C 1.38308 * 119.12699 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.66779 * 359.72669 * 11 10 9 13 13 C 1.39628 * 119.49759 * 0.55712 * 12 11 10 14 14 N 1.39272 * 119.57851 * 179.70503 * 13 12 11 15 15 C 1.34783 * 119.99598 * 342.33107 * 14 13 12 16 16 O 1.21275 * 120.00076 * 354.30262 * 15 14 13 17 17 C 1.50701 * 119.99983 * 174.58750 * 15 14 13 18 18 C 1.52999 * 109.47284 * 185.03624 * 17 15 14 19 19 N 1.46897 * 112.84923 * 289.18451 * 18 17 15 20 20 C 1.53775 * 113.61319 * 157.87340 * 18 17 15 21 21 C 1.53787 * 87.08113 * 220.02021 * 20 18 17 22 22 C 1.53777 * 87.07917 * 25.43363 * 21 20 18 23 23 N 1.31927 * 120.84982 * 359.43272 * 13 12 11 24 24 H 0.96989 * 120.00665 * 0.02562 * 1 2 3 25 25 H 1.07988 * 120.43775 * 359.97368 * 10 9 7 26 26 H 1.08001 * 120.66688 * 180.02562 * 11 10 9 27 27 H 1.08002 * 120.25272 * 180.26683 * 12 11 10 28 28 H 0.96996 * 120.00564 * 162.32480 * 14 13 12 29 29 H 1.09003 * 109.46813 * 305.03899 * 17 15 14 30 30 H 1.08996 * 109.47296 * 65.03025 * 17 15 14 31 31 H 1.00907 * 110.99932 * 301.79710 * 19 18 17 32 32 H 1.00891 * 111.00425 * 65.75042 * 19 18 17 33 33 H 1.09001 * 113.61906 * 334.56890 * 20 18 17 34 34 H 1.08998 * 113.61604 * 105.47203 * 20 18 17 35 35 H 1.08995 * 113.61259 * 270.88699 * 21 20 18 36 36 H 1.08998 * 113.68845 * 139.99308 * 21 20 18 37 37 H 1.09000 * 113.61289 * 220.01887 * 22 21 20 38 38 H 1.09004 * 113.69268 * 89.12559 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4954 2.6199 0.8029 6 1 3.5876 1.4122 0.5920 7 6 2.0076 -1.2126 0.0005 8 1 3.0834 -1.2150 0.0968 9 6 1.3067 -2.4334 -0.1250 10 6 2.0200 -3.6388 -0.2501 11 6 1.3202 -4.8255 -0.3727 12 6 -0.0661 -4.7847 -0.3620 13 6 -0.7167 -3.5552 -0.2406 14 7 -2.1088 -3.5116 -0.2359 15 6 -2.8174 -4.5621 -0.6952 16 8 -2.2463 -5.5015 -1.2074 17 6 -4.3198 -4.5666 -0.5783 18 6 -4.8646 -5.9144 -1.0552 19 7 -4.7472 -6.0952 -2.5082 20 6 -6.2608 -6.2450 -0.5021 21 6 -5.7661 -7.6916 -0.3356 22 6 -4.3450 -7.1115 -0.2415 23 7 -0.0299 -2.4348 -0.1249 24 1 -0.4850 0.8399 -0.0004 25 1 3.0999 -3.6379 -0.2513 26 1 1.8429 -5.7656 -0.4698 27 1 -0.6380 -5.6964 -0.4516 28 1 -2.5683 -2.7254 0.0980 29 1 -4.6037 -4.4074 0.4620 30 1 -4.7346 -3.7686 -1.1941 31 1 -5.2336 -5.3633 -3.0042 32 1 -3.7795 -6.1414 -2.7899 33 1 -6.4852 -5.7489 0.4422 34 1 -7.0583 -6.1382 -1.2374 35 1 -5.9269 -8.3122 -1.2171 36 1 -6.1053 -8.1673 0.5846 37 1 -3.5959 -7.7041 -0.7665 38 1 -4.0442 -6.8519 0.7735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332076640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:46 Heat of formation + Delta-G solvation = 24.691527 kcal Electronic energy + Delta-G solvation = -20986.404814 eV Core-core repulsion = 17829.461407 eV Total energy + Delta-G solvation = -3156.943407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.35706 -38.86237 -37.48584 -34.30152 -33.31069 -31.99166 -30.46228 -30.06619 -28.53152 -25.67528 -25.49270 -23.42119 -21.70546 -21.50462 -19.78084 -18.74566 -17.54965 -17.12132 -16.24064 -15.59346 -15.40050 -15.10958 -14.89353 -14.56036 -14.39443 -13.76756 -13.46278 -13.22251 -12.87694 -12.59961 -12.27941 -12.07930 -11.92326 -11.47878 -11.28500 -11.10703 -10.91282 -10.82717 -10.67993 -10.53364 -10.17866 -10.10804 -9.88862 -9.26195 -8.97117 -8.62931 -8.07500 -7.72240 -7.13571 -6.46201 -4.54490 2.44649 2.86449 3.06216 3.09780 3.19541 3.34355 3.52810 3.92028 4.39177 4.57179 4.69910 4.74403 4.83304 4.93164 5.26651 5.34014 5.47432 5.60023 5.69425 5.80016 5.87775 5.91781 6.13402 6.24433 6.35713 6.37483 6.40043 6.73624 6.76903 6.81744 7.10471 7.27094 7.43708 7.47425 7.53815 7.82227 7.87011 8.10083 8.25952 8.62065 8.68546 8.93297 10.00901 10.27347 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.004106 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.056956 B = 6816.976392 C = 7426.982889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.279 3.721 10 C -0.288 4.288 11 C -0.050 4.050 12 C -0.314 4.314 13 C 0.354 3.646 14 N -0.647 5.647 15 C 0.511 3.489 16 O -0.517 6.517 17 C -0.164 4.164 18 C 0.112 3.888 19 N -0.823 5.823 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.119 4.119 23 N -0.508 5.508 24 H 0.270 0.730 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.134 0.866 28 H 0.406 0.594 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.335 0.665 32 H 0.358 0.642 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 -5.605 0.099 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.104 0.896 9 C 0.152 3.848 10 C -0.311 4.311 11 C -0.075 4.075 12 C -0.339 4.339 13 C 0.120 3.880 14 N -0.291 5.291 15 C 0.298 3.702 16 O -0.393 6.393 17 C -0.207 4.207 18 C 0.018 3.982 19 N -0.354 5.354 20 C -0.166 4.166 21 C -0.169 4.169 22 C -0.156 4.156 23 N -0.227 5.227 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.151 0.849 28 H 0.242 0.758 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.148 0.852 32 H 0.174 0.826 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.582 -6.055 -0.058 13.069 hybrid contribution 1.158 1.573 0.092 1.956 sum -10.424 -4.482 0.034 11.346 Atomic orbital electron populations 1.70112 1.07254 1.27531 1.29674 1.26037 0.94872 1.01031 0.93343 0.86315 0.80586 0.80886 0.79026 1.19532 1.20179 1.18493 1.19575 0.94628 0.89354 1.43244 0.89649 1.18189 0.86416 0.92087 0.88105 1.21729 0.98803 0.93830 1.16708 1.20826 0.93782 0.96620 0.96283 1.21678 0.94605 0.97724 1.19845 1.18544 0.83001 0.91024 0.95422 1.43304 1.05629 1.18898 1.61238 1.20552 0.89344 0.82322 0.78011 1.90570 1.71105 1.35202 1.42450 1.22499 0.92552 1.01192 1.04412 1.21618 0.96044 0.91444 0.89087 1.58754 1.21117 1.52569 1.02961 1.23004 0.95742 0.97344 1.00518 1.22712 0.96740 0.95993 1.01465 1.22865 0.96937 0.96524 0.99307 1.68055 1.08434 1.24234 1.21954 0.91854 0.88239 0.88347 0.84856 0.75850 0.88503 0.89057 0.85234 0.82621 0.90069 0.91208 0.89806 0.92173 0.90469 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.73 11.48 55.55 0.64 -18.09 16 2 C 0.07 1.80 5.49 -17.34 -0.10 1.70 16 3 Si 0.91 18.38 29.56 -169.99 -5.03 13.36 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.44 -11.63 9.13 -37.74 -0.34 -11.97 16 8 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.28 7.67 6.55 -85.00 -0.56 7.11 16 10 C -0.29 -7.25 9.83 -38.66 -0.38 -7.63 16 11 C -0.05 -1.19 10.15 -39.39 -0.40 -1.59 16 12 C -0.31 -7.59 8.85 -38.89 -0.34 -7.93 16 13 C 0.35 8.69 7.52 -154.97 -1.17 7.52 16 14 N -0.65 -12.65 5.41 -11.40 -0.06 -12.71 16 15 C 0.51 8.69 7.38 -10.98 -0.08 8.61 16 16 O -0.52 -10.05 10.46 5.56 0.06 -9.99 16 17 C -0.16 -1.97 5.40 -27.88 -0.15 -2.12 16 18 C 0.11 1.32 0.89 -130.79 -0.12 1.20 16 19 N -0.82 -9.92 9.21 1.39 0.01 -9.91 16 20 C -0.13 -1.25 7.44 -25.92 -0.19 -1.44 16 21 C -0.13 -1.38 8.00 -25.92 -0.21 -1.58 16 22 C -0.12 -1.49 6.13 -25.92 -0.16 -1.65 16 23 N -0.51 -13.80 7.91 -10.26 -0.08 -13.88 16 24 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 25 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 27 H 0.13 3.14 5.25 -52.61 -0.28 2.86 16 28 H 0.41 7.20 8.83 -40.82 -0.36 6.84 16 29 H 0.10 1.00 7.95 -51.93 -0.41 0.59 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.34 3.48 9.07 -39.29 -0.36 3.13 16 32 H 0.36 5.04 7.54 -39.30 -0.30 4.74 16 33 H 0.08 0.69 7.97 -51.93 -0.41 0.28 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.12 8.04 -51.93 -0.42 0.71 16 38 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -29.94 315.68 -8.93 -38.88 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -5.04 Total: 17.36 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -4.19 Total: -9.77 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.51 Total: -54.59 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.06 Total: -9.99 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.94 -8.93 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332076640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.567 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds