Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86803 * 119.99350 * 2 1 4 4 H 1.48499 * 109.47180 * 274.98513 * 3 2 1 5 5 H 1.48496 * 109.47152 * 34.99146 * 3 2 1 6 6 H 1.48502 * 109.46699 * 154.98749 * 3 2 1 7 7 C 1.40026 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00048 * 185.90875 * 7 2 1 9 9 C 1.41330 * 120.00052 * 5.91250 * 7 2 1 10 10 C 1.40620 * 119.78587 * 174.04877 * 9 7 2 11 11 C 1.38308 * 119.12699 * 180.02562 * 10 9 7 12 12 C 1.38698 * 118.66779 * 359.72669 * 11 10 9 13 13 C 1.39628 * 119.49759 * 0.55712 * 12 11 10 14 14 N 1.39272 * 119.57851 * 179.70503 * 13 12 11 15 15 C 1.34783 * 119.99598 * 342.33107 * 14 13 12 16 16 O 1.21275 * 120.00076 * 354.30262 * 15 14 13 17 17 C 1.50701 * 119.99983 * 174.58750 * 15 14 13 18 18 C 1.52999 * 109.47284 * 185.03624 * 17 15 14 19 19 N 1.46897 * 112.84923 * 289.18451 * 18 17 15 20 20 C 1.53775 * 113.61319 * 157.87340 * 18 17 15 21 21 C 1.53787 * 87.08113 * 220.02021 * 20 18 17 22 22 C 1.53777 * 87.07917 * 25.43363 * 21 20 18 23 23 N 1.31927 * 120.84982 * 359.43272 * 13 12 11 24 24 H 0.96989 * 120.00665 * 0.02562 * 1 2 3 25 25 H 1.07988 * 120.43775 * 359.97368 * 10 9 7 26 26 H 1.08001 * 120.66688 * 180.02562 * 11 10 9 27 27 H 1.08002 * 120.25272 * 180.26683 * 12 11 10 28 28 H 0.96996 * 120.00564 * 162.32480 * 14 13 12 29 29 H 1.09003 * 109.46813 * 305.03899 * 17 15 14 30 30 H 1.08996 * 109.47296 * 65.03025 * 17 15 14 31 31 H 1.00907 * 110.99932 * 301.79710 * 19 18 17 32 32 H 1.00891 * 111.00425 * 65.75042 * 19 18 17 33 33 H 1.09001 * 113.61906 * 334.56890 * 20 18 17 34 34 H 1.08998 * 113.61604 * 105.47203 * 20 18 17 35 35 H 1.08995 * 113.61259 * 270.88699 * 21 20 18 36 36 H 1.08998 * 113.68845 * 139.99308 * 21 20 18 37 37 H 1.09000 * 113.61289 * 220.01887 * 22 21 20 38 38 H 1.09004 * 113.69268 * 89.12559 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 2.3834 2.1074 -1.3948 5 1 1.4954 2.6199 0.8029 6 1 3.5876 1.4122 0.5920 7 6 2.0076 -1.2126 0.0005 8 1 3.0834 -1.2150 0.0968 9 6 1.3067 -2.4334 -0.1250 10 6 2.0200 -3.6388 -0.2501 11 6 1.3202 -4.8255 -0.3727 12 6 -0.0661 -4.7847 -0.3620 13 6 -0.7167 -3.5552 -0.2406 14 7 -2.1088 -3.5116 -0.2359 15 6 -2.8174 -4.5621 -0.6952 16 8 -2.2463 -5.5015 -1.2074 17 6 -4.3198 -4.5666 -0.5783 18 6 -4.8646 -5.9144 -1.0552 19 7 -4.7472 -6.0952 -2.5082 20 6 -6.2608 -6.2450 -0.5021 21 6 -5.7661 -7.6916 -0.3356 22 6 -4.3450 -7.1115 -0.2415 23 7 -0.0299 -2.4348 -0.1249 24 1 -0.4850 0.8399 -0.0004 25 1 3.0999 -3.6379 -0.2513 26 1 1.8429 -5.7656 -0.4698 27 1 -0.6380 -5.6964 -0.4516 28 1 -2.5683 -2.7254 0.0980 29 1 -4.6037 -4.4074 0.4620 30 1 -4.7346 -3.7686 -1.1941 31 1 -5.2336 -5.3633 -3.0042 32 1 -3.7795 -6.1414 -2.7899 33 1 -6.4852 -5.7489 0.4422 34 1 -7.0583 -6.1382 -1.2374 35 1 -5.9269 -8.3122 -1.2171 36 1 -6.1053 -8.1673 0.5846 37 1 -3.5959 -7.7041 -0.7665 38 1 -4.0442 -6.8519 0.7735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332076640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = 4.856889 kcal Electronic energy + Delta-G solvation = -20987.264909 eV Core-core repulsion = 17829.461407 eV Total energy + Delta-G solvation = -3157.803501 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.69650 -40.22597 -39.04962 -35.99177 -35.11462 -32.97282 -32.35601 -31.56793 -29.97794 -27.40724 -26.53100 -24.64610 -23.53708 -23.01428 -21.32630 -19.67173 -19.36178 -18.66499 -17.82197 -16.77291 -16.72349 -16.39684 -16.34595 -16.15185 -15.63317 -15.38595 -14.91421 -14.53064 -14.42256 -14.07880 -13.81866 -13.23428 -13.14590 -12.97745 -12.82953 -12.65839 -12.58880 -12.33301 -11.84900 -11.68747 -11.61844 -11.42313 -11.10917 -11.02399 -10.45995 -9.99839 -9.66571 -9.61956 -8.98997 -8.33781 -6.53359 0.71764 1.07496 1.41475 1.51150 1.55254 1.77054 2.09100 2.22922 2.85418 3.45400 3.52037 3.79390 3.84700 3.90427 4.04765 4.17334 4.34842 4.45169 4.53833 4.63275 4.70095 4.85957 4.88737 4.92600 4.95982 4.98674 5.15460 5.22407 5.24625 5.46603 5.52395 5.60250 5.65993 5.91896 6.05118 6.25039 6.31083 6.50953 6.58243 6.76432 6.92421 7.23567 8.08479 8.42636 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.004106 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.056956 B = 6816.976392 C = 7426.982889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.090 0.910 9 C 0.245 3.755 10 C -0.309 4.309 11 C -0.050 4.050 12 C -0.327 4.327 13 C 0.346 3.654 14 N -0.647 5.647 15 C 0.510 3.490 16 O -0.542 6.542 17 C -0.152 4.152 18 C 0.107 3.893 19 N -0.825 5.825 20 C -0.113 4.113 21 C -0.126 4.126 22 C -0.129 4.129 23 N -0.535 5.535 24 H 0.280 0.720 25 H 0.111 0.889 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.414 0.586 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.345 0.655 32 H 0.344 0.656 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 -4.829 0.401 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.500 4.500 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.332 4.332 11 C -0.075 4.075 12 C -0.352 4.352 13 C 0.110 3.890 14 N -0.292 5.292 15 C 0.299 3.701 16 O -0.419 6.419 17 C -0.194 4.194 18 C 0.013 3.987 19 N -0.356 5.356 20 C -0.151 4.151 21 C -0.163 4.163 22 C -0.167 4.167 23 N -0.254 5.254 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.251 0.749 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.060 -5.305 0.244 14.098 hybrid contribution 1.552 1.216 -0.025 1.972 sum -11.507 -4.089 0.219 12.214 Atomic orbital electron populations 1.70180 1.08785 1.29097 1.29498 1.26946 0.95788 1.04361 0.92363 0.85106 0.79153 0.75750 0.79140 1.19123 1.19026 1.17954 1.19951 0.95183 0.90335 1.44485 0.89152 1.18696 0.87267 0.93365 0.88846 1.21893 0.99526 0.93864 1.17928 1.21189 0.93894 0.97481 0.94904 1.21920 0.95110 0.97963 1.20183 1.18951 0.85095 0.90638 0.94280 1.43419 1.03843 1.20183 1.61785 1.21542 0.91252 0.80910 0.76424 1.90550 1.72169 1.35896 1.43238 1.22571 0.88033 1.02261 1.06523 1.21760 0.97530 0.90694 0.88742 1.58753 1.20169 1.53186 1.03476 1.22978 0.94318 0.96324 1.01456 1.22669 0.95026 0.96708 1.01919 1.22902 0.97519 0.97254 0.99024 1.68092 1.08631 1.25397 1.23313 0.90983 0.87047 0.85350 0.84352 0.74927 0.85991 0.86784 0.84102 0.84142 0.88069 0.90272 0.90503 0.90685 0.93344 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.24 11.48 21.84 0.25 -38.99 16 2 C 0.03 1.37 5.49 85.29 0.47 1.84 16 3 Si 0.99 37.42 29.56 68.60 2.03 39.45 16 4 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.47 -25.43 9.13 23.46 0.21 -25.21 16 8 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.24 13.83 6.55 40.21 0.26 14.09 16 10 C -0.31 -15.89 9.83 22.87 0.22 -15.67 16 11 C -0.05 -2.39 10.15 22.40 0.23 -2.17 16 12 C -0.33 -16.02 8.85 22.72 0.20 -15.82 16 13 C 0.35 17.23 7.52 133.23 1.00 18.23 16 14 N -0.65 -25.22 5.41 -308.37 -1.67 -26.89 16 15 C 0.51 16.95 7.38 87.66 0.65 17.59 16 16 O -0.54 -21.10 10.46 -3.01 -0.03 -21.13 16 17 C -0.15 -3.28 5.40 29.85 0.16 -3.12 16 18 C 0.11 2.29 0.89 4.05 0.00 2.30 16 19 N -0.83 -18.91 9.21 -149.50 -1.38 -20.29 16 20 C -0.11 -1.83 7.44 31.12 0.23 -1.60 16 21 C -0.13 -2.37 8.00 31.12 0.25 -2.12 16 22 C -0.13 -3.13 6.13 31.12 0.19 -2.94 16 23 N -0.53 -29.72 7.91 -186.37 -1.47 -31.20 16 24 H 0.28 13.01 8.29 -92.72 -0.77 12.24 16 25 H 0.11 5.25 8.06 -2.92 -0.02 5.22 16 26 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 27 H 0.14 6.59 5.25 -4.89 -0.03 6.56 16 28 H 0.41 14.52 8.83 -92.71 -0.82 13.70 16 29 H 0.12 2.10 7.95 -2.39 -0.02 2.08 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.35 6.55 9.07 -89.69 -0.81 5.74 16 32 H 0.34 9.64 7.54 -89.70 -0.68 8.97 16 33 H 0.10 1.28 7.97 -2.39 -0.02 1.26 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.44 8.04 -2.39 -0.02 1.42 16 38 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 Total: -1.00 -66.27 315.68 0.60 -65.66 By element: Atomic # 1 Polarization: 49.21 SS G_CDS: -1.21 Total: 48.00 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.08 Total: -14.61 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -4.27 Total: -117.37 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.03 Total: -21.13 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -66.27 0.60 -65.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332076640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.518 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds