Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 C 1.52998 * 109.46747 * 179.97438 * 17 15 14 19 19 H 1.08996 * 109.47375 * 304.99825 * 18 17 15 20 20 N 1.46899 * 109.47079 * 64.99977 * 18 17 15 21 21 C 1.53005 * 109.47064 * 184.99633 * 18 17 15 22 22 C 1.53001 * 117.50115 * 248.75008 * 21 18 17 23 23 C 1.52998 * 117.50014 * 180.08534 * 21 18 17 24 24 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 25 25 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 26 26 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 27 27 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 28 28 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 29 29 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 30 30 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 31 31 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 32 32 H 1.00899 * 111.00341 * 59.99883 * 20 18 17 33 33 H 1.00902 * 110.99717 * 183.94985 * 20 18 17 34 34 H 1.09005 * 115.54766 * 34.41659 * 21 18 17 35 35 H 1.08997 * 117.49352 * 359.97438 * 22 21 18 36 36 H 1.08991 * 117.49941 * 145.02257 * 22 21 18 37 37 H 1.08994 * 117.49717 * 214.97999 * 23 21 18 38 38 H 1.09002 * 117.49885 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 6 9.2897 2.3493 2.1352 19 1 9.6613 1.4001 2.5210 20 7 9.6325 2.4672 0.7116 21 6 9.9309 3.5015 2.9113 22 6 10.5892 4.6195 2.1004 23 6 11.4558 3.6191 2.8695 24 7 3.9627 -0.1379 0.8260 25 1 -0.4849 -0.8367 -0.0743 26 1 3.6505 -3.3070 -0.2314 27 1 6.0600 -3.3167 0.3599 28 1 7.0783 -1.2412 1.2628 29 1 5.2413 1.7380 2.0256 30 1 7.3876 3.3159 1.8351 31 1 7.5194 2.4087 3.3610 32 1 9.2986 3.3396 0.3302 33 1 10.6265 2.3674 0.5697 34 1 9.4299 3.7801 3.8384 35 1 10.5658 4.5340 1.0140 36 1 10.5217 5.6336 2.4942 37 1 11.9579 3.9755 3.7688 38 1 12.0023 2.8754 2.2894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332078106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = 17.478890 kcal Electronic energy + Delta-G solvation = -20760.949275 eV Core-core repulsion = 17603.693105 eV Total energy + Delta-G solvation = -3157.256170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13268 -38.80924 -37.79839 -34.46006 -33.52041 -33.40211 -31.00360 -30.30016 -28.90820 -25.43734 -24.71960 -22.78634 -21.96952 -21.60511 -19.89677 -19.65006 -18.29257 -17.26983 -16.57112 -16.31549 -15.88228 -15.31148 -15.02039 -14.83858 -14.23545 -13.75190 -13.58168 -13.46430 -12.85737 -12.52562 -12.30359 -12.12217 -12.00110 -11.89169 -11.82731 -11.64324 -11.07111 -10.80156 -10.68644 -10.26500 -10.25185 -9.90558 -9.66265 -9.05979 -9.01403 -8.69691 -8.44896 -7.85764 -7.32373 -7.22791 -4.71068 2.35600 2.73246 3.19584 3.32632 3.47207 3.52358 3.64838 3.93639 4.31072 4.36962 4.44407 4.52153 4.64305 4.66353 4.79188 5.06330 5.18521 5.25882 5.29878 5.51147 5.57186 5.60895 5.71630 5.79599 5.89836 5.95028 6.19263 6.55880 6.59394 6.65884 7.07012 7.24285 7.28526 7.35836 7.48347 7.65832 7.72065 7.86703 8.18964 8.38016 8.61646 8.73273 9.51245 10.01584 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.004406 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.787142 B = 6353.726228 C = 7130.204688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.049 3.951 3 Si 1.144 2.856 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.327 1.327 7 C -0.484 4.484 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.280 4.280 11 C -0.037 4.037 12 C -0.310 4.310 13 C 0.386 3.614 14 N -0.662 5.662 15 C 0.515 3.485 16 O -0.490 6.490 17 C -0.130 4.130 18 C 0.139 3.861 19 H 0.094 0.906 20 N -0.826 5.826 21 C -0.188 4.188 22 C -0.187 4.187 23 C -0.179 4.179 24 N -0.597 5.597 25 H 0.284 0.716 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.404 0.596 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.336 0.664 33 H 0.339 0.661 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.727 9.066 5.986 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.172 4.172 3 Si 0.977 3.023 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.260 1.260 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.151 3.849 10 C -0.303 4.303 11 C -0.061 4.061 12 C -0.335 4.335 13 C 0.155 3.845 14 N -0.308 5.308 15 C 0.301 3.699 16 O -0.362 6.362 17 C -0.171 4.171 18 C 0.027 3.973 19 H 0.112 0.888 20 N -0.356 5.356 21 C -0.209 4.209 22 C -0.224 4.224 23 C -0.216 4.216 24 N -0.322 5.322 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.156 0.844 29 H 0.239 0.761 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.020 10.072 5.662 19.752 hybrid contribution 0.668 -1.333 0.388 1.541 sum 16.688 8.739 6.050 19.785 Atomic orbital electron populations 1.70617 1.08265 1.32975 1.30968 1.27646 0.95213 1.05952 0.88408 0.82130 0.72774 0.70055 0.77353 1.21556 1.20705 1.26007 1.20643 0.93202 0.96966 1.40756 0.89906 1.18185 0.92928 0.86095 0.87703 1.21599 0.94681 0.99817 1.14155 1.20917 0.94317 0.96348 0.94563 1.21527 1.01838 0.92868 1.17222 1.18115 0.89569 0.84710 0.92135 1.43385 1.07490 1.19411 1.60478 1.20398 0.81261 0.87868 0.80372 1.90639 1.61195 1.43055 1.41320 1.21701 0.95816 0.97511 1.02040 1.20691 0.92538 0.96553 0.87543 0.88806 1.58769 1.20398 1.41836 1.14631 1.23408 0.95506 0.99720 1.02246 1.23084 1.04908 0.95316 0.99090 1.22956 0.93210 1.02574 1.02836 1.66186 1.10360 1.30230 1.25419 0.90508 0.87837 0.87780 0.84417 0.76109 0.88822 0.88368 0.84955 0.84708 0.87459 0.88614 0.88757 0.88800 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.11 13.65 55.55 0.76 -21.35 16 2 C 0.05 1.36 5.51 -17.34 -0.10 1.26 16 3 Si 1.14 27.96 25.93 -169.99 -4.41 23.55 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -7.07 6.55 56.52 0.37 -6.69 16 6 H -0.33 -7.84 7.11 56.52 0.40 -7.44 16 7 C -0.48 -13.41 9.51 -37.74 -0.36 -13.77 16 8 H 0.08 2.29 8.06 -52.48 -0.42 1.86 16 9 C 0.28 7.41 6.27 -85.00 -0.53 6.88 16 10 C -0.28 -6.90 9.83 -38.66 -0.38 -7.28 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.31 -7.18 8.83 -38.89 -0.34 -7.53 16 13 C 0.39 9.05 7.51 -154.96 -1.16 7.88 16 14 N -0.66 -12.33 5.41 -11.40 -0.06 -12.39 16 15 C 0.52 8.46 7.53 -10.98 -0.08 8.38 16 16 O -0.49 -9.63 12.15 5.57 0.07 -9.56 16 17 C -0.13 -1.40 5.33 -27.88 -0.15 -1.55 16 18 C 0.14 1.40 2.69 -67.71 -0.18 1.22 16 19 H 0.09 1.10 7.96 -51.93 -0.41 0.69 16 20 N -0.83 -8.79 7.67 -4.67 -0.04 -8.83 16 21 C -0.19 -1.45 5.70 -90.62 -0.52 -1.96 16 22 C -0.19 -1.27 9.62 -26.69 -0.26 -1.53 16 23 C -0.18 -1.25 9.94 -26.69 -0.27 -1.51 16 24 N -0.60 -15.44 5.08 -10.26 -0.05 -15.49 16 25 H 0.28 7.45 8.73 -40.82 -0.36 7.10 16 26 H 0.10 2.38 8.06 -52.48 -0.42 1.95 16 27 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.14 3.11 5.33 -52.50 -0.28 2.83 16 29 H 0.40 6.56 8.83 -40.82 -0.36 6.20 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.34 3.16 7.51 -39.29 -0.29 2.86 16 33 H 0.34 3.11 8.01 -39.29 -0.31 2.80 16 34 H 0.11 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.10 0.63 6.15 -51.93 -0.32 0.31 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.66 7.73 -51.93 -0.40 0.26 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -31.87 314.17 -8.67 -40.54 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.95 Total: 9.54 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -4.73 Total: -10.75 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.61 Total: -58.07 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 27.96 SS G_CDS: -4.41 Total: 23.55 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.87 -8.67 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.020 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds