Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 C 1.52998 * 109.46747 * 179.97438 * 17 15 14 19 19 H 1.08996 * 109.47375 * 304.99825 * 18 17 15 20 20 N 1.46899 * 109.47079 * 64.99977 * 18 17 15 21 21 C 1.53005 * 109.47064 * 184.99633 * 18 17 15 22 22 C 1.53001 * 117.50115 * 248.75008 * 21 18 17 23 23 C 1.52998 * 117.50014 * 180.08534 * 21 18 17 24 24 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 25 25 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 26 26 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 27 27 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 28 28 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 29 29 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 30 30 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 31 31 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 32 32 H 1.00899 * 111.00341 * 59.99883 * 20 18 17 33 33 H 1.00902 * 110.99717 * 183.94985 * 20 18 17 34 34 H 1.09005 * 115.54766 * 34.41659 * 21 18 17 35 35 H 1.08997 * 117.49352 * 359.97438 * 22 21 18 36 36 H 1.08991 * 117.49941 * 145.02257 * 22 21 18 37 37 H 1.08994 * 117.49717 * 214.97999 * 23 21 18 38 38 H 1.09002 * 117.49885 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 6 9.2897 2.3493 2.1352 19 1 9.6613 1.4001 2.5210 20 7 9.6325 2.4672 0.7116 21 6 9.9309 3.5015 2.9113 22 6 10.5892 4.6195 2.1004 23 6 11.4558 3.6191 2.8695 24 7 3.9627 -0.1379 0.8260 25 1 -0.4849 -0.8367 -0.0743 26 1 3.6505 -3.3070 -0.2314 27 1 6.0600 -3.3167 0.3599 28 1 7.0783 -1.2412 1.2628 29 1 5.2413 1.7380 2.0256 30 1 7.3876 3.3159 1.8351 31 1 7.5194 2.4087 3.3610 32 1 9.2986 3.3396 0.3302 33 1 10.6265 2.3674 0.5697 34 1 9.4299 3.7801 3.8384 35 1 10.5658 4.5340 1.0140 36 1 10.5217 5.6336 2.4942 37 1 11.9579 3.9755 3.7688 38 1 12.0023 2.8754 2.2894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332078106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = -3.755327 kcal Electronic energy + Delta-G solvation = -20761.870060 eV Core-core repulsion = 17603.693105 eV Total energy + Delta-G solvation = -3158.176955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58827 -40.04714 -39.03627 -36.16128 -35.28795 -34.28842 -32.91385 -31.71384 -30.24685 -27.29074 -25.79057 -23.67099 -23.40816 -23.17092 -21.27550 -20.55966 -20.22918 -18.78297 -17.86934 -17.28910 -16.86448 -16.66704 -16.33817 -16.24034 -15.90589 -15.37390 -15.00203 -14.80966 -14.31037 -14.20168 -14.04729 -13.70366 -12.97845 -12.88015 -12.81145 -12.68870 -12.46962 -12.34157 -12.13334 -11.82077 -11.50261 -11.24330 -11.01549 -10.87774 -10.52493 -10.33778 -9.82101 -9.47074 -9.30164 -9.13613 -6.78182 0.58711 0.79674 1.52233 1.63732 1.83976 1.94260 2.06316 2.42317 2.66036 2.87890 3.52196 3.61853 3.74438 3.80702 4.01626 4.08448 4.13817 4.31372 4.41895 4.50136 4.52536 4.71829 4.72704 4.76697 4.78291 4.88043 5.04672 5.09880 5.23758 5.24819 5.38341 5.43778 5.50711 5.76668 5.86631 5.99462 6.33971 6.39274 6.49293 6.65742 6.70078 7.27210 7.58012 7.94371 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027613 B = 0.004406 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.787142 B = 6353.726228 C = 7130.204688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.021 3.979 3 Si 1.177 2.823 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.321 1.321 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.258 3.742 10 C -0.299 4.299 11 C -0.032 4.032 12 C -0.309 4.309 13 C 0.376 3.624 14 N -0.660 5.660 15 C 0.513 3.487 16 O -0.523 6.523 17 C -0.120 4.120 18 C 0.143 3.857 19 H 0.074 0.926 20 N -0.845 5.845 21 C -0.188 4.188 22 C -0.181 4.181 23 C -0.181 4.181 24 N -0.609 5.609 25 H 0.281 0.719 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.416 0.584 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.343 0.657 33 H 0.345 0.655 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.909 10.758 7.127 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.196 4.196 3 Si 1.007 2.993 4 H -0.197 1.197 5 H -0.222 1.222 6 H -0.253 1.253 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.133 3.867 10 C -0.321 4.321 11 C -0.056 4.056 12 C -0.333 4.333 13 C 0.144 3.856 14 N -0.307 5.307 15 C 0.302 3.698 16 O -0.397 6.397 17 C -0.160 4.160 18 C 0.030 3.970 19 H 0.092 0.908 20 N -0.377 5.377 21 C -0.208 4.208 22 C -0.218 4.218 23 C -0.218 4.218 24 N -0.335 5.335 25 H 0.092 0.908 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.253 0.747 30 H 0.134 0.866 31 H 0.147 0.853 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.213 11.788 6.832 22.745 hybrid contribution 0.218 -1.932 0.044 1.945 sum 18.431 9.856 6.876 22.002 Atomic orbital electron populations 1.70639 1.08498 1.32871 1.32912 1.28458 0.95476 1.07747 0.87919 0.81704 0.71317 0.68243 0.78082 1.19651 1.22198 1.25286 1.20645 0.94173 0.96754 1.43180 0.91476 1.18377 0.92998 0.87420 0.87889 1.21755 0.95632 0.99608 1.15091 1.21315 0.93767 0.97594 0.92902 1.21877 1.02283 0.92995 1.16160 1.18524 0.88958 0.86625 0.91480 1.43555 1.08575 1.18341 1.60209 1.21486 0.80053 0.88865 0.79349 1.90609 1.61581 1.44771 1.42744 1.21800 0.95710 0.95133 1.03316 1.20575 0.92081 0.96720 0.87588 0.90810 1.58773 1.21095 1.42499 1.15293 1.23249 0.95848 0.99189 1.02530 1.23138 1.04061 0.95486 0.99154 1.23017 0.92847 1.02640 1.03252 1.66193 1.11569 1.30019 1.25680 0.90785 0.87018 0.84229 0.83475 0.74674 0.86602 0.85326 0.84223 0.84081 0.86287 0.88504 0.87873 0.87982 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.15 13.65 21.84 0.30 -45.85 16 2 C 0.02 1.19 5.51 85.29 0.47 1.66 16 3 Si 1.18 56.36 25.93 68.60 1.78 58.14 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -14.62 6.55 99.48 0.65 -13.97 16 6 H -0.32 -14.83 7.11 99.48 0.71 -14.12 16 7 C -0.51 -29.32 9.51 23.47 0.22 -29.09 16 8 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 9 C 0.26 14.00 6.27 40.21 0.25 14.25 16 10 C -0.30 -14.61 9.83 22.87 0.22 -14.38 16 11 C -0.03 -1.38 10.15 22.40 0.23 -1.15 16 12 C -0.31 -13.78 8.83 22.71 0.20 -13.58 16 13 C 0.38 17.08 7.51 133.23 1.00 18.08 16 14 N -0.66 -23.07 5.41 -308.38 -1.67 -24.74 16 15 C 0.51 15.59 7.53 87.66 0.66 16.25 16 16 O -0.52 -19.60 12.15 -2.99 -0.04 -19.64 16 17 C -0.12 -2.15 5.33 29.85 0.16 -2.00 16 18 C 0.14 2.51 2.69 44.92 0.12 2.63 16 19 H 0.07 1.60 7.96 -2.39 -0.02 1.58 16 20 N -0.84 -16.29 7.67 -168.68 -1.29 -17.58 16 21 C -0.19 -2.30 5.70 -10.79 -0.06 -2.36 16 22 C -0.18 -1.93 9.62 30.62 0.29 -1.64 16 23 C -0.18 -2.07 9.94 30.62 0.30 -1.76 16 24 N -0.61 -31.09 5.08 -186.36 -0.95 -32.04 16 25 H 0.28 15.26 8.73 -92.71 -0.81 14.45 16 26 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 27 H 0.14 5.02 8.06 -2.91 -0.02 4.99 16 28 H 0.15 6.35 5.33 -3.19 -0.02 6.34 16 29 H 0.42 12.37 8.83 -92.70 -0.82 11.55 16 30 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.34 5.63 7.51 -89.69 -0.67 4.96 16 33 H 0.34 5.79 8.01 -89.69 -0.72 5.07 16 34 H 0.12 1.21 8.11 -2.38 -0.02 1.19 16 35 H 0.10 1.02 6.15 -2.39 -0.01 1.00 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 1.10 7.73 -2.39 -0.02 1.08 16 Total: -1.00 -68.81 314.17 1.02 -67.79 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -1.19 Total: 27.00 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 4.08 Total: -13.08 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -3.61 Total: -120.21 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.04 Total: -19.64 kcal Atomic # 14 Polarization: 56.36 SS G_CDS: 1.78 Total: 58.14 kcal Total: -68.81 1.02 -67.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.038 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds