Wall clock time and date at job start Mon Mar 30 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86804 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47002 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47252 * 119.99555 * 3 2 1 6 6 H 1.48504 * 109.46939 * 239.99647 * 3 2 1 7 7 C 1.40028 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 4.83121 * 7 2 1 9 9 C 1.41334 * 120.00064 * 184.82182 * 7 2 1 10 10 C 1.40618 * 119.78893 * 184.86462 * 9 7 2 11 11 C 1.38303 * 119.12835 * 179.77258 * 10 9 7 12 12 C 1.38698 * 118.67081 * 0.50069 * 11 10 9 13 13 C 1.39629 * 119.49431 * 359.75081 * 12 11 10 14 14 N 1.39278 * 119.57353 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99777 * 339.10154 * 14 13 12 16 16 O 1.21273 * 120.00056 * 3.70986 * 15 14 13 17 17 C 1.50696 * 119.99639 * 183.71497 * 15 14 13 18 18 C 1.53004 * 109.47126 * 179.97438 * 17 15 14 19 19 H 1.08996 * 109.46854 * 54.99402 * 18 17 15 20 20 N 1.46900 * 109.46690 * 294.99781 * 18 17 15 21 21 C 1.53000 * 109.47343 * 175.00070 * 18 17 15 22 22 C 1.52999 * 117.49625 * 248.74916 * 21 18 17 23 23 C 1.52996 * 117.49904 * 180.09000 * 21 18 17 24 24 N 1.31924 * 120.85478 * 359.97438 * 13 12 11 25 25 H 0.97001 * 120.00084 * 174.98513 * 1 2 3 26 26 H 1.07994 * 120.43234 * 0.03386 * 10 9 7 27 27 H 1.07998 * 120.66385 * 180.22912 * 11 10 9 28 28 H 1.07999 * 120.25137 * 179.76331 * 12 11 10 29 29 H 0.97004 * 119.99593 * 159.09891 * 14 13 12 30 30 H 1.09000 * 109.47201 * 299.99481 * 17 15 14 31 31 H 1.09005 * 109.47476 * 59.99702 * 17 15 14 32 32 H 1.00898 * 111.00326 * 299.99482 * 20 18 17 33 33 H 1.00901 * 110.99743 * 63.95865 * 20 18 17 34 34 H 1.09002 * 115.54941 * 34.41426 * 21 18 17 35 35 H 1.08998 * 117.50240 * 359.97438 * 22 21 18 36 36 H 1.08994 * 117.49967 * 145.02270 * 22 21 18 37 37 H 1.09002 * 117.49436 * 214.97614 * 23 21 18 38 38 H 1.09004 * 117.49889 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0076 -1.2127 0.0005 8 1 1.4705 -2.1463 -0.0778 9 6 3.4172 -1.2148 0.1034 10 6 4.1233 -2.4264 0.0006 11 6 5.5028 -2.4120 0.0985 12 6 6.1426 -1.1991 0.3061 13 6 5.3850 -0.0304 0.4051 14 7 6.0258 1.1887 0.6129 15 6 7.2707 1.2162 1.1286 16 8 7.8589 0.1788 1.3489 17 6 7.9316 2.5362 1.4317 18 6 9.3283 2.2875 2.0048 19 1 9.8980 1.6642 1.3156 20 7 9.2115 1.6049 3.3003 21 6 10.0467 3.6248 2.1959 22 6 11.2394 3.9225 1.2850 23 6 11.4678 3.5888 2.7614 24 7 4.0702 -0.0657 0.3033 25 1 -0.4850 -0.8368 -0.0734 26 1 3.5957 -3.3554 -0.1570 27 1 6.0702 -3.3276 0.0194 28 1 7.2185 -1.1588 0.3903 29 1 5.5761 2.0178 0.3865 30 1 8.0133 3.1205 0.5152 31 1 7.3328 3.0838 2.1596 32 1 8.6870 2.1630 3.9571 33 1 8.7984 0.6908 3.1913 34 1 9.4116 4.4627 2.4835 35 1 11.5126 3.1655 0.5499 36 1 11.3893 4.9562 0.9738 37 1 11.7679 4.4033 3.4207 38 1 11.8909 2.6124 2.9976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332078107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:12 Heat of formation + Delta-G solvation = 10.739854 kcal Electronic energy + Delta-G solvation = -20770.434893 eV Core-core repulsion = 17612.886496 eV Total energy + Delta-G solvation = -3157.548397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41556 -38.61643 -37.71026 -34.76716 -33.92994 -33.56261 -31.16489 -30.25499 -28.74188 -25.49912 -24.59342 -22.47331 -22.09863 -21.76859 -20.31728 -19.91417 -18.41130 -17.44580 -16.71654 -15.93638 -15.67113 -15.42608 -15.16149 -14.68693 -14.22964 -13.80830 -13.66796 -13.64991 -13.13998 -12.89420 -12.68867 -12.26705 -11.93479 -11.82668 -11.66660 -11.29518 -11.06655 -10.88991 -10.47577 -10.38653 -10.33986 -10.06699 -9.72115 -9.28731 -9.20072 -8.70965 -8.60875 -7.80474 -7.54769 -7.27482 -4.83261 2.12427 2.58883 2.93897 3.18507 3.47053 3.57997 3.61740 3.91196 4.33171 4.41730 4.54163 4.56595 4.61842 4.81717 4.98817 5.00113 5.22301 5.30036 5.46632 5.49212 5.50154 5.67600 5.80678 5.82148 5.99135 6.02493 6.13529 6.39718 6.46828 6.51064 7.05917 7.12224 7.18003 7.38351 7.48683 7.52319 7.57624 7.71242 8.05474 8.21965 8.36755 8.59544 9.34381 9.94625 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.004403 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.997643 B = 6358.017404 C = 7098.637875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.043 3.957 3 Si 1.155 2.845 4 H -0.332 1.332 5 H -0.281 1.281 6 H -0.295 1.295 7 C -0.476 4.476 8 H 0.084 0.916 9 C 0.272 3.728 10 C -0.275 4.275 11 C -0.036 4.036 12 C -0.313 4.313 13 C 0.381 3.619 14 N -0.653 5.653 15 C 0.514 3.486 16 O -0.515 6.515 17 C -0.177 4.177 18 C 0.141 3.859 19 H 0.088 0.912 20 N -0.841 5.841 21 C -0.152 4.152 22 C -0.181 4.181 23 C -0.159 4.159 24 N -0.599 5.599 25 H 0.284 0.716 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.146 0.854 29 H 0.407 0.593 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.333 0.667 33 H 0.357 0.643 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.557 8.365 2.593 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.179 4.179 3 Si 0.991 3.009 4 H -0.266 1.266 5 H -0.209 1.209 6 H -0.223 1.223 7 C -0.508 4.508 8 H 0.102 0.898 9 C 0.148 3.852 10 C -0.298 4.298 11 C -0.060 4.060 12 C -0.338 4.338 13 C 0.151 3.849 14 N -0.297 5.297 15 C 0.301 3.699 16 O -0.391 6.391 17 C -0.219 4.219 18 C 0.028 3.972 19 H 0.106 0.894 20 N -0.373 5.373 21 C -0.171 4.171 22 C -0.219 4.219 23 C -0.196 4.196 24 N -0.325 5.325 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.163 0.837 29 H 0.242 0.758 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.175 0.825 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.004 9.910 2.926 19.050 hybrid contribution -1.038 -2.192 -0.504 2.477 sum 14.967 7.718 2.422 17.013 Atomic orbital electron populations 1.70641 1.08164 1.32861 1.30995 1.27781 0.95340 1.06187 0.88563 0.81842 0.70746 0.69664 0.78677 1.26553 1.20870 1.22343 1.20736 0.90360 0.96381 1.43304 0.89828 1.18279 0.93451 0.85940 0.87519 1.21625 0.94039 0.98344 1.15746 1.20968 0.94145 0.96590 0.94337 1.21745 1.01392 0.91424 1.19238 1.18160 0.88658 0.84379 0.93703 1.43347 1.15977 1.08672 1.61675 1.20696 0.80874 0.91705 0.76609 1.90555 1.63130 1.34015 1.51405 1.22634 0.99402 0.95382 1.04460 1.20710 0.91754 0.93126 0.91598 0.89350 1.58887 1.60757 1.08137 1.09510 1.22234 0.91113 0.97972 1.05741 1.23017 1.02502 1.02278 0.94057 1.22793 0.98207 1.03121 0.95484 1.65997 1.06793 1.29812 1.29862 0.90524 0.87665 0.87568 0.83679 0.75820 0.88030 0.88593 0.85513 0.82546 0.88060 0.88761 0.88948 0.89269 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.79 13.65 55.55 0.76 -21.03 16 2 C 0.04 1.15 5.52 -17.35 -0.10 1.05 16 3 Si 1.16 27.50 25.62 -169.99 -4.35 23.14 16 4 H -0.33 -7.82 7.11 56.52 0.40 -7.41 16 5 H -0.28 -6.55 6.60 56.52 0.37 -6.18 16 6 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.48 -12.93 9.57 -37.73 -0.36 -13.29 16 8 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 9 C 0.27 7.13 6.40 -84.99 -0.54 6.58 16 10 C -0.28 -6.55 9.83 -38.66 -0.38 -6.93 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.31 -6.94 8.90 -38.89 -0.35 -7.28 16 13 C 0.38 8.59 7.51 -154.97 -1.16 7.42 16 14 N -0.65 -11.60 5.41 -11.40 -0.06 -11.66 16 15 C 0.51 7.86 7.53 -10.99 -0.08 7.78 16 16 O -0.52 -9.16 10.81 5.56 0.06 -9.10 16 17 C -0.18 -1.84 5.33 -27.88 -0.15 -1.99 16 18 C 0.14 1.48 2.62 -67.71 -0.18 1.31 16 19 H 0.09 1.08 7.71 -51.93 -0.40 0.68 16 20 N -0.84 -9.61 9.08 -4.67 -0.04 -9.65 16 21 C -0.15 -1.33 5.33 -90.62 -0.48 -1.81 16 22 C -0.18 -1.45 10.18 -26.69 -0.27 -1.73 16 23 C -0.16 -1.36 10.13 -26.70 -0.27 -1.63 16 24 N -0.60 -15.02 4.54 -10.25 -0.05 -15.07 16 25 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16 26 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.15 3.11 5.17 -52.92 -0.27 2.84 16 29 H 0.41 6.35 8.82 -40.82 -0.36 5.99 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.33 3.36 9.00 -39.29 -0.35 3.01 16 33 H 0.36 4.84 6.89 -39.29 -0.27 4.57 16 34 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.09 0.77 8.05 -51.93 -0.42 0.36 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -29.73 316.27 -8.70 -38.43 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.06 Total: 11.87 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -4.72 Total: -11.69 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.61 Total: -57.42 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.06 Total: -9.10 kcal Atomic # 14 Polarization: 27.50 SS G_CDS: -4.35 Total: 23.14 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.73 -8.70 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.170 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds