Wall clock time and date at job start Mon Mar 30 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86804 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47002 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47252 * 119.99555 * 3 2 1 6 6 H 1.48504 * 109.46939 * 239.99647 * 3 2 1 7 7 C 1.40028 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 4.83121 * 7 2 1 9 9 C 1.41334 * 120.00064 * 184.82182 * 7 2 1 10 10 C 1.40618 * 119.78893 * 184.86462 * 9 7 2 11 11 C 1.38303 * 119.12835 * 179.77258 * 10 9 7 12 12 C 1.38698 * 118.67081 * 0.50069 * 11 10 9 13 13 C 1.39629 * 119.49431 * 359.75081 * 12 11 10 14 14 N 1.39278 * 119.57353 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99777 * 339.10154 * 14 13 12 16 16 O 1.21273 * 120.00056 * 3.70986 * 15 14 13 17 17 C 1.50696 * 119.99639 * 183.71497 * 15 14 13 18 18 C 1.53004 * 109.47126 * 179.97438 * 17 15 14 19 19 H 1.08996 * 109.46854 * 54.99402 * 18 17 15 20 20 N 1.46900 * 109.46690 * 294.99781 * 18 17 15 21 21 C 1.53000 * 109.47343 * 175.00070 * 18 17 15 22 22 C 1.52999 * 117.49625 * 248.74916 * 21 18 17 23 23 C 1.52996 * 117.49904 * 180.09000 * 21 18 17 24 24 N 1.31924 * 120.85478 * 359.97438 * 13 12 11 25 25 H 0.97001 * 120.00084 * 174.98513 * 1 2 3 26 26 H 1.07994 * 120.43234 * 0.03386 * 10 9 7 27 27 H 1.07998 * 120.66385 * 180.22912 * 11 10 9 28 28 H 1.07999 * 120.25137 * 179.76331 * 12 11 10 29 29 H 0.97004 * 119.99593 * 159.09891 * 14 13 12 30 30 H 1.09000 * 109.47201 * 299.99481 * 17 15 14 31 31 H 1.09005 * 109.47476 * 59.99702 * 17 15 14 32 32 H 1.00898 * 111.00326 * 299.99482 * 20 18 17 33 33 H 1.00901 * 110.99743 * 63.95865 * 20 18 17 34 34 H 1.09002 * 115.54941 * 34.41426 * 21 18 17 35 35 H 1.08998 * 117.50240 * 359.97438 * 22 21 18 36 36 H 1.08994 * 117.49967 * 145.02270 * 22 21 18 37 37 H 1.09002 * 117.49436 * 214.97614 * 23 21 18 38 38 H 1.09004 * 117.49889 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0951 1.6965 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0076 -1.2127 0.0005 8 1 1.4705 -2.1463 -0.0778 9 6 3.4172 -1.2148 0.1034 10 6 4.1233 -2.4264 0.0006 11 6 5.5028 -2.4120 0.0985 12 6 6.1426 -1.1991 0.3061 13 6 5.3850 -0.0304 0.4051 14 7 6.0258 1.1887 0.6129 15 6 7.2707 1.2162 1.1286 16 8 7.8589 0.1788 1.3489 17 6 7.9316 2.5362 1.4317 18 6 9.3283 2.2875 2.0048 19 1 9.8980 1.6642 1.3156 20 7 9.2115 1.6049 3.3003 21 6 10.0467 3.6248 2.1959 22 6 11.2394 3.9225 1.2850 23 6 11.4678 3.5888 2.7614 24 7 4.0702 -0.0657 0.3033 25 1 -0.4850 -0.8368 -0.0734 26 1 3.5957 -3.3554 -0.1570 27 1 6.0702 -3.3276 0.0194 28 1 7.2185 -1.1588 0.3903 29 1 5.5761 2.0178 0.3865 30 1 8.0133 3.1205 0.5152 31 1 7.3328 3.0838 2.1596 32 1 8.6870 2.1630 3.9571 33 1 8.7984 0.6908 3.1913 34 1 9.4116 4.4627 2.4835 35 1 11.5126 3.1655 0.5499 36 1 11.3893 4.9562 0.9738 37 1 11.7679 4.4033 3.4207 38 1 11.8909 2.6124 2.9976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332078107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:12 Heat of formation + Delta-G solvation = -8.625023 kcal Electronic energy + Delta-G solvation = -20771.274617 eV Core-core repulsion = 17612.886496 eV Total energy + Delta-G solvation = -3158.388121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.81069 -40.13273 -38.66916 -36.33452 -35.39827 -34.81125 -33.01025 -31.77276 -29.97731 -27.33179 -25.66179 -23.73281 -23.41809 -23.05647 -21.42864 -21.07546 -20.30701 -18.89755 -18.09906 -17.06102 -16.93511 -16.64175 -16.40837 -16.21861 -15.56958 -15.42598 -14.94125 -14.81634 -14.48819 -14.40211 -14.22603 -13.76266 -13.71153 -12.94008 -12.81237 -12.59373 -12.28226 -12.23599 -11.89457 -11.73080 -11.67359 -11.16305 -11.11765 -11.00324 -10.65846 -10.41878 -9.72506 -9.59773 -9.38669 -9.20104 -6.85160 0.48628 0.70702 1.51105 1.53812 1.72220 1.82896 2.07004 2.44192 2.64405 2.94447 3.45646 3.53339 3.68210 3.80690 4.05639 4.13077 4.21464 4.30523 4.37246 4.47761 4.53312 4.64745 4.66995 4.73538 4.79229 4.91105 4.94605 5.15973 5.32112 5.36367 5.36942 5.40258 5.44357 5.71284 5.78692 5.91046 6.26092 6.29489 6.39426 6.61508 6.63281 7.03648 7.46993 7.92205 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027661 B = 0.004403 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.997643 B = 6358.017404 C = 7098.637875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.012 3.988 3 Si 1.189 2.811 4 H -0.329 1.329 5 H -0.274 1.274 6 H -0.292 1.292 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.257 3.743 10 C -0.294 4.294 11 C -0.029 4.029 12 C -0.310 4.310 13 C 0.372 3.628 14 N -0.652 5.652 15 C 0.514 3.486 16 O -0.539 6.539 17 C -0.163 4.163 18 C 0.143 3.857 19 H 0.069 0.931 20 N -0.846 5.846 21 C -0.151 4.151 22 C -0.175 4.175 23 C -0.165 4.165 24 N -0.611 5.611 25 H 0.280 0.720 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.418 0.582 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.341 0.659 33 H 0.345 0.655 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.007 10.228 2.856 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.204 4.204 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.202 1.202 6 H -0.220 1.220 7 C -0.542 4.542 8 H 0.085 0.915 9 C 0.132 3.868 10 C -0.316 4.316 11 C -0.053 4.053 12 C -0.334 4.334 13 C 0.141 3.859 14 N -0.298 5.298 15 C 0.304 3.696 16 O -0.416 6.416 17 C -0.205 4.205 18 C 0.030 3.970 19 H 0.087 0.913 20 N -0.377 5.377 21 C -0.169 4.169 22 C -0.212 4.212 23 C -0.202 4.202 24 N -0.337 5.337 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.160 0.840 28 H 0.175 0.825 29 H 0.255 0.745 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.482 11.798 3.199 22.159 hybrid contribution -1.532 -2.853 -0.551 3.285 sum 16.950 8.945 2.648 19.348 Atomic orbital electron populations 1.70669 1.08495 1.32696 1.33350 1.28656 0.95608 1.08145 0.88009 0.81434 0.70091 0.67544 0.78887 1.26252 1.20161 1.21974 1.20728 0.91318 0.96017 1.46132 0.91513 1.18448 0.93396 0.87353 0.87611 1.21774 0.95115 0.98004 1.16696 1.21374 0.93497 0.98089 0.92381 1.22124 1.02064 0.91601 1.17594 1.18552 0.88085 0.86543 0.92689 1.43484 1.16689 1.07522 1.62109 1.21636 0.79687 0.93277 0.74995 1.90527 1.63404 1.35615 1.52053 1.22678 0.98769 0.92653 1.06382 1.20691 0.91782 0.93750 0.90773 0.91290 1.58874 1.60847 1.07711 1.10310 1.22210 0.91224 0.97259 1.06256 1.23081 1.01590 1.03061 0.93515 1.22799 0.98228 1.02811 0.96374 1.66004 1.08086 1.29540 1.30104 0.90891 0.86925 0.83985 0.82545 0.74499 0.85246 0.86210 0.84600 0.84004 0.86345 0.89267 0.87337 0.88084 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.08 13.65 21.84 0.30 -45.79 16 2 C 0.01 0.66 5.52 85.29 0.47 1.13 16 3 Si 1.19 55.41 25.62 68.60 1.76 57.17 16 4 H -0.33 -15.00 7.11 99.48 0.71 -14.30 16 5 H -0.27 -12.31 6.60 99.48 0.66 -11.66 16 6 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 7 C -0.51 -28.49 9.57 23.47 0.22 -28.26 16 8 H 0.07 3.81 8.05 -2.91 -0.02 3.78 16 9 C 0.26 13.51 6.40 40.21 0.26 13.77 16 10 C -0.29 -13.82 9.83 22.87 0.22 -13.60 16 11 C -0.03 -1.21 10.15 22.40 0.23 -0.98 16 12 C -0.31 -13.03 8.90 22.72 0.20 -12.83 16 13 C 0.37 16.07 7.51 133.23 1.00 17.07 16 14 N -0.65 -21.43 5.41 -308.39 -1.67 -23.10 16 15 C 0.51 14.27 7.53 87.66 0.66 14.93 16 16 O -0.54 -17.99 10.81 -3.01 -0.03 -18.02 16 17 C -0.16 -2.77 5.33 29.85 0.16 -2.61 16 18 C 0.14 2.62 2.62 44.92 0.12 2.74 16 19 H 0.07 1.55 7.71 -2.39 -0.02 1.53 16 20 N -0.85 -17.65 9.08 -168.67 -1.53 -19.18 16 21 C -0.15 -2.13 5.33 -10.79 -0.06 -2.19 16 22 C -0.18 -2.29 10.18 30.62 0.31 -1.98 16 23 C -0.16 -2.44 10.13 30.62 0.31 -2.13 16 24 N -0.61 -30.06 4.54 -186.35 -0.85 -30.91 16 25 H 0.28 15.13 8.72 -92.71 -0.81 14.32 16 26 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 27 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 28 H 0.16 6.31 5.17 -9.80 -0.05 6.26 16 29 H 0.42 11.76 8.82 -92.71 -0.82 10.94 16 30 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.34 6.05 9.00 -89.70 -0.81 5.24 16 33 H 0.34 8.83 6.89 -89.69 -0.62 8.21 16 34 H 0.12 1.32 8.11 -2.39 -0.02 1.30 16 35 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -64.58 316.27 0.83 -63.75 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -1.26 Total: 31.02 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 4.11 Total: -14.94 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -3.75 Total: -118.97 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.03 Total: -18.02 kcal Atomic # 14 Polarization: 55.41 SS G_CDS: 1.76 Total: 57.17 kcal Total: -64.58 0.83 -63.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.123 kcal (2) G-P(sol) polarization free energy of solvation -64.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds