Wall clock time and date at job start Mon Mar 30 2020 02:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86795 * 120.00291 * 2 1 4 4 H 1.48495 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47320 * 300.00540 * 3 2 1 6 6 H 1.48497 * 109.47421 * 60.00185 * 3 2 1 7 7 C 1.40025 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.40620 * 119.79049 * 179.72856 * 9 7 2 11 11 C 1.38300 * 119.12942 * 180.27709 * 10 9 7 12 12 C 1.38698 * 118.66768 * 0.02562 * 11 10 9 13 13 C 1.39628 * 119.50056 * 359.97438 * 12 11 10 14 14 N 1.39274 * 119.57536 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99429 * 174.73165 * 14 13 12 16 16 O 1.21266 * 120.00467 * 5.16805 * 15 14 13 17 17 C 1.50709 * 119.99286 * 185.16742 * 15 14 13 18 18 N 1.46899 * 110.01622 * 33.61232 * 17 15 14 19 19 C 1.54261 * 110.03438 * 272.16697 * 17 15 14 20 20 C 1.54896 * 104.19437 * 217.11015 * 19 17 15 21 21 C 1.54881 * 102.74641 * 37.94300 * 20 19 17 22 22 C 1.53872 * 110.02852 * 155.00066 * 17 15 14 23 23 N 1.31930 * 120.85069 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99834 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.43473 * 0.25144 * 10 9 7 26 26 H 1.08000 * 120.66624 * 179.97438 * 11 10 9 27 27 H 1.08002 * 120.24846 * 180.02562 * 12 11 10 28 28 H 0.96998 * 120.00328 * 354.72720 * 14 13 12 29 29 H 1.00898 * 110.99874 * 300.69305 * 18 17 15 30 30 H 1.00900 * 111.00256 * 64.64884 * 18 17 15 31 31 H 1.09011 * 110.48574 * 335.78590 * 19 17 15 32 32 H 1.09000 * 110.48836 * 98.42608 * 19 17 15 33 33 H 1.09001 * 110.75009 * 279.62223 * 20 19 17 34 34 H 1.08999 * 110.75496 * 156.25862 * 20 19 17 35 35 H 1.09008 * 110.48354 * 203.38060 * 21 20 19 36 36 H 1.08996 * 110.49055 * 80.73799 * 21 20 19 37 37 H 1.08996 * 110.03462 * 238.57276 * 22 17 15 38 38 H 1.09007 * 110.03196 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8829 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6519 -0.0069 11 6 1.3030 -4.8415 -0.0126 12 6 -0.0831 -4.7933 -0.0125 13 6 -0.7280 -3.5548 -0.0061 14 7 -2.1198 -3.5045 -0.0054 15 6 -2.7511 -2.3192 0.1080 16 8 -2.1109 -1.2893 0.1150 17 6 -4.2529 -2.2737 0.2260 18 7 -4.7349 -3.4473 0.9663 19 6 -4.8923 -2.2336 -1.1773 20 6 -6.1105 -1.2911 -1.0129 21 6 -5.5739 -0.2042 -0.0488 22 6 -4.6863 -0.9833 0.9435 23 7 -0.0358 -2.4317 -0.0006 24 1 -0.4850 0.8401 0.0004 25 1 3.0883 -3.6562 -0.0076 26 1 1.8212 -5.7891 -0.0180 27 1 -0.6593 -5.7067 -0.0165 28 1 -2.6348 -4.3225 -0.0865 29 1 -4.4681 -4.3024 0.5019 30 1 -4.4036 -3.4349 1.9193 31 1 -4.1902 -1.8262 -1.9050 32 1 -5.2182 -3.2297 -1.4767 33 1 -6.9519 -1.8217 -0.5672 34 1 -6.3921 -0.8532 -1.9705 35 1 -6.3974 0.2808 0.4755 36 1 -4.9820 0.5309 -0.5941 37 1 -5.2550 -1.2279 1.8406 38 1 -3.8105 -0.3898 1.2059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332078108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:36 Heat of formation + Delta-G solvation = 16.114470 kcal Electronic energy + Delta-G solvation = -21781.225413 eV Core-core repulsion = 18623.910077 eV Total energy + Delta-G solvation = -3157.315336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.00472 -38.18308 -36.52033 -34.25531 -33.23996 -32.35506 -30.33357 -29.04144 -28.54363 -26.75034 -25.55565 -22.76545 -21.40795 -20.68452 -20.40519 -18.67494 -17.81111 -16.75751 -16.26825 -15.46138 -15.19000 -14.66547 -14.49029 -14.47355 -13.94376 -13.64612 -13.34899 -12.97148 -12.88364 -12.11335 -12.04632 -11.56094 -11.21920 -11.13055 -10.97419 -10.96533 -10.90346 -10.76568 -10.66508 -10.51636 -10.37634 -10.00743 -9.79055 -9.69679 -9.05392 -8.34551 -8.00222 -7.19887 -7.00851 -6.17226 -4.43146 2.73067 3.03242 3.15732 3.19139 3.23424 3.66457 3.72544 4.03986 4.56828 4.70361 4.77191 4.91643 5.07218 5.39864 5.55444 5.65565 5.81320 5.82571 5.97754 6.00896 6.04793 6.07654 6.18348 6.21136 6.43860 6.45077 6.51578 6.64181 6.77019 6.81532 7.08811 7.20721 7.37822 7.52029 7.59031 7.77810 8.03104 8.16581 8.42606 8.71036 9.01708 9.21592 10.20897 10.44900 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.007031 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.827643 B = 3981.297603 C = 5420.929822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.270 3.730 10 C -0.304 4.304 11 C -0.036 4.036 12 C -0.359 4.359 13 C 0.370 3.630 14 N -0.668 5.668 15 C 0.443 3.557 16 O -0.402 6.402 17 C 0.102 3.898 18 N -0.829 5.829 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.107 4.107 23 N -0.473 5.473 24 H 0.272 0.728 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.393 0.607 29 H 0.336 0.664 30 H 0.345 0.655 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 -2.781 -0.008 10.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.172 4.172 3 Si 0.720 3.280 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.455 4.455 8 H 0.101 0.899 9 C 0.145 3.855 10 C -0.328 4.328 11 C -0.060 4.060 12 C -0.385 4.385 13 C 0.132 3.868 14 N -0.316 5.316 15 C 0.222 3.778 16 O -0.263 6.263 17 C 0.005 3.995 18 N -0.361 5.361 19 C -0.143 4.143 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.145 4.145 23 N -0.192 5.192 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.227 0.773 29 H 0.150 0.850 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.487 -0.663 -0.118 11.506 hybrid contribution 1.634 -1.050 0.053 1.943 sum -9.853 -1.713 -0.065 10.001 Atomic orbital electron populations 1.70335 1.05775 1.27305 1.24003 1.26185 0.95148 1.00633 0.95209 0.86455 0.80931 0.82177 0.78403 1.18571 1.20039 1.20032 1.19625 0.94112 0.89356 1.42381 0.89893 1.18414 0.87195 0.91995 0.87928 1.21632 0.98576 0.93536 1.19013 1.20560 0.93177 0.96536 0.95765 1.20496 0.94846 0.94925 1.28184 1.18645 0.83357 0.90943 0.93901 1.43497 1.05117 1.09305 1.73698 1.21820 0.90648 0.85048 0.80281 1.91122 1.65208 1.30696 1.39309 1.21828 0.89382 0.92657 0.95585 1.59050 1.66797 1.03759 1.06473 1.22326 0.97303 1.00383 0.94245 1.22412 0.97378 0.96426 0.99058 1.22290 0.98561 0.97705 0.97114 1.22139 1.00584 0.93814 0.97968 1.68703 1.06994 1.23210 1.20274 0.91670 0.88547 0.88624 0.89201 0.77308 0.85045 0.84188 0.90948 0.91050 0.91170 0.91916 0.91880 0.91414 0.91114 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.11 9.00 55.55 0.50 -17.61 16 2 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 3 Si 0.90 19.29 29.56 -169.99 -5.02 14.27 16 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.42 -11.71 9.14 -37.74 -0.34 -12.05 16 8 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 9 C 0.27 7.61 6.55 -84.99 -0.56 7.06 16 10 C -0.30 -7.71 9.83 -38.66 -0.38 -8.09 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.36 -8.08 9.95 -38.89 -0.39 -8.46 16 13 C 0.37 9.02 7.43 -154.97 -1.15 7.87 16 14 N -0.67 -12.98 5.25 -11.40 -0.06 -13.04 16 15 C 0.44 8.77 6.55 -10.98 -0.07 8.70 16 16 O -0.40 -9.93 11.34 5.57 0.06 -9.87 16 17 C 0.10 1.50 1.09 -131.64 -0.14 1.35 16 18 N -0.83 -9.88 8.63 0.72 0.01 -9.87 16 19 C -0.10 -1.40 6.06 -25.07 -0.15 -1.55 16 20 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 21 C -0.12 -1.52 6.83 -25.08 -0.17 -1.69 16 22 C -0.11 -1.57 6.08 -25.62 -0.16 -1.72 16 23 N -0.47 -13.28 5.74 -10.25 -0.06 -13.34 16 24 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 25 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.39 5.96 7.15 -40.82 -0.29 5.67 16 29 H 0.34 3.52 7.48 -39.29 -0.29 3.23 16 30 H 0.34 4.09 9.00 -39.29 -0.35 3.73 16 31 H 0.07 1.11 7.85 -51.92 -0.41 0.70 16 32 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 38 H 0.09 1.52 6.71 -51.93 -0.35 1.18 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -31.79 309.90 -9.11 -40.90 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -4.18 Total: -9.92 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.39 Total: -53.86 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.06 Total: -9.87 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.79 -9.11 -40.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.017 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds