Wall clock time and date at job start Mon Mar 30 2020 02:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86795 * 120.00291 * 2 1 4 4 H 1.48495 * 109.47407 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47320 * 300.00540 * 3 2 1 6 6 H 1.48497 * 109.47421 * 60.00185 * 3 2 1 7 7 C 1.40025 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99914 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.40620 * 119.79049 * 179.72856 * 9 7 2 11 11 C 1.38300 * 119.12942 * 180.27709 * 10 9 7 12 12 C 1.38698 * 118.66768 * 0.02562 * 11 10 9 13 13 C 1.39628 * 119.50056 * 359.97438 * 12 11 10 14 14 N 1.39274 * 119.57536 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99429 * 174.73165 * 14 13 12 16 16 O 1.21266 * 120.00467 * 5.16805 * 15 14 13 17 17 C 1.50709 * 119.99286 * 185.16742 * 15 14 13 18 18 N 1.46899 * 110.01622 * 33.61232 * 17 15 14 19 19 C 1.54261 * 110.03438 * 272.16697 * 17 15 14 20 20 C 1.54896 * 104.19437 * 217.11015 * 19 17 15 21 21 C 1.54881 * 102.74641 * 37.94300 * 20 19 17 22 22 C 1.53872 * 110.02852 * 155.00066 * 17 15 14 23 23 N 1.31930 * 120.85069 * 0.02562 * 13 12 11 24 24 H 0.97003 * 119.99834 * 359.97438 * 1 2 3 25 25 H 1.07999 * 120.43473 * 0.25144 * 10 9 7 26 26 H 1.08000 * 120.66624 * 179.97438 * 11 10 9 27 27 H 1.08002 * 120.24846 * 180.02562 * 12 11 10 28 28 H 0.96998 * 120.00328 * 354.72720 * 14 13 12 29 29 H 1.00898 * 110.99874 * 300.69305 * 18 17 15 30 30 H 1.00900 * 111.00256 * 64.64884 * 18 17 15 31 31 H 1.09011 * 110.48574 * 335.78590 * 19 17 15 32 32 H 1.09000 * 110.48836 * 98.42608 * 19 17 15 33 33 H 1.09001 * 110.75009 * 279.62223 * 20 19 17 34 34 H 1.08999 * 110.75496 * 156.25862 * 20 19 17 35 35 H 1.09008 * 110.48354 * 203.38060 * 21 20 19 36 36 H 1.08996 * 110.49055 * 80.73799 * 21 20 19 37 37 H 1.08996 * 110.03462 * 238.57276 * 22 17 15 38 38 H 1.09007 * 110.03196 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7015 1.3463 -0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8829 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0875 -1.2128 -0.0010 9 6 1.3008 -2.4367 -0.0005 10 6 2.0083 -3.6519 -0.0069 11 6 1.3030 -4.8415 -0.0126 12 6 -0.0831 -4.7933 -0.0125 13 6 -0.7280 -3.5548 -0.0061 14 7 -2.1198 -3.5045 -0.0054 15 6 -2.7511 -2.3192 0.1080 16 8 -2.1109 -1.2893 0.1150 17 6 -4.2529 -2.2737 0.2260 18 7 -4.7349 -3.4473 0.9663 19 6 -4.8923 -2.2336 -1.1773 20 6 -6.1105 -1.2911 -1.0129 21 6 -5.5739 -0.2042 -0.0488 22 6 -4.6863 -0.9833 0.9435 23 7 -0.0358 -2.4317 -0.0006 24 1 -0.4850 0.8401 0.0004 25 1 3.0883 -3.6562 -0.0076 26 1 1.8212 -5.7891 -0.0180 27 1 -0.6593 -5.7067 -0.0165 28 1 -2.6348 -4.3225 -0.0865 29 1 -4.4681 -4.3024 0.5019 30 1 -4.4036 -3.4349 1.9193 31 1 -4.1902 -1.8262 -1.9050 32 1 -5.2182 -3.2297 -1.4767 33 1 -6.9519 -1.8217 -0.5672 34 1 -6.3921 -0.8532 -1.9705 35 1 -6.3974 0.2808 0.4755 36 1 -4.9820 0.5309 -0.5941 37 1 -5.2550 -1.2279 1.8406 38 1 -3.8105 -0.3898 1.2059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332078108.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:35 Heat of formation + Delta-G solvation = -5.385281 kcal Electronic energy + Delta-G solvation = -21782.157713 eV Core-core repulsion = 18623.910077 eV Total energy + Delta-G solvation = -3158.247635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49075 -39.88219 -37.98288 -36.02744 -35.01174 -33.57771 -32.25086 -30.85340 -29.67790 -27.95451 -27.42483 -24.42454 -23.27787 -22.06257 -21.65921 -20.21488 -19.47506 -18.25340 -18.01129 -16.69983 -16.45050 -16.31457 -16.24627 -15.82237 -15.59942 -15.33707 -14.84927 -14.61380 -14.14730 -13.84390 -13.80204 -12.95245 -12.82298 -12.72378 -12.58902 -12.36899 -12.26054 -12.05755 -11.97955 -11.86651 -11.78849 -11.54435 -11.41662 -11.22855 -10.90366 -9.93968 -9.77224 -9.00141 -8.86811 -8.09124 -6.45975 0.86975 1.21059 1.36757 1.47766 1.51464 2.06732 2.21618 2.23244 2.95125 3.47316 3.56365 3.66649 3.84854 4.02277 4.25821 4.36895 4.48503 4.54020 4.68958 4.71166 4.81185 4.84474 4.92229 4.94153 5.01493 5.07448 5.13521 5.20739 5.25244 5.29025 5.50578 5.63727 5.79042 5.88595 5.97935 6.13724 6.33388 6.42165 6.69827 6.80358 7.04097 7.64092 8.30442 8.52594 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.007031 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.827643 B = 3981.297603 C = 5420.929822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.465 4.465 8 H 0.085 0.915 9 C 0.235 3.765 10 C -0.329 4.329 11 C -0.034 4.034 12 C -0.348 4.348 13 C 0.346 3.654 14 N -0.656 5.656 15 C 0.433 3.567 16 O -0.455 6.455 17 C 0.118 3.882 18 N -0.812 5.812 19 C -0.104 4.104 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.108 4.108 23 N -0.508 5.508 24 H 0.269 0.731 25 H 0.104 0.896 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.414 0.586 29 H 0.348 0.652 30 H 0.348 0.652 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -4.298 -0.031 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.215 4.215 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.110 3.890 10 C -0.352 4.352 11 C -0.058 4.058 12 C -0.373 4.373 13 C 0.108 3.892 14 N -0.306 5.306 15 C 0.215 3.785 16 O -0.320 6.320 17 C 0.021 3.979 18 N -0.345 5.345 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.156 4.156 22 C -0.146 4.146 23 N -0.227 5.227 24 H 0.080 0.920 25 H 0.122 0.878 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.252 0.748 29 H 0.163 0.837 30 H 0.161 0.839 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.213 -2.252 -0.142 13.404 hybrid contribution 2.104 -0.780 0.079 2.246 sum -11.108 -3.032 -0.064 11.515 Atomic orbital electron populations 1.70532 1.07275 1.27879 1.25257 1.27042 0.96036 1.04027 0.94368 0.85277 0.79654 0.77109 0.78421 1.17659 1.19549 1.19559 1.19933 0.94453 0.90465 1.44744 0.89639 1.18908 0.88017 0.93430 0.88677 1.21816 0.99223 0.93862 1.20319 1.21039 0.93582 0.97329 0.93885 1.20990 0.95241 0.95742 1.25310 1.19196 0.85324 0.91090 0.93623 1.43473 1.03536 1.10561 1.72985 1.22959 0.92816 0.84232 0.78518 1.91119 1.66911 1.32501 1.41427 1.21715 0.85354 0.93882 0.96982 1.59046 1.65715 1.03261 1.06429 1.22339 0.97383 1.02052 0.92422 1.22397 0.96815 0.95490 0.99534 1.22295 0.98621 0.97696 0.96990 1.22127 0.99592 0.93599 0.99283 1.68669 1.07305 1.25425 1.21322 0.91987 0.87776 0.84501 0.85055 0.74811 0.83723 0.83852 0.93629 0.88770 0.89286 0.90549 0.89608 0.93307 0.89423 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.27 9.00 21.84 0.20 -40.07 16 2 C 0.01 0.58 5.50 85.29 0.47 1.05 16 3 Si 0.97 41.29 29.56 68.60 2.03 43.32 16 4 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.47 -26.88 9.14 23.47 0.21 -26.66 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.24 13.79 6.55 40.21 0.26 14.05 16 10 C -0.33 -16.86 9.83 22.87 0.22 -16.63 16 11 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 12 C -0.35 -14.90 9.95 22.72 0.23 -14.68 16 13 C 0.35 16.89 7.43 133.23 0.99 17.88 16 14 N -0.66 -25.08 5.25 -308.37 -1.62 -26.70 16 15 C 0.43 17.43 6.55 87.66 0.57 18.00 16 16 O -0.46 -23.68 11.34 -2.99 -0.03 -23.71 16 17 C 0.12 3.33 1.09 3.51 0.00 3.34 16 18 N -0.81 -17.19 8.63 -151.65 -1.31 -18.50 16 19 C -0.10 -2.60 6.06 31.67 0.19 -2.41 16 20 C -0.11 -2.18 6.91 31.89 0.22 -1.96 16 21 C -0.12 -2.89 6.83 31.66 0.22 -2.67 16 22 C -0.11 -3.12 6.08 31.32 0.19 -2.93 16 23 N -0.51 -29.51 5.74 -186.36 -1.07 -30.58 16 24 H 0.27 14.81 8.29 -92.71 -0.77 14.05 16 25 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 26 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 27 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 28 H 0.41 11.63 7.15 -92.71 -0.66 10.96 16 29 H 0.35 6.12 7.48 -89.70 -0.67 5.44 16 30 H 0.35 7.43 9.00 -89.69 -0.81 6.62 16 31 H 0.04 1.39 7.85 -2.38 -0.02 1.38 16 32 H 0.09 1.92 8.02 -2.39 -0.02 1.90 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 2.20 7.91 -2.39 -0.02 2.18 16 38 H 0.05 1.76 6.71 -2.38 -0.02 1.74 16 Total: -1.00 -73.62 309.90 1.17 -72.45 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -1.03 Total: 38.69 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.01 Total: -14.89 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -3.80 Total: -115.85 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.03 Total: -23.71 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -73.62 1.17 -72.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078108.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.063 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds