Wall clock time and date at job start Mon Mar 30 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86796 * 119.99866 * 2 1 4 4 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47124 * 120.00241 * 3 2 1 6 6 H 1.48504 * 109.47228 * 240.00075 * 3 2 1 7 7 C 1.40025 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00197 * 4.43008 * 7 2 1 9 9 C 1.41339 * 120.00322 * 184.43359 * 7 2 1 10 10 C 1.40612 * 119.79013 * 185.40281 * 9 7 2 11 11 C 1.38304 * 119.12712 * 179.97438 * 10 9 7 12 12 C 1.38695 * 118.67331 * 0.02562 * 11 10 9 13 13 C 1.39636 * 119.49243 * 359.97438 * 12 11 10 14 14 N 1.39273 * 119.57191 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00333 * 341.35111 * 14 13 12 16 16 O 1.21283 * 119.99461 * 4.47414 * 15 14 13 17 17 C 1.50694 * 120.00572 * 184.46980 * 15 14 13 18 18 C 1.52999 * 109.47394 * 185.44087 * 17 15 14 19 19 C 1.52999 * 115.55104 * 277.52065 * 18 17 15 20 20 N 1.46897 * 109.46992 * 293.51499 * 19 18 17 21 21 C 1.53001 * 117.49687 * 131.81566 * 18 17 15 22 22 C 1.53001 * 117.49734 * 63.19288 * 18 17 15 23 23 N 1.31926 * 120.85119 * 359.71958 * 13 12 11 24 24 H 0.97011 * 120.00185 * 174.96472 * 1 2 3 25 25 H 1.07993 * 120.43941 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.66724 * 180.02562 * 11 10 9 27 27 H 1.07999 * 120.25619 * 179.97438 * 12 11 10 28 28 H 0.97001 * 119.99543 * 161.35309 * 14 13 12 29 29 H 1.09006 * 109.47095 * 305.44705 * 17 15 14 30 30 H 1.08997 * 109.46675 * 65.43969 * 17 15 14 31 31 H 1.09003 * 109.46967 * 53.51497 * 19 18 17 32 32 H 1.09002 * 109.46903 * 173.51138 * 19 18 17 33 33 H 1.00897 * 111.00434 * 62.66059 * 20 19 18 34 34 H 1.00901 * 110.99602 * 186.61387 * 20 19 18 35 35 H 1.08997 * 117.49934 * 359.97438 * 21 18 17 36 36 H 1.08994 * 117.49886 * 145.01965 * 21 18 17 37 37 H 1.08994 * 117.50128 * 214.97672 * 22 18 17 38 38 H 1.09005 * 117.49825 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 1.2763 2.7464 -0.0006 5 1 3.0951 1.6964 1.2124 6 1 3.0951 1.6964 -1.2125 7 6 2.0075 -1.2126 -0.0005 8 1 1.4700 -2.1466 -0.0732 9 6 3.4177 -1.2146 0.0941 10 6 4.1240 -2.4250 -0.0212 11 6 5.5037 -2.4109 0.0730 12 6 6.1444 -1.1982 0.2792 13 6 5.3869 -0.0299 0.3854 14 7 6.0286 1.1888 0.5920 15 6 7.2932 1.2143 1.0574 16 8 7.9007 0.1772 1.2193 17 6 7.9523 2.5314 1.3764 18 6 9.4156 2.2913 1.7533 19 6 9.6634 1.8728 3.2039 20 7 9.3142 2.9829 4.1002 21 6 10.4716 3.1712 1.0812 22 6 10.3335 1.7009 0.6810 23 7 4.0719 -0.0649 0.2866 24 1 -0.4851 -0.8369 -0.0737 25 1 3.5960 -3.3534 -0.1812 26 1 6.0710 -3.3259 -0.0124 27 1 7.2208 -1.1577 0.3571 28 1 5.5652 2.0193 0.4009 29 1 7.9039 3.1827 0.5037 30 1 7.4349 3.0037 2.2114 31 1 9.0472 1.0058 3.4421 32 1 10.7151 1.6177 3.3338 33 1 8.3335 3.2096 4.0301 34 1 9.5693 2.7719 5.0534 35 1 10.1239 3.9207 0.3703 36 1 11.3431 3.4521 1.6725 37 1 11.1141 1.0146 1.0090 38 1 9.8950 1.4838 -0.2931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332078467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:42 Heat of formation + Delta-G solvation = 16.813481 kcal Electronic energy + Delta-G solvation = -21025.477893 eV Core-core repulsion = 17868.192868 eV Total energy + Delta-G solvation = -3157.285025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38264 -38.71351 -37.51575 -34.54811 -33.53321 -33.49441 -31.12179 -30.47064 -28.68131 -25.45636 -25.24921 -22.68104 -22.30931 -21.77560 -20.07860 -19.07299 -18.33833 -17.18568 -16.56179 -16.40270 -15.52090 -15.15518 -14.95606 -14.73205 -14.32225 -13.89983 -13.76708 -13.54241 -13.03974 -12.85745 -12.68379 -12.27144 -12.12209 -11.90186 -11.52867 -11.22223 -11.17375 -10.85407 -10.39501 -10.33885 -10.01651 -10.00616 -9.68192 -9.21979 -9.03971 -8.78744 -8.56727 -7.77389 -7.49149 -7.24217 -4.80368 2.20965 2.62438 3.02344 3.20010 3.49822 3.60978 3.78874 3.94935 4.36107 4.40947 4.53579 4.60110 4.68140 4.83353 4.88174 5.13928 5.37161 5.44714 5.50215 5.60874 5.65791 5.78006 5.85610 5.91455 6.04308 6.07965 6.11701 6.44371 6.50256 6.57220 6.93099 7.12148 7.17691 7.23585 7.41283 7.54758 7.63886 7.75432 8.10088 8.28299 8.45564 8.63120 9.38522 9.97459 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.004910 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.592197 B = 5701.679764 C = 6310.555569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.043 3.957 3 Si 1.155 2.845 4 H -0.332 1.332 5 H -0.281 1.281 6 H -0.295 1.295 7 C -0.477 4.477 8 H 0.083 0.917 9 C 0.273 3.727 10 C -0.278 4.278 11 C -0.036 4.036 12 C -0.319 4.319 13 C 0.384 3.616 14 N -0.656 5.656 15 C 0.512 3.488 16 O -0.505 6.505 17 C -0.103 4.103 18 C -0.104 4.104 19 C 0.099 3.901 20 N -0.849 5.849 21 C -0.162 4.162 22 C -0.155 4.155 23 N -0.600 5.600 24 H 0.283 0.717 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.151 0.849 28 H 0.406 0.594 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.339 0.661 34 H 0.340 0.660 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.651 6.805 3.353 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.178 4.178 3 Si 0.991 3.009 4 H -0.266 1.266 5 H -0.209 1.209 6 H -0.223 1.223 7 C -0.510 4.510 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.300 4.300 11 C -0.061 4.061 12 C -0.343 4.343 13 C 0.154 3.846 14 N -0.301 5.301 15 C 0.299 3.701 16 O -0.379 6.379 17 C -0.143 4.143 18 C -0.104 4.104 19 C -0.032 4.032 20 N -0.378 5.378 21 C -0.199 4.199 22 C -0.193 4.193 23 N -0.326 5.326 24 H 0.094 0.906 25 H 0.122 0.878 26 H 0.123 0.877 27 H 0.168 0.832 28 H 0.241 0.759 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.852 8.757 3.188 18.388 hybrid contribution -0.599 -3.032 0.215 3.098 sum 15.253 5.725 3.404 16.644 Atomic orbital electron populations 1.70644 1.08171 1.32814 1.31180 1.27774 0.95327 1.06176 0.88521 0.81834 0.70714 0.69638 0.78728 1.26598 1.20893 1.22319 1.20731 0.90339 0.96353 1.43536 0.89886 1.18268 0.93433 0.85935 0.87440 1.21613 0.94043 0.98365 1.15970 1.20977 0.94127 0.96611 0.94359 1.21939 1.01798 0.91365 1.19235 1.18178 0.88625 0.84430 0.93398 1.43362 1.14399 1.08466 1.63843 1.20680 0.80818 0.91824 0.76773 1.90541 1.63024 1.33666 1.50688 1.21215 0.94606 0.94918 1.03590 1.20900 0.90127 1.05609 0.93814 1.21225 1.00604 0.91600 0.89725 1.58706 1.24973 1.42920 1.11247 1.23035 1.00459 0.93735 1.02695 1.22905 1.01672 0.95708 0.98967 1.65962 1.06828 1.29739 1.30094 0.90572 0.87754 0.87674 0.83165 0.75921 0.88529 0.88304 0.94139 0.91027 0.84893 0.84766 0.89013 0.88627 0.88817 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.96 13.65 55.55 0.76 -21.20 16 2 C 0.04 1.17 5.52 -17.35 -0.10 1.07 16 3 Si 1.16 27.70 25.60 -169.99 -4.35 23.35 16 4 H -0.33 -7.87 7.11 56.52 0.40 -7.47 16 5 H -0.28 -6.59 6.62 56.52 0.37 -6.21 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.48 -13.08 9.57 -37.73 -0.36 -13.44 16 8 H 0.08 2.27 8.05 -52.49 -0.42 1.84 16 9 C 0.27 7.22 6.40 -85.00 -0.54 6.68 16 10 C -0.28 -6.67 9.83 -38.66 -0.38 -7.05 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.32 -7.16 8.94 -38.89 -0.35 -7.51 16 13 C 0.38 8.76 7.53 -154.97 -1.17 7.59 16 14 N -0.66 -11.88 5.41 -11.40 -0.06 -11.94 16 15 C 0.51 8.08 7.59 -10.99 -0.08 8.00 16 16 O -0.50 -9.25 11.64 5.55 0.06 -9.18 16 17 C -0.10 -1.15 5.65 -27.89 -0.16 -1.30 16 18 C -0.10 -1.12 1.23 -154.51 -0.19 -1.31 16 19 C 0.10 1.06 6.60 -3.83 -0.03 1.03 16 20 N -0.85 -7.73 9.59 -10.37 -0.10 -7.83 16 21 C -0.16 -1.52 9.90 -26.73 -0.26 -1.79 16 22 C -0.15 -1.69 9.01 -26.73 -0.24 -1.93 16 23 N -0.60 -15.20 4.54 -10.25 -0.05 -15.25 16 24 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 25 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 26 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16 27 H 0.15 3.28 5.00 -53.79 -0.27 3.01 16 28 H 0.41 6.45 8.83 -40.82 -0.36 6.09 16 29 H 0.10 0.89 7.92 -51.93 -0.41 0.48 16 30 H 0.10 0.96 6.86 -51.93 -0.36 0.60 16 31 H 0.04 0.52 7.81 -51.93 -0.41 0.11 16 32 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.34 2.94 7.77 -39.29 -0.31 2.64 16 34 H 0.34 2.58 9.08 -39.29 -0.36 2.22 16 35 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -30.66 315.91 -8.25 -38.91 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.02 Total: 9.55 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -4.26 Total: -11.16 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.55 Total: -56.23 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.18 kcal Atomic # 14 Polarization: 27.70 SS G_CDS: -4.35 Total: 23.35 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.66 -8.25 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.726 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds