Wall clock time and date at job start Mon Mar 30 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86796 * 119.99866 * 2 1 4 4 H 1.48499 * 109.47114 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47124 * 120.00241 * 3 2 1 6 6 H 1.48504 * 109.47228 * 240.00075 * 3 2 1 7 7 C 1.40025 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00197 * 4.43008 * 7 2 1 9 9 C 1.41339 * 120.00322 * 184.43359 * 7 2 1 10 10 C 1.40612 * 119.79013 * 185.40281 * 9 7 2 11 11 C 1.38304 * 119.12712 * 179.97438 * 10 9 7 12 12 C 1.38695 * 118.67331 * 0.02562 * 11 10 9 13 13 C 1.39636 * 119.49243 * 359.97438 * 12 11 10 14 14 N 1.39273 * 119.57191 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00333 * 341.35111 * 14 13 12 16 16 O 1.21283 * 119.99461 * 4.47414 * 15 14 13 17 17 C 1.50694 * 120.00572 * 184.46980 * 15 14 13 18 18 C 1.52999 * 109.47394 * 185.44087 * 17 15 14 19 19 C 1.52999 * 115.55104 * 277.52065 * 18 17 15 20 20 N 1.46897 * 109.46992 * 293.51499 * 19 18 17 21 21 C 1.53001 * 117.49687 * 131.81566 * 18 17 15 22 22 C 1.53001 * 117.49734 * 63.19288 * 18 17 15 23 23 N 1.31926 * 120.85119 * 359.71958 * 13 12 11 24 24 H 0.97011 * 120.00185 * 174.96472 * 1 2 3 25 25 H 1.07993 * 120.43941 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.66724 * 180.02562 * 11 10 9 27 27 H 1.07999 * 120.25619 * 179.97438 * 12 11 10 28 28 H 0.97001 * 119.99543 * 161.35309 * 14 13 12 29 29 H 1.09006 * 109.47095 * 305.44705 * 17 15 14 30 30 H 1.08997 * 109.46675 * 65.43969 * 17 15 14 31 31 H 1.09003 * 109.46967 * 53.51497 * 19 18 17 32 32 H 1.09002 * 109.46903 * 173.51138 * 19 18 17 33 33 H 1.00897 * 111.00434 * 62.66059 * 20 19 18 34 34 H 1.00901 * 110.99602 * 186.61387 * 20 19 18 35 35 H 1.08997 * 117.49934 * 359.97438 * 21 18 17 36 36 H 1.08994 * 117.49886 * 145.01965 * 21 18 17 37 37 H 1.08994 * 117.50128 * 214.97672 * 22 18 17 38 38 H 1.09005 * 117.49825 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 1.2763 2.7464 -0.0006 5 1 3.0951 1.6964 1.2124 6 1 3.0951 1.6964 -1.2125 7 6 2.0075 -1.2126 -0.0005 8 1 1.4700 -2.1466 -0.0732 9 6 3.4177 -1.2146 0.0941 10 6 4.1240 -2.4250 -0.0212 11 6 5.5037 -2.4109 0.0730 12 6 6.1444 -1.1982 0.2792 13 6 5.3869 -0.0299 0.3854 14 7 6.0286 1.1888 0.5920 15 6 7.2932 1.2143 1.0574 16 8 7.9007 0.1772 1.2193 17 6 7.9523 2.5314 1.3764 18 6 9.4156 2.2913 1.7533 19 6 9.6634 1.8728 3.2039 20 7 9.3142 2.9829 4.1002 21 6 10.4716 3.1712 1.0812 22 6 10.3335 1.7009 0.6810 23 7 4.0719 -0.0649 0.2866 24 1 -0.4851 -0.8369 -0.0737 25 1 3.5960 -3.3534 -0.1812 26 1 6.0710 -3.3259 -0.0124 27 1 7.2208 -1.1577 0.3571 28 1 5.5652 2.0193 0.4009 29 1 7.9039 3.1827 0.5037 30 1 7.4349 3.0037 2.2114 31 1 9.0472 1.0058 3.4421 32 1 10.7151 1.6177 3.3338 33 1 8.3335 3.2096 4.0301 34 1 9.5693 2.7719 5.0534 35 1 10.1239 3.9207 0.3703 36 1 11.3431 3.4521 1.6725 37 1 11.1141 1.0146 1.0090 38 1 9.8950 1.4838 -0.2931 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332078467.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:42 Heat of formation + Delta-G solvation = -3.799804 kcal Electronic energy + Delta-G solvation = -21026.371752 eV Core-core repulsion = 17868.192868 eV Total energy + Delta-G solvation = -3158.178884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.78075 -40.19221 -38.69838 -36.20240 -35.36492 -34.24610 -32.99268 -31.94650 -30.04347 -27.25461 -26.16807 -24.17046 -23.57654 -23.17837 -21.61519 -20.44273 -19.92394 -18.62460 -18.02478 -17.28150 -16.95309 -16.52045 -16.39610 -15.96292 -15.62093 -15.39818 -15.12520 -14.73889 -14.56638 -14.53328 -14.21973 -13.74394 -13.50339 -13.17611 -12.92436 -12.70521 -12.28198 -12.23435 -11.98177 -11.71810 -11.66299 -11.20492 -11.11335 -10.86688 -10.50329 -10.35491 -9.71371 -9.56223 -9.35966 -9.17993 -6.84347 0.52237 0.72084 1.54491 1.58149 1.74705 1.84462 2.08041 2.45472 2.65940 2.91222 3.52702 3.58563 3.73897 3.79291 3.87298 4.07463 4.08826 4.28103 4.41986 4.56570 4.63477 4.65442 4.67904 4.81352 4.83068 4.90532 4.95696 5.14342 5.23293 5.33445 5.35537 5.38548 5.42722 5.73755 5.81053 5.92787 6.20889 6.32202 6.41230 6.58965 6.64944 7.10868 7.49140 7.93213 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024981 B = 0.004910 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.592197 B = 5701.679764 C = 6310.555569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.013 3.987 3 Si 1.188 2.812 4 H -0.329 1.329 5 H -0.274 1.274 6 H -0.292 1.292 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.258 3.742 10 C -0.296 4.296 11 C -0.030 4.030 12 C -0.316 4.316 13 C 0.375 3.625 14 N -0.655 5.655 15 C 0.513 3.487 16 O -0.529 6.529 17 C -0.094 4.094 18 C -0.116 4.116 19 C 0.103 3.897 20 N -0.845 5.845 21 C -0.139 4.139 22 C -0.168 4.168 23 N -0.612 5.612 24 H 0.280 0.720 25 H 0.112 0.888 26 H 0.141 0.859 27 H 0.162 0.838 28 H 0.417 0.583 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.015 0.985 32 H 0.074 0.926 33 H 0.342 0.658 34 H 0.349 0.651 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.266 8.526 3.679 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.203 4.203 3 Si 1.020 2.980 4 H -0.262 1.262 5 H -0.201 1.201 6 H -0.220 1.220 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.133 3.867 10 C -0.318 4.318 11 C -0.054 4.054 12 C -0.340 4.340 13 C 0.144 3.856 14 N -0.301 5.301 15 C 0.303 3.697 16 O -0.405 6.405 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.027 4.027 20 N -0.376 5.376 21 C -0.176 4.176 22 C -0.206 4.206 23 N -0.339 5.339 24 H 0.091 0.909 25 H 0.130 0.870 26 H 0.159 0.841 27 H 0.179 0.821 28 H 0.254 0.746 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 18.490 10.495 3.528 21.551 hybrid contribution -1.160 -3.639 0.149 3.822 sum 17.329 6.856 3.677 18.996 Atomic orbital electron populations 1.70671 1.08492 1.32662 1.33460 1.28638 0.95588 1.08094 0.87961 0.81440 0.70084 0.67558 0.78945 1.26225 1.20122 1.22021 1.20731 0.91291 0.96012 1.46333 0.91559 1.18435 0.93378 0.87333 0.87551 1.21764 0.95110 0.98041 1.16900 1.21382 0.93489 0.98092 0.92421 1.22326 1.02473 0.91557 1.17648 1.18570 0.88073 0.86555 0.92428 1.43507 1.15123 1.07361 1.64134 1.21601 0.79646 0.93338 0.75146 1.90505 1.63309 1.35246 1.51444 1.21292 0.94293 0.92287 1.05480 1.20970 0.90211 1.06754 0.93734 1.21123 1.00298 0.91129 0.90200 1.58709 1.25245 1.41937 1.11696 1.23078 0.99652 0.92924 1.01954 1.22899 1.01953 0.97172 0.98538 1.65972 1.08087 1.29471 1.30338 0.90920 0.87003 0.84081 0.82069 0.74584 0.85777 0.86309 0.96724 0.90717 0.84509 0.83829 0.87500 0.87976 0.89018 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.37 13.65 21.84 0.30 -46.07 16 2 C 0.01 0.74 5.52 85.29 0.47 1.21 16 3 Si 1.19 55.85 25.60 68.60 1.76 57.61 16 4 H -0.33 -15.09 7.11 99.48 0.71 -14.38 16 5 H -0.27 -12.38 6.62 99.48 0.66 -11.72 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.51 -28.82 9.57 23.47 0.22 -28.59 16 8 H 0.07 3.81 8.05 -2.91 -0.02 3.79 16 9 C 0.26 13.71 6.40 40.21 0.26 13.96 16 10 C -0.30 -14.09 9.83 22.87 0.22 -13.87 16 11 C -0.03 -1.25 10.15 22.39 0.23 -1.02 16 12 C -0.32 -13.53 8.94 22.72 0.20 -13.33 16 13 C 0.38 16.45 7.53 133.23 1.00 17.45 16 14 N -0.66 -22.11 5.41 -308.38 -1.67 -23.78 16 15 C 0.51 14.83 7.59 87.66 0.66 15.50 16 16 O -0.53 -18.30 11.64 -3.04 -0.04 -18.34 16 17 C -0.09 -1.75 5.65 29.85 0.17 -1.58 16 18 C -0.12 -2.17 1.23 -52.18 -0.06 -2.23 16 19 C 0.10 1.99 6.60 86.30 0.57 2.56 16 20 N -0.85 -13.12 9.59 -186.72 -1.79 -14.91 16 21 C -0.14 -2.11 9.90 30.60 0.30 -1.81 16 22 C -0.17 -3.26 9.01 30.60 0.28 -2.99 16 23 N -0.61 -30.46 4.54 -186.36 -0.85 -31.31 16 24 H 0.28 15.20 8.72 -92.70 -0.81 14.39 16 25 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 26 H 0.14 4.85 8.06 -2.91 -0.02 4.83 16 27 H 0.16 6.64 5.00 -23.55 -0.12 6.53 16 28 H 0.42 12.07 8.83 -92.71 -0.82 11.25 16 29 H 0.12 1.70 7.92 -2.38 -0.02 1.68 16 30 H 0.12 1.81 6.86 -2.39 -0.02 1.79 16 31 H 0.01 0.35 7.81 -2.39 -0.02 0.33 16 32 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 33 H 0.34 4.93 7.77 -89.70 -0.70 4.24 16 34 H 0.35 4.47 9.08 -89.69 -0.81 3.66 16 35 H 0.11 1.33 8.07 -2.39 -0.02 1.31 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -66.07 315.91 0.84 -65.23 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -1.40 Total: 26.30 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.53 Total: -14.74 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.01 Total: -116.07 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 14 Polarization: 55.85 SS G_CDS: 1.76 Total: 57.61 kcal Total: -66.07 0.84 -65.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332078467.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.434 kcal (2) G-P(sol) polarization free energy of solvation -66.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds