Wall clock time and date at job start Mon Mar 30 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99799 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.47429 * 125.64418 * 0.03368 * 13 11 10 15 15 C 1.54915 * 104.83112 * 155.83021 * 14 13 11 16 16 C 1.55162 * 101.57670 * 37.00837 * 15 14 13 17 17 C 1.47017 * 125.64923 * 179.71798 * 13 11 10 18 18 H 1.08996 * 109.88329 * 300.51649 * 17 13 11 19 19 C 1.50700 * 109.88165 * 61.68521 * 17 13 11 20 20 N 1.31792 * 119.12449 * 44.72288 * 19 17 13 21 21 C 1.32333 * 120.81716 * 179.75987 * 20 19 17 22 22 C 1.38589 * 119.10738 * 0.51242 * 21 20 19 23 23 C 1.38596 * 118.39722 * 359.74625 * 22 21 20 24 24 N 1.31794 * 119.12302 * 225.00285 * 19 17 13 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.09003 * 110.36344 * 274.66347 * 14 13 11 31 31 H 1.08996 * 110.37131 * 36.99425 * 14 13 11 32 32 H 1.08991 * 111.00313 * 155.07851 * 15 14 13 33 33 H 1.08998 * 111.00357 * 278.93701 * 15 14 13 34 34 H 1.08996 * 110.72354 * 82.86757 * 16 15 14 35 35 H 1.09005 * 110.71728 * 205.95801 * 16 15 14 36 36 H 1.08007 * 120.44416 * 180.28304 * 21 20 19 37 37 H 1.08003 * 120.80364 * 179.77197 * 22 21 20 38 38 H 1.08003 * 120.45179 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4920 -4.9671 0.0170 12 8 0.2792 -4.9671 0.0171 13 7 2.1659 -6.1343 0.0216 14 6 3.6331 -6.2792 0.0217 15 6 3.8936 -7.6753 0.6407 16 6 2.7132 -8.4984 0.0603 17 6 1.5598 -7.4736 0.0341 18 1 0.9373 -7.5906 0.9212 19 6 0.7297 -7.6721 -1.2079 20 7 1.2198 -7.2998 -2.3733 21 6 0.5218 -7.4628 -3.4856 22 6 -0.7436 -8.0232 -3.4115 23 6 -1.2269 -8.3973 -2.1676 24 7 -0.4694 -8.2082 -1.0991 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 2.8721 -3.6081 -0.8798 29 1 2.8721 -3.6002 0.9002 30 1 4.0183 -6.2381 -0.9971 31 1 4.0911 -5.5018 0.6331 32 1 4.8507 -8.0773 0.3088 33 1 3.8444 -7.6355 1.7288 34 1 2.9453 -8.8492 -0.9452 35 1 2.4700 -9.3368 0.7131 36 1 0.9312 -7.1597 -4.4380 37 1 -1.3385 -8.1655 -4.3016 38 1 -2.2087 -8.8368 -2.0714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332688123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:27 Heat of formation + Delta-G solvation = 9.898894 kcal Electronic energy + Delta-G solvation = -21092.358277 eV Core-core repulsion = 17934.773413 eV Total energy + Delta-G solvation = -3157.584864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15954 -39.45574 -37.13746 -33.65911 -33.46127 -32.60424 -31.61410 -30.61895 -28.83271 -25.78552 -24.57732 -24.30861 -22.80985 -21.60081 -20.63824 -18.75148 -17.65723 -17.17052 -16.62232 -16.07912 -15.73269 -15.29507 -14.77660 -14.68956 -14.42005 -14.03542 -13.60403 -13.36677 -13.33982 -12.91670 -12.33274 -12.12671 -11.94571 -11.74279 -11.36140 -11.05915 -10.97818 -10.88846 -10.80050 -10.74827 -10.58823 -9.90720 -9.63234 -9.58406 -9.20251 -9.13389 -8.95535 -8.41105 -8.28374 -5.93017 -3.97494 0.87992 1.12821 3.16268 3.30867 3.36376 3.40798 3.42867 3.80510 3.89543 4.23610 4.47011 4.51025 4.57422 4.60754 4.85495 4.97225 5.07889 5.21084 5.30668 5.41659 5.43441 5.54514 5.63408 5.68544 5.72458 5.76742 5.93028 6.11195 6.26971 6.30131 6.36241 6.56783 6.93801 7.02172 7.77135 7.89626 7.89847 8.10451 8.14982 8.41748 8.80292 9.10809 9.65742 11.18031 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020640 B = 0.004586 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.230718 B = 6103.550010 C = 6933.015007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.122 4.122 11 C 0.528 3.472 12 O -0.530 6.530 13 N -0.614 5.614 14 C 0.104 3.896 15 C -0.130 4.130 16 C -0.117 4.117 17 C 0.203 3.797 18 H 0.099 0.901 19 C 0.324 3.676 20 N -0.502 5.502 21 C 0.148 3.852 22 C -0.236 4.236 23 C 0.148 3.852 24 N -0.510 5.510 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.166 0.834 37 H 0.145 0.855 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -20.787 -4.174 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.161 4.161 11 C 0.319 3.681 12 O -0.405 6.405 13 N -0.351 5.351 14 C -0.019 4.019 15 C -0.168 4.168 16 C -0.156 4.156 17 C 0.097 3.903 18 H 0.117 0.883 19 C 0.055 3.945 20 N -0.216 5.216 21 C -0.019 4.019 22 C -0.258 4.258 23 C -0.018 4.018 24 N -0.223 5.223 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.183 0.817 37 H 0.163 0.837 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.386 -20.404 -3.348 21.367 hybrid contribution -0.274 0.848 -1.036 1.367 sum 5.113 -19.556 -4.384 20.683 Atomic orbital electron populations 1.69992 1.06086 1.26655 1.50202 1.25022 0.94808 0.99202 0.95316 0.86649 0.79540 0.83165 0.78553 1.20244 1.21297 1.20217 1.21176 0.92884 0.90964 1.51394 0.92626 1.18894 0.93168 0.89396 0.98471 1.21839 1.00604 0.91333 1.02362 1.21367 0.88166 0.84411 0.74122 1.90686 1.14327 1.86828 1.48663 1.48696 1.06925 1.04020 1.75502 1.22281 0.80890 0.97455 1.01237 1.22790 0.98254 0.94760 1.01005 1.22624 0.93646 0.96892 1.02453 1.20133 0.93400 0.84649 0.92123 0.88333 1.23363 0.88790 0.88898 0.93440 1.68154 1.37818 1.16686 0.98922 1.23229 0.90791 0.90605 0.97233 1.22874 0.98915 1.03421 1.00559 1.23184 0.98699 0.92121 0.87799 1.68171 1.05716 1.14854 1.33591 0.92925 0.95872 0.96075 0.90263 0.90264 0.91082 0.90011 0.89648 0.90272 0.90376 0.89702 0.81666 0.83677 0.81638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.07 13.29 55.43 0.74 -27.34 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.30 9.11 -34.44 -0.31 -15.62 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.08 4.26 -27.88 -0.12 0.96 16 10 C -0.12 -2.65 4.64 -27.88 -0.13 -2.78 16 11 C 0.53 11.28 7.64 -10.98 -0.08 11.20 16 12 O -0.53 -13.66 15.81 5.55 0.09 -13.57 16 13 N -0.61 -10.09 2.88 -164.33 -0.47 -10.57 16 14 C 0.10 1.25 6.69 -2.52 -0.02 1.23 16 15 C -0.13 -1.14 7.08 -24.58 -0.17 -1.31 16 16 C -0.12 -1.19 6.46 -24.90 -0.16 -1.35 16 17 C 0.20 3.01 3.26 -68.11 -0.22 2.79 16 18 H 0.10 1.54 8.13 -51.93 -0.42 1.12 16 19 C 0.32 5.24 5.68 -157.20 -0.89 4.34 16 20 N -0.50 -7.88 10.11 -10.73 -0.11 -7.99 16 21 C 0.15 1.86 11.30 -17.21 -0.19 1.67 16 22 C -0.24 -2.57 10.17 -39.32 -0.40 -2.97 16 23 C 0.15 1.84 11.30 -17.20 -0.19 1.64 16 24 N -0.51 -8.04 10.32 -10.73 -0.11 -8.15 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 29 H 0.08 1.56 7.85 -51.93 -0.41 1.15 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.92 7.48 -51.93 -0.39 0.53 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.80 7.84 -51.93 -0.41 0.40 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -37.82 324.76 -8.38 -46.20 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.39 Total: -1.90 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -3.00 Total: 1.42 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.04 Total: -54.04 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.82 -8.38 -46.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332688123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.099 kcal (2) G-P(sol) polarization free energy of solvation -37.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds