Wall clock time and date at job start Mon Mar 30 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99799 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00078 * 179.97438 * 11 10 9 14 14 C 1.47429 * 125.64418 * 0.03368 * 13 11 10 15 15 C 1.54915 * 104.83112 * 155.83021 * 14 13 11 16 16 C 1.55162 * 101.57670 * 37.00837 * 15 14 13 17 17 C 1.47017 * 125.64923 * 179.71798 * 13 11 10 18 18 H 1.08996 * 109.88329 * 300.51649 * 17 13 11 19 19 C 1.50700 * 109.88165 * 61.68521 * 17 13 11 20 20 N 1.31792 * 119.12449 * 44.72288 * 19 17 13 21 21 C 1.32333 * 120.81716 * 179.75987 * 20 19 17 22 22 C 1.38589 * 119.10738 * 0.51242 * 21 20 19 23 23 C 1.38596 * 118.39722 * 359.74625 * 22 21 20 24 24 N 1.31794 * 119.12302 * 225.00285 * 19 17 13 25 25 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 29 29 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 30 30 H 1.09003 * 110.36344 * 274.66347 * 14 13 11 31 31 H 1.08996 * 110.37131 * 36.99425 * 14 13 11 32 32 H 1.08991 * 111.00313 * 155.07851 * 15 14 13 33 33 H 1.08998 * 111.00357 * 278.93701 * 15 14 13 34 34 H 1.08996 * 110.72354 * 82.86757 * 16 15 14 35 35 H 1.09005 * 110.71728 * 205.95801 * 16 15 14 36 36 H 1.08007 * 120.44416 * 180.28304 * 21 20 19 37 37 H 1.08003 * 120.80364 * 179.77197 * 22 21 20 38 38 H 1.08003 * 120.45179 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4920 -4.9671 0.0170 12 8 0.2792 -4.9671 0.0171 13 7 2.1659 -6.1343 0.0216 14 6 3.6331 -6.2792 0.0217 15 6 3.8936 -7.6753 0.6407 16 6 2.7132 -8.4984 0.0603 17 6 1.5598 -7.4736 0.0341 18 1 0.9373 -7.5906 0.9212 19 6 0.7297 -7.6721 -1.2079 20 7 1.2198 -7.2998 -2.3733 21 6 0.5218 -7.4628 -3.4856 22 6 -0.7436 -8.0232 -3.4115 23 6 -1.2269 -8.3973 -2.1676 24 7 -0.4694 -8.2082 -1.0991 25 1 -0.4850 0.8400 0.0004 26 1 0.6245 -2.5529 0.8956 27 1 0.6244 -2.5609 -0.8844 28 1 2.8721 -3.6081 -0.8798 29 1 2.8721 -3.6002 0.9002 30 1 4.0183 -6.2381 -0.9971 31 1 4.0911 -5.5018 0.6331 32 1 4.8507 -8.0773 0.3088 33 1 3.8444 -7.6355 1.7288 34 1 2.9453 -8.8492 -0.9452 35 1 2.4700 -9.3368 0.7131 36 1 0.9312 -7.1597 -4.4380 37 1 -1.3385 -8.1655 -4.3016 38 1 -2.2087 -8.8368 -2.0714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332688123.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:27 Heat of formation + Delta-G solvation = -16.937802 kcal Electronic energy + Delta-G solvation = -21093.522003 eV Core-core repulsion = 17934.773413 eV Total energy + Delta-G solvation = -3158.748590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.21482 -40.81938 -38.51532 -35.62065 -34.69701 -33.78640 -33.05750 -32.29211 -29.86292 -27.77905 -25.57930 -25.44268 -24.30406 -22.97205 -21.87227 -20.15942 -18.92670 -18.69150 -18.04328 -17.45032 -17.08344 -16.52622 -16.37978 -16.16138 -15.80186 -15.46100 -14.58980 -14.45167 -14.43595 -14.28761 -14.13087 -13.82132 -13.36195 -13.06494 -12.78917 -12.71770 -12.53455 -12.14871 -11.97702 -11.88872 -11.82336 -11.66061 -11.61700 -11.35801 -10.85719 -10.58734 -10.45910 -10.25436 -9.72639 -8.19970 -6.35183 -0.11274 0.14589 1.40721 1.46175 1.53874 1.62335 1.94473 2.41971 2.75406 2.89428 3.12684 3.26799 3.54007 3.72458 3.72644 3.95049 4.04329 4.17645 4.18890 4.28406 4.42752 4.44965 4.47507 4.59792 4.77637 4.81776 4.88452 4.96041 4.98550 5.11129 5.33425 5.35848 5.43021 5.46646 5.56148 5.80404 6.04069 6.13746 6.47824 6.82433 7.09746 7.21146 7.35474 8.92941 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020640 B = 0.004586 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.230718 B = 6103.550010 C = 6933.015007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.007 4.007 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.047 3.953 10 C -0.108 4.108 11 C 0.524 3.476 12 O -0.591 6.591 13 N -0.605 5.605 14 C 0.091 3.909 15 C -0.114 4.114 16 C -0.105 4.105 17 C 0.193 3.807 18 H 0.079 0.921 19 C 0.299 3.701 20 N -0.528 5.528 21 C 0.128 3.872 22 C -0.221 4.221 23 C 0.131 3.869 24 N -0.542 5.542 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.026 1.026 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.196 0.804 37 H 0.188 0.812 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.418 -21.520 -4.892 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.096 0.904 9 C 0.010 3.990 10 C -0.147 4.147 11 C 0.315 3.685 12 O -0.471 6.471 13 N -0.339 5.339 14 C -0.030 4.030 15 C -0.152 4.152 16 C -0.144 4.144 17 C 0.087 3.913 18 H 0.097 0.903 19 C 0.031 3.969 20 N -0.242 5.242 21 C -0.037 4.037 22 C -0.243 4.243 23 C -0.034 4.034 24 N -0.257 5.257 25 H 0.072 0.928 26 H -0.002 1.002 27 H -0.007 1.007 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.212 0.788 37 H 0.205 0.795 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.149 -21.199 -4.074 23.074 hybrid contribution -1.191 0.986 -0.880 1.779 sum 6.958 -20.213 -4.954 21.944 Atomic orbital electron populations 1.70188 1.08484 1.27954 1.51350 1.26184 0.95718 1.04110 0.94410 0.85321 0.78022 0.76971 0.79611 1.18572 1.21249 1.18451 1.21650 0.94005 0.91376 1.51105 0.90440 1.18648 0.93543 0.92615 0.94228 1.21572 0.99155 0.89607 1.04383 1.21149 0.87374 0.85777 0.74174 1.90652 1.16697 1.87849 1.51881 1.48583 1.09041 1.03444 1.72829 1.22693 0.77816 1.00128 1.02397 1.22813 0.99004 0.92014 1.01376 1.22628 0.92217 0.96293 1.03233 1.20404 0.94927 0.84671 0.91331 0.90254 1.23481 0.89372 0.90063 0.94018 1.68122 1.38978 1.17509 0.99579 1.23889 0.91685 0.90564 0.97566 1.23311 0.98374 1.01116 1.01470 1.23873 0.99677 0.92024 0.87850 1.68162 1.06129 1.16009 1.35375 0.92815 1.00162 1.00712 0.88431 0.87676 0.90370 0.88920 0.86261 0.89259 0.90275 0.87566 0.78768 0.79514 0.78508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.33 13.29 21.45 0.28 -61.05 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.98 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 8 H 0.08 4.13 7.74 -2.91 -0.02 4.10 16 9 C 0.05 2.80 4.26 29.85 0.13 2.92 16 10 C -0.11 -4.76 4.64 29.85 0.14 -4.63 16 11 C 0.52 23.26 7.64 87.66 0.67 23.93 16 12 O -0.59 -32.56 15.81 -3.04 -0.05 -32.61 16 13 N -0.61 -19.93 2.88 -792.20 -2.28 -22.21 16 14 C 0.09 1.98 6.69 86.86 0.58 2.56 16 15 C -0.11 -1.63 7.08 31.99 0.23 -1.40 16 16 C -0.11 -1.94 6.46 31.78 0.21 -1.73 16 17 C 0.19 5.77 3.26 44.59 0.15 5.92 16 18 H 0.08 2.62 8.13 -2.39 -0.02 2.60 16 19 C 0.30 9.89 5.68 138.75 0.79 10.68 16 20 N -0.53 -16.58 10.11 -187.85 -1.90 -18.48 16 21 C 0.13 3.12 11.30 84.70 0.96 4.08 16 22 C -0.22 -4.48 10.17 22.44 0.23 -4.25 16 23 C 0.13 3.17 11.30 84.70 0.96 4.13 16 24 N -0.54 -17.55 10.32 -187.85 -1.94 -19.49 16 25 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 26 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 27 H -0.03 -1.72 8.10 -2.38 -0.02 -1.74 16 28 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 29 H 0.11 4.06 7.85 -2.38 -0.02 4.04 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.83 7.48 -2.39 -0.02 1.81 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.48 7.84 -2.39 -0.02 1.46 16 35 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.20 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -88.94 324.76 2.91 -86.03 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 1.05 Total: 10.23 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 5.72 Total: 10.47 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -5.83 Total: -121.23 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.61 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -88.94 2.91 -86.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332688123.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.091 kcal (2) G-P(sol) polarization free energy of solvation -88.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds