Wall clock time and date at job start Mon Mar 30 2020 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.65033 * 359.69329 * 13 11 10 15 15 C 1.54689 * 104.94220 * 204.07059 * 14 13 11 16 16 C 1.55160 * 101.67659 * 323.28114 * 15 14 13 17 17 C 1.47024 * 125.64599 * 179.97438 * 13 11 10 18 18 H 1.08997 * 109.87818 * 59.48930 * 17 13 11 19 19 C 1.50693 * 109.88284 * 298.32576 * 17 13 11 20 20 N 1.31801 * 119.12436 * 314.72488 * 19 17 13 21 21 C 1.32336 * 120.81953 * 179.76193 * 20 19 17 22 22 C 1.38600 * 119.10073 * 0.50726 * 21 20 19 23 23 C 1.38600 * 118.40211 * 359.74988 * 22 21 20 24 24 N 1.31795 * 119.12206 * 135.00298 * 19 17 13 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 1.08995 * 110.36405 * 323.00543 * 14 13 11 31 31 H 1.09000 * 110.36443 * 85.32458 * 14 13 11 32 32 H 1.08995 * 111.10279 * 205.10627 * 15 14 13 33 33 H 1.08998 * 110.84714 * 81.33637 * 15 14 13 34 34 H 1.09000 * 110.71649 * 276.96679 * 16 15 14 35 35 H 1.09002 * 110.87288 * 153.77224 * 16 15 14 36 36 H 1.07997 * 120.44571 * 180.27980 * 21 20 19 37 37 H 1.08000 * 120.79739 * 179.72756 * 22 21 20 38 38 H 1.07994 * 120.44239 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1659 -6.1343 0.0008 14 6 3.6330 -6.2794 -0.0067 15 6 3.8924 -7.6783 -0.6139 16 6 2.7131 -8.4987 -0.0276 17 6 1.5597 -7.4738 0.0018 18 1 0.9318 -7.5971 -0.8805 19 6 0.7372 -7.6631 1.2502 20 7 1.2388 -7.2924 2.4113 21 6 0.5440 -7.4389 3.5279 22 6 -0.7219 -8.0000 3.4655 23 6 -1.2132 -8.3822 2.2271 24 7 -0.4624 -8.2001 1.1527 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 4.0874 -5.5062 -0.6262 31 1 4.0241 -6.2310 1.0096 32 1 4.8502 -8.0788 -0.2818 33 1 3.8417 -7.6443 -1.7021 34 1 2.9469 -8.8447 0.9792 35 1 2.4654 -9.3399 -0.6751 36 1 0.9591 -7.1289 4.4755 37 1 -1.3110 -8.1364 4.3603 38 1 -2.1955 -8.8224 2.1403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332688124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:31 Heat of formation + Delta-G solvation = 5.293494 kcal Electronic energy + Delta-G solvation = -21132.813315 eV Core-core repulsion = 17975.028746 eV Total energy + Delta-G solvation = -3157.784569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21654 -39.54290 -37.23681 -33.77973 -33.71211 -32.67833 -31.68194 -30.51129 -28.87748 -25.40542 -24.62533 -24.29439 -22.83156 -21.74404 -20.82823 -18.89129 -17.71461 -17.25298 -16.77776 -16.14025 -16.00623 -15.40518 -14.85121 -14.79030 -14.25767 -13.67634 -13.65885 -13.45389 -13.40322 -13.06347 -12.63281 -12.12139 -11.91011 -11.81532 -11.49195 -11.32615 -11.02184 -10.87054 -10.80991 -10.78081 -10.11180 -10.07096 -9.88007 -9.67154 -9.25851 -9.19243 -8.50444 -8.48827 -8.25731 -6.29300 -3.99047 0.82594 1.07442 3.07699 3.21390 3.46716 3.49486 3.68230 3.74668 3.83355 4.18171 4.42796 4.52436 4.55310 4.60304 4.80176 4.92422 5.02833 5.15582 5.25622 5.36044 5.47547 5.48559 5.57794 5.63334 5.67187 5.71693 5.86962 6.05828 6.14068 6.17881 6.30598 6.48226 6.78277 6.96691 7.54973 7.60434 7.80277 8.09205 8.22752 8.52462 8.68854 8.94730 9.74734 11.11515 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.004606 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.994943 B = 6076.968257 C = 6902.027620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.607 4.607 8 H 0.049 0.951 9 C 0.025 3.975 10 C -0.114 4.114 11 C 0.528 3.472 12 O -0.534 6.534 13 N -0.613 5.613 14 C 0.104 3.896 15 C -0.130 4.130 16 C -0.117 4.117 17 C 0.203 3.797 18 H 0.099 0.901 19 C 0.323 3.677 20 N -0.503 5.503 21 C 0.148 3.852 22 C -0.235 4.235 23 C 0.148 3.852 24 N -0.510 5.510 25 H 0.271 0.729 26 H 0.012 0.988 27 H 0.014 0.986 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.215 -21.080 4.306 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.899 3.101 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.645 4.645 8 H 0.068 0.932 9 C -0.012 4.012 10 C -0.154 4.154 11 C 0.319 3.681 12 O -0.409 6.409 13 N -0.350 5.350 14 C -0.019 4.019 15 C -0.168 4.168 16 C -0.156 4.156 17 C 0.097 3.903 18 H 0.117 0.883 19 C 0.055 3.945 20 N -0.217 5.217 21 C -0.018 4.018 22 C -0.257 4.257 23 C -0.018 4.018 24 N -0.223 5.223 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.842 -19.192 3.477 20.360 hybrid contribution -0.465 -1.820 1.045 2.149 sum 5.377 -21.011 4.522 22.155 Atomic orbital electron populations 1.70732 1.06928 1.30942 1.46109 1.25855 0.96565 1.02676 0.93839 0.83535 0.74840 0.75339 0.76419 1.20780 1.21442 1.21477 1.22019 0.94145 0.91946 1.56394 0.93246 1.19014 0.93830 0.91210 0.97165 1.21693 1.00298 0.90843 1.02599 1.21343 0.88129 0.84480 0.74122 1.90675 1.14354 1.86905 1.48919 1.48663 1.06999 1.04041 1.75294 1.22249 0.80783 0.97520 1.01356 1.22746 0.98319 0.94645 1.01050 1.22629 0.93585 0.96883 1.02495 1.20139 0.93565 0.84583 0.92049 0.88324 1.23341 0.88710 0.88969 0.93503 1.68159 1.37818 1.16781 0.98903 1.23239 0.90824 0.90648 0.97135 1.22886 0.98892 1.03317 1.00635 1.23195 0.98710 0.92131 0.87748 1.68172 1.05950 1.14864 1.33343 0.91801 0.96980 0.96783 0.90082 0.90101 0.90001 0.91043 0.89535 0.90272 0.90356 0.89609 0.81628 0.83622 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.47 13.65 55.43 0.76 -28.72 16 2 C 0.01 0.45 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.89 29.90 -169.99 -5.08 20.81 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.61 -17.92 9.11 -34.44 -0.31 -18.24 16 8 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 9 C 0.03 0.71 3.57 -27.88 -0.10 0.61 16 10 C -0.11 -2.52 4.65 -27.88 -0.13 -2.65 16 11 C 0.53 11.26 7.64 -10.98 -0.08 11.18 16 12 O -0.53 -13.62 15.82 5.56 0.09 -13.53 16 13 N -0.61 -10.06 2.89 -164.47 -0.47 -10.54 16 14 C 0.10 1.24 6.68 -2.65 -0.02 1.22 16 15 C -0.13 -1.13 7.07 -24.70 -0.17 -1.30 16 16 C -0.12 -1.18 6.47 -24.90 -0.16 -1.34 16 17 C 0.20 2.99 3.25 -68.11 -0.22 2.77 16 18 H 0.10 1.54 8.13 -51.93 -0.42 1.11 16 19 C 0.32 5.20 5.69 -157.19 -0.89 4.31 16 20 N -0.50 -7.84 10.11 -10.73 -0.11 -7.95 16 21 C 0.15 1.85 11.31 -17.20 -0.19 1.66 16 22 C -0.24 -2.54 10.17 -39.31 -0.40 -2.94 16 23 C 0.15 1.82 11.31 -17.20 -0.19 1.62 16 24 N -0.51 -7.98 10.32 -10.73 -0.11 -8.09 16 25 H 0.27 8.97 7.22 -40.82 -0.29 8.67 16 26 H 0.01 0.36 7.97 -51.93 -0.41 -0.05 16 27 H 0.01 0.42 7.97 -51.93 -0.41 0.01 16 28 H 0.08 1.63 7.84 -51.93 -0.41 1.22 16 29 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.08 0.92 7.47 -51.93 -0.39 0.53 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.80 7.83 -51.93 -0.41 0.40 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -38.44 323.44 -8.37 -46.81 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.33 Total: -0.92 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.98 Total: -2.74 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.06 Total: -55.29 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -38.44 -8.37 -46.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332688124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.104 kcal (2) G-P(sol) polarization free energy of solvation -38.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds