Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47126 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.47427 * 125.65033 * 359.69329 * 13 11 10 15 15 C 1.54689 * 104.94220 * 204.07059 * 14 13 11 16 16 C 1.55160 * 101.67659 * 323.28114 * 15 14 13 17 17 C 1.47024 * 125.64599 * 179.97438 * 13 11 10 18 18 H 1.08997 * 109.87818 * 59.48930 * 17 13 11 19 19 C 1.50693 * 109.88284 * 298.32576 * 17 13 11 20 20 N 1.31801 * 119.12436 * 314.72488 * 19 17 13 21 21 C 1.32336 * 120.81953 * 179.76193 * 20 19 17 22 22 C 1.38600 * 119.10073 * 0.50726 * 21 20 19 23 23 C 1.38600 * 118.40211 * 359.74988 * 22 21 20 24 24 N 1.31795 * 119.12206 * 135.00298 * 19 17 13 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 1.08995 * 110.36405 * 323.00543 * 14 13 11 31 31 H 1.09000 * 110.36443 * 85.32458 * 14 13 11 32 32 H 1.08995 * 111.10279 * 205.10627 * 15 14 13 33 33 H 1.08998 * 110.84714 * 81.33637 * 15 14 13 34 34 H 1.09000 * 110.71649 * 276.96679 * 16 15 14 35 35 H 1.09002 * 110.87288 * 153.77224 * 16 15 14 36 36 H 1.07997 * 120.44571 * 180.27980 * 21 20 19 37 37 H 1.08000 * 120.79739 * 179.72756 * 22 21 20 38 38 H 1.07994 * 120.44239 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2791 -4.9672 0.0011 13 7 2.1659 -6.1343 0.0008 14 6 3.6330 -6.2794 -0.0067 15 6 3.8924 -7.6783 -0.6139 16 6 2.7131 -8.4987 -0.0276 17 6 1.5597 -7.4738 0.0018 18 1 0.9318 -7.5971 -0.8805 19 6 0.7372 -7.6631 1.2502 20 7 1.2388 -7.2924 2.4113 21 6 0.5440 -7.4389 3.5279 22 6 -0.7219 -8.0000 3.4655 23 6 -1.2132 -8.3822 2.2271 24 7 -0.4624 -8.2001 1.1527 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 4.0874 -5.5062 -0.6262 31 1 4.0241 -6.2310 1.0096 32 1 4.8502 -8.0788 -0.2818 33 1 3.8417 -7.6443 -1.7021 34 1 2.9469 -8.8447 0.9792 35 1 2.4654 -9.3399 -0.6751 36 1 0.9591 -7.1289 4.4755 37 1 -1.3110 -8.1364 4.3603 38 1 -2.1955 -8.8224 2.1403 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332688124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = -22.020017 kcal Electronic energy + Delta-G solvation = -21133.997717 eV Core-core repulsion = 17975.028746 eV Total energy + Delta-G solvation = -3158.968972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.26737 -40.90972 -38.60887 -35.99950 -34.74131 -33.83449 -33.06040 -32.24006 -29.90503 -27.38369 -25.62011 -25.47429 -24.44006 -23.17740 -21.97665 -20.26765 -19.14920 -18.74670 -18.22244 -17.55466 -17.22583 -16.58873 -16.24847 -15.87251 -15.71626 -15.60881 -14.80499 -14.55252 -14.44386 -14.40135 -14.33350 -13.79502 -13.56905 -13.20855 -12.76653 -12.68600 -12.31254 -12.10549 -12.02231 -11.93184 -11.88030 -11.85118 -11.68202 -11.06689 -10.75352 -10.58348 -10.50413 -10.29837 -9.80614 -8.73340 -6.45248 -0.15833 0.10138 1.51485 1.52996 1.63630 1.82089 1.86111 2.58236 2.70656 2.83996 3.13931 3.22059 3.47521 3.67654 3.68561 3.86842 3.97261 4.12927 4.14403 4.22824 4.25605 4.30811 4.41111 4.54695 4.71192 4.75684 4.83186 4.83987 4.91708 5.06464 5.19904 5.28502 5.29475 5.31879 5.39245 5.88805 5.99511 6.12021 6.39729 6.45927 7.04428 7.10680 7.41643 8.66136 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020629 B = 0.004606 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.994943 B = 6076.968257 C = 6902.027620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.045 4.045 3 Si 1.127 2.873 4 H -0.287 1.287 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.618 4.618 8 H 0.069 0.931 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.524 3.476 12 O -0.592 6.592 13 N -0.604 5.604 14 C 0.090 3.910 15 C -0.114 4.114 16 C -0.105 4.105 17 C 0.192 3.808 18 H 0.080 0.920 19 C 0.299 3.701 20 N -0.528 5.528 21 C 0.128 3.872 22 C -0.221 4.221 23 C 0.131 3.869 24 N -0.542 5.542 25 H 0.249 0.751 26 H -0.028 1.028 27 H -0.023 1.023 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.196 0.804 37 H 0.188 0.812 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.935 -21.995 5.030 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.241 4.241 3 Si 0.946 3.054 4 H -0.213 1.213 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.655 4.655 8 H 0.087 0.913 9 C -0.006 4.006 10 C -0.141 4.141 11 C 0.315 3.685 12 O -0.472 6.472 13 N -0.337 5.337 14 C -0.031 4.031 15 C -0.152 4.152 16 C -0.143 4.143 17 C 0.086 3.914 18 H 0.098 0.902 19 C 0.030 3.970 20 N -0.243 5.243 21 C -0.037 4.037 22 C -0.242 4.242 23 C -0.034 4.034 24 N -0.256 5.256 25 H 0.058 0.942 26 H -0.010 1.010 27 H -0.005 1.005 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.212 0.788 37 H 0.205 0.795 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.626 -20.188 4.209 22.353 hybrid contribution -1.370 -1.639 0.889 2.314 sum 7.255 -21.827 5.097 23.559 Atomic orbital electron populations 1.70902 1.08436 1.29523 1.48740 1.27759 0.96452 1.07555 0.92383 0.82858 0.73983 0.70086 0.78493 1.21258 1.18622 1.18758 1.22466 0.95221 0.92446 1.55382 0.91285 1.18826 0.94215 0.94032 0.93530 1.21444 0.98881 0.89342 1.04436 1.21076 0.87345 0.85778 0.74278 1.90643 1.16615 1.87883 1.52045 1.48560 1.09094 1.03473 1.72589 1.22660 0.77743 1.00207 1.02478 1.22771 0.99094 0.91859 1.01438 1.22638 0.92146 0.96284 1.03271 1.20416 0.95088 0.84554 0.91295 0.90205 1.23454 0.89303 0.90167 0.94072 1.68127 1.38958 1.17604 0.99568 1.23897 0.91748 0.90635 0.97441 1.23323 0.98315 1.00985 1.01574 1.23885 0.99701 0.92030 0.87765 1.68163 1.06343 1.15997 1.35137 0.94231 1.01010 1.00454 0.87696 0.88480 0.89001 0.90351 0.86141 0.89247 0.90267 0.87441 0.78756 0.79458 0.78440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.89 13.65 21.45 0.29 -62.59 16 2 C -0.05 -2.75 5.46 84.65 0.46 -2.29 16 3 Si 1.13 51.18 29.90 68.60 2.05 53.23 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.62 -36.79 9.11 25.60 0.23 -36.56 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.03 1.85 3.57 29.85 0.11 1.96 16 10 C -0.10 -4.52 4.65 29.85 0.14 -4.38 16 11 C 0.52 23.15 7.64 87.66 0.67 23.82 16 12 O -0.59 -32.22 15.82 -3.03 -0.05 -32.27 16 13 N -0.60 -19.79 2.89 -792.64 -2.29 -22.07 16 14 C 0.09 1.97 6.68 86.78 0.58 2.55 16 15 C -0.11 -1.61 7.07 31.91 0.23 -1.38 16 16 C -0.10 -1.91 6.47 31.78 0.21 -1.71 16 17 C 0.19 5.71 3.25 44.59 0.14 5.86 16 18 H 0.08 2.61 8.13 -2.39 -0.02 2.59 16 19 C 0.30 9.78 5.69 138.75 0.79 10.57 16 20 N -0.53 -16.44 10.11 -187.85 -1.90 -18.34 16 21 C 0.13 3.08 11.31 84.70 0.96 4.04 16 22 C -0.22 -4.39 10.17 22.44 0.23 -4.16 16 23 C 0.13 3.14 11.31 84.70 0.96 4.09 16 24 N -0.54 -17.35 10.32 -187.85 -1.94 -19.29 16 25 H 0.25 17.47 7.22 -92.71 -0.67 16.80 16 26 H -0.03 -1.88 7.97 -2.39 -0.02 -1.90 16 27 H -0.02 -1.50 7.97 -2.39 -0.02 -1.51 16 28 H 0.10 4.12 7.84 -2.39 -0.02 4.10 16 29 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 30 H 0.09 1.83 7.47 -2.39 -0.02 1.81 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.12 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.46 7.83 -2.39 -0.02 1.45 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -90.01 323.44 3.02 -87.00 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.15 Total: 11.91 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 5.70 Total: 2.42 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -5.83 Total: -122.30 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.05 Total: -32.27 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.05 Total: 53.23 kcal Total: -90.01 3.02 -87.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332688124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.977 kcal (2) G-P(sol) polarization free energy of solvation -90.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds