Wall clock time and date at job start Mon Mar 30 2020 02:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86795 * 119.99650 * 2 1 4 4 H 1.48497 * 109.47304 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47048 * 120.00467 * 3 2 1 6 6 H 1.48497 * 109.47173 * 239.99959 * 3 2 1 7 7 C 1.40026 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99388 * 179.97438 * 7 2 1 9 9 C 1.41338 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.40609 * 119.79001 * 179.97438 * 9 7 2 11 11 C 1.38300 * 119.13317 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.66384 * 0.02562 * 11 10 9 13 13 C 1.39632 * 119.49853 * 0.02562 * 12 11 10 14 14 N 1.39274 * 119.57291 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99632 * 174.67968 * 14 13 12 16 16 O 1.21272 * 120.00376 * 5.14681 * 15 14 13 17 17 C 1.50699 * 119.99847 * 185.15155 * 15 14 13 18 18 C 1.53002 * 109.47275 * 180.02562 * 17 15 14 19 19 H 1.08997 * 110.33529 * 54.29510 * 18 17 15 20 20 C 1.54908 * 110.37283 * 176.55265 * 18 17 15 21 21 C 1.55258 * 101.59748 * 155.81435 * 20 18 17 22 22 C 1.54320 * 103.08738 * 324.48758 * 21 20 18 23 23 N 1.47436 * 107.23017 * 22.20127 * 22 21 20 24 24 N 1.31927 * 120.85146 * 359.72005 * 13 12 11 25 25 H 0.96998 * 120.00232 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.43666 * 359.97438 * 10 9 7 27 27 H 1.07995 * 120.67177 * 180.02562 * 11 10 9 28 28 H 1.08007 * 120.25125 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00043 * 354.67869 * 14 13 12 30 30 H 1.09007 * 109.46879 * 299.99659 * 17 15 14 31 31 H 1.09002 * 109.47593 * 59.99333 * 17 15 14 32 32 H 1.09002 * 110.98838 * 273.98532 * 20 18 17 33 33 H 1.09002 * 110.99664 * 37.80465 * 20 18 17 34 34 H 1.09001 * 110.74344 * 206.04518 * 21 20 18 35 35 H 1.09007 * 110.75890 * 82.93137 * 21 20 18 36 36 H 1.08999 * 109.88575 * 262.79751 * 22 21 20 37 37 H 1.08995 * 110.02374 * 141.68863 * 22 21 20 38 38 H 1.00910 * 110.99821 * 123.25796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2763 2.7464 0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0951 1.6965 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0016 10 6 2.0085 -3.6518 -0.0027 11 6 1.3033 -4.8416 -0.0032 12 6 -0.0829 -4.7934 -0.0032 13 6 -0.7278 -3.5549 -0.0032 14 7 -2.1196 -3.5047 -0.0037 15 6 -2.7511 -2.3191 0.1045 16 8 -2.1109 -1.2891 0.1083 17 6 -4.2529 -2.2731 0.2209 18 6 -4.7118 -0.8176 0.3290 19 1 -4.3209 -0.2342 -0.5046 20 6 -6.2586 -0.7409 0.3627 21 6 -6.4883 0.6144 1.0845 22 6 -5.3335 0.6659 2.1069 23 7 -4.2744 -0.2343 1.6153 24 7 -0.0357 -2.4318 0.0023 25 1 -0.4850 0.8400 0.0004 26 1 3.0885 -3.6561 -0.0031 27 1 1.8215 -5.7891 -0.0037 28 1 -0.6591 -5.7069 -0.0040 29 1 -2.6344 -4.3231 -0.0820 30 1 -4.6999 -2.7299 -0.6622 31 1 -4.5654 -2.8201 1.1104 32 1 -6.6706 -0.7226 -0.6463 33 1 -6.6781 -1.5653 0.9393 34 1 -7.4530 0.6230 1.5918 35 1 -6.4172 1.4439 0.3807 36 1 -5.6856 0.3269 3.0812 37 1 -4.9492 1.6829 2.1850 38 1 -3.4005 0.2592 1.5099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333261349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:56 Heat of formation + Delta-G solvation = 18.831767 kcal Electronic energy + Delta-G solvation = -21376.659862 eV Core-core repulsion = 18219.462357 eV Total energy + Delta-G solvation = -3157.197505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.39219 -38.27232 -37.07012 -34.00980 -32.91884 -31.38620 -30.23303 -29.95404 -28.96324 -26.20551 -25.28885 -22.08192 -21.23058 -20.98178 -20.08814 -18.99709 -17.63274 -16.77260 -16.08313 -15.73986 -15.19235 -14.61582 -14.52074 -14.38561 -13.55163 -13.46867 -13.26916 -12.83670 -12.70217 -12.20428 -11.94688 -11.91873 -11.58962 -11.37970 -11.13529 -10.98500 -10.92549 -10.88419 -10.65835 -10.62008 -10.42659 -9.91418 -9.57997 -8.95337 -8.79758 -8.14121 -7.90758 -7.13219 -6.88537 -6.09470 -4.35504 2.84970 3.13375 3.17075 3.19859 3.30737 3.87700 3.98284 4.08683 4.39612 4.71193 4.83219 4.96933 5.07109 5.34750 5.40403 5.50769 5.70462 5.73299 5.80230 5.83605 5.95571 6.00094 6.10645 6.17308 6.19477 6.34864 6.54822 6.76808 6.88974 6.91358 7.19527 7.27811 7.61546 7.69439 7.74702 7.86439 8.13900 8.26846 8.55114 8.80035 9.10279 9.41430 10.30871 10.52082 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.006533 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.761286 B = 4284.909468 C = 5907.435726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.653 5.653 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.427 4.427 8 H 0.081 0.919 9 C 0.272 3.728 10 C -0.307 4.307 11 C -0.037 4.037 12 C -0.359 4.359 13 C 0.373 3.627 14 N -0.670 5.670 15 C 0.474 3.526 16 O -0.411 6.411 17 C -0.126 4.126 18 C 0.096 3.904 19 H 0.059 0.941 20 C -0.126 4.126 21 C -0.142 4.142 22 C 0.047 3.953 23 N -0.678 5.678 24 N -0.471 5.471 25 H 0.270 0.730 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 -0.321 0.530 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.170 4.170 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.458 4.458 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.134 3.866 14 N -0.317 5.317 15 C 0.256 3.744 16 O -0.275 6.275 17 C -0.167 4.167 18 C -0.014 4.014 19 H 0.077 0.923 20 C -0.164 4.164 21 C -0.181 4.181 22 C -0.082 4.082 23 N -0.310 5.310 24 N -0.190 5.190 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.687 0.949 0.969 12.759 hybrid contribution 0.663 0.039 -0.599 0.894 sum -12.024 0.988 0.370 12.071 Atomic orbital electron populations 1.70345 1.05629 1.27135 1.24066 1.26155 0.95136 1.00425 0.95293 0.86607 0.80225 0.81624 0.79615 1.20510 1.19222 1.19267 1.19519 0.93971 0.89410 1.42855 0.90136 1.18393 0.87309 0.91885 0.87790 1.21617 0.98490 0.93597 1.19314 1.20553 0.93232 0.96473 0.95870 1.20517 0.94792 0.95057 1.28062 1.18661 0.83576 0.90833 0.93493 1.43487 1.04958 1.09425 1.73819 1.20731 0.89390 0.84784 0.79509 1.91078 1.65577 1.30831 1.39986 1.21714 0.94135 0.97889 1.02949 1.22010 0.92986 0.94385 0.92027 0.92257 1.22771 0.95603 0.97541 1.00461 1.22793 0.99114 0.97683 0.98479 1.22555 0.91954 0.95336 0.98384 1.61655 1.05790 1.36151 1.27383 1.68722 1.06834 1.23202 1.20270 0.91823 0.88690 0.88749 0.89199 0.76994 0.90000 0.89218 0.91095 0.90776 0.91201 0.91720 0.91374 0.93541 0.82351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.86 8.99 55.55 0.50 -17.36 16 2 C 0.06 1.55 5.50 -17.34 -0.10 1.46 16 3 Si 0.89 19.35 29.56 -169.99 -5.02 14.33 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.43 -11.86 9.14 -37.73 -0.34 -12.21 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.27 7.73 6.55 -85.00 -0.56 7.18 16 10 C -0.31 -7.89 9.83 -38.66 -0.38 -8.27 16 11 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 12 C -0.36 -8.24 9.95 -38.89 -0.39 -8.63 16 13 C 0.37 9.25 7.43 -154.97 -1.15 8.10 16 14 N -0.67 -13.37 5.38 -11.40 -0.06 -13.43 16 15 C 0.47 9.44 7.69 -10.99 -0.08 9.36 16 16 O -0.41 -9.92 10.70 5.56 0.06 -9.86 16 17 C -0.13 -1.80 5.42 -27.88 -0.15 -1.95 16 18 C 0.10 1.37 2.77 -66.18 -0.18 1.19 16 19 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 20 C -0.13 -1.36 6.51 -24.53 -0.16 -1.52 16 21 C -0.14 -1.48 6.94 -24.84 -0.17 -1.66 16 22 C 0.05 0.59 7.59 -2.84 -0.02 0.57 16 23 N -0.68 -10.54 6.72 -103.85 -0.70 -11.24 16 24 N -0.47 -13.32 5.74 -10.26 -0.06 -13.38 16 25 H 0.27 6.90 8.29 -40.82 -0.34 6.56 16 26 H 0.09 2.27 8.06 -52.48 -0.42 1.84 16 27 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 29 H 0.40 6.15 8.70 -40.82 -0.36 5.79 16 30 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.36 6.43 8.06 -39.29 -0.32 6.12 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -31.93 313.94 -9.92 -41.85 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.28 Total: 12.01 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -4.09 Total: -7.65 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.32 Total: -55.41 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.06 Total: -9.86 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.93 -9.92 -41.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333261349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.677 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds