Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86795 * 119.99650 * 2 1 4 4 H 1.48497 * 109.47304 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47048 * 120.00467 * 3 2 1 6 6 H 1.48497 * 109.47173 * 239.99959 * 3 2 1 7 7 C 1.40026 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99388 * 179.97438 * 7 2 1 9 9 C 1.41338 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.40609 * 119.79001 * 179.97438 * 9 7 2 11 11 C 1.38300 * 119.13317 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.66384 * 0.02562 * 11 10 9 13 13 C 1.39632 * 119.49853 * 0.02562 * 12 11 10 14 14 N 1.39274 * 119.57291 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99632 * 174.67968 * 14 13 12 16 16 O 1.21272 * 120.00376 * 5.14681 * 15 14 13 17 17 C 1.50699 * 119.99847 * 185.15155 * 15 14 13 18 18 C 1.53002 * 109.47275 * 180.02562 * 17 15 14 19 19 H 1.08997 * 110.33529 * 54.29510 * 18 17 15 20 20 C 1.54908 * 110.37283 * 176.55265 * 18 17 15 21 21 C 1.55258 * 101.59748 * 155.81435 * 20 18 17 22 22 C 1.54320 * 103.08738 * 324.48758 * 21 20 18 23 23 N 1.47436 * 107.23017 * 22.20127 * 22 21 20 24 24 N 1.31927 * 120.85146 * 359.72005 * 13 12 11 25 25 H 0.96998 * 120.00232 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.43666 * 359.97438 * 10 9 7 27 27 H 1.07995 * 120.67177 * 180.02562 * 11 10 9 28 28 H 1.08007 * 120.25125 * 179.97438 * 12 11 10 29 29 H 0.96996 * 120.00043 * 354.67869 * 14 13 12 30 30 H 1.09007 * 109.46879 * 299.99659 * 17 15 14 31 31 H 1.09002 * 109.47593 * 59.99333 * 17 15 14 32 32 H 1.09002 * 110.98838 * 273.98532 * 20 18 17 33 33 H 1.09002 * 110.99664 * 37.80465 * 20 18 17 34 34 H 1.09001 * 110.74344 * 206.04518 * 21 20 18 35 35 H 1.09007 * 110.75890 * 82.93137 * 21 20 18 36 36 H 1.08999 * 109.88575 * 262.79751 * 22 21 20 37 37 H 1.08995 * 110.02374 * 141.68863 * 22 21 20 38 38 H 1.00910 * 110.99821 * 123.25796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2763 2.7464 0.0006 5 1 3.0952 1.6964 1.2125 6 1 3.0951 1.6965 -1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0016 10 6 2.0085 -3.6518 -0.0027 11 6 1.3033 -4.8416 -0.0032 12 6 -0.0829 -4.7934 -0.0032 13 6 -0.7278 -3.5549 -0.0032 14 7 -2.1196 -3.5047 -0.0037 15 6 -2.7511 -2.3191 0.1045 16 8 -2.1109 -1.2891 0.1083 17 6 -4.2529 -2.2731 0.2209 18 6 -4.7118 -0.8176 0.3290 19 1 -4.3209 -0.2342 -0.5046 20 6 -6.2586 -0.7409 0.3627 21 6 -6.4883 0.6144 1.0845 22 6 -5.3335 0.6659 2.1069 23 7 -4.2744 -0.2343 1.6153 24 7 -0.0357 -2.4318 0.0023 25 1 -0.4850 0.8400 0.0004 26 1 3.0885 -3.6561 -0.0031 27 1 1.8215 -5.7891 -0.0037 28 1 -0.6591 -5.7069 -0.0040 29 1 -2.6344 -4.3231 -0.0820 30 1 -4.6999 -2.7299 -0.6622 31 1 -4.5654 -2.8201 1.1104 32 1 -6.6706 -0.7226 -0.6463 33 1 -6.6781 -1.5653 0.9393 34 1 -7.4530 0.6230 1.5918 35 1 -6.4172 1.4439 0.3807 36 1 -5.6856 0.3269 3.0812 37 1 -4.9492 1.6829 2.1850 38 1 -3.4005 0.2592 1.5099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333261349.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -2.655798 kcal Electronic energy + Delta-G solvation = -21377.591633 eV Core-core repulsion = 18219.462357 eV Total energy + Delta-G solvation = -3158.129276 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95951 -39.69920 -38.59966 -35.83271 -34.75707 -32.63904 -32.13566 -30.93206 -30.76270 -27.70991 -26.91633 -23.81303 -23.05515 -21.95824 -21.38977 -20.50086 -19.47767 -17.94720 -17.84022 -17.21474 -16.53327 -16.26290 -16.13276 -15.86844 -15.45946 -14.84874 -14.64893 -14.44510 -14.01806 -13.71347 -13.65151 -13.15734 -12.88017 -12.73049 -12.60495 -12.55047 -12.43865 -12.30598 -12.00587 -11.92040 -11.77853 -11.54325 -11.41319 -10.80616 -10.45593 -9.85789 -9.29559 -9.01440 -8.74933 -8.02000 -6.39329 0.96889 1.28751 1.39104 1.49792 1.53544 2.26941 2.29581 2.47956 3.02756 3.33065 3.78231 3.80345 4.08891 4.15092 4.16820 4.28805 4.39856 4.48370 4.72070 4.74143 4.79032 4.83691 4.90169 4.97601 4.98761 5.02913 5.10153 5.12131 5.20637 5.33268 5.40044 5.71351 5.91812 5.95379 6.13652 6.19211 6.40493 6.43482 6.80683 6.92377 7.12568 7.85260 8.39650 8.59291 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.006533 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.761286 B = 4284.909468 C = 5907.435726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.682 5.682 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.468 4.468 8 H 0.083 0.917 9 C 0.237 3.763 10 C -0.334 4.334 11 C -0.036 4.036 12 C -0.350 4.350 13 C 0.350 3.650 14 N -0.660 5.660 15 C 0.460 3.540 16 O -0.456 6.456 17 C -0.109 4.109 18 C 0.091 3.909 19 H 0.032 0.968 20 C -0.115 4.115 21 C -0.136 4.136 22 C 0.042 3.958 23 N -0.694 5.694 24 N -0.504 5.504 25 H 0.269 0.731 26 H 0.102 0.898 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.419 0.581 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.244 -1.369 0.498 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.301 5.301 2 C -0.213 4.213 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.499 4.499 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.357 4.357 11 C -0.060 4.060 12 C -0.375 4.375 13 C 0.111 3.889 14 N -0.310 5.310 15 C 0.245 3.755 16 O -0.323 6.323 17 C -0.150 4.150 18 C -0.019 4.019 19 H 0.050 0.950 20 C -0.153 4.153 21 C -0.174 4.174 22 C -0.087 4.087 23 N -0.324 5.324 24 N -0.223 5.223 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.256 0.744 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.669 -0.157 0.937 14.699 hybrid contribution 1.209 0.198 -0.572 1.352 sum -13.459 0.041 0.365 13.464 Atomic orbital electron populations 1.70527 1.06995 1.27801 1.24797 1.26970 0.96084 1.03682 0.94593 0.85431 0.78728 0.76800 0.79715 1.19793 1.18719 1.18642 1.19839 0.94326 0.90565 1.45164 0.89937 1.18883 0.88181 0.93260 0.88575 1.21794 0.99088 0.93983 1.20827 1.21019 0.93665 0.97239 0.94064 1.20995 0.95161 0.95910 1.25480 1.19223 0.85613 0.90960 0.93124 1.43536 1.03340 1.10874 1.73217 1.21826 0.91682 0.83990 0.78021 1.91081 1.67141 1.32365 1.41679 1.21694 0.89516 0.98545 1.05204 1.22092 0.95523 0.93755 0.90575 0.94996 1.22753 0.92454 0.98152 1.01894 1.22782 0.99158 0.97586 0.97917 1.22665 0.92052 0.94748 0.99255 1.61728 1.05717 1.36777 1.28161 1.68696 1.07040 1.25274 1.21333 0.91998 0.88026 0.84769 0.85230 0.74430 0.86524 0.87562 0.89261 0.89359 0.88837 0.91691 0.90811 0.93821 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.13 8.99 21.84 0.20 -38.93 16 2 C 0.01 0.69 5.50 85.29 0.47 1.16 16 3 Si 0.97 41.24 29.56 68.60 2.03 43.27 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.47 -27.20 9.14 23.47 0.21 -26.98 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.24 13.99 6.55 40.21 0.26 14.25 16 10 C -0.33 -17.41 9.83 22.86 0.22 -17.19 16 11 C -0.04 -1.61 10.15 22.39 0.23 -1.38 16 12 C -0.35 -15.41 9.95 22.72 0.23 -15.18 16 13 C 0.35 17.31 7.43 133.23 0.99 18.30 16 14 N -0.66 -25.72 5.38 -308.39 -1.66 -27.38 16 15 C 0.46 18.31 7.69 87.66 0.67 18.98 16 16 O -0.46 -22.86 10.70 -3.01 -0.03 -22.90 16 17 C -0.11 -2.90 5.42 29.85 0.16 -2.74 16 18 C 0.09 2.51 2.77 45.39 0.13 2.63 16 19 H 0.03 1.05 7.96 -2.39 -0.02 1.03 16 20 C -0.11 -2.15 6.51 32.02 0.21 -1.94 16 21 C -0.14 -2.52 6.94 31.82 0.22 -2.30 16 22 C 0.04 1.01 7.59 86.65 0.66 1.67 16 23 N -0.69 -21.73 6.72 -482.47 -3.24 -24.97 16 24 N -0.50 -29.35 5.74 -186.36 -1.07 -30.42 16 25 H 0.27 14.51 8.29 -92.71 -0.77 13.74 16 26 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 27 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 28 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 29 H 0.42 11.93 8.70 -92.71 -0.81 11.13 16 30 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.34 12.82 8.06 -89.69 -0.72 12.10 16 Total: -1.00 -73.47 313.94 0.44 -73.03 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -0.45 Total: 39.02 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 4.66 Total: -10.72 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.77 Total: -121.70 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.03 Total: -22.90 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -73.47 0.44 -73.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333261349.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.379 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds