Wall clock time and date at job start Mon Mar 30 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47339 * 240.00435 * 3 2 1 5 5 H 1.48508 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47366 * 119.99795 * 3 2 1 7 7 C 1.40038 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.41335 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78929 * 180.02562 * 9 7 2 11 11 C 1.38312 * 119.13162 * 179.97438 * 10 9 7 12 12 C 1.38692 * 118.66706 * 359.74657 * 11 10 9 13 13 C 1.39634 * 119.49592 * 0.48069 * 12 11 10 14 14 N 1.39266 * 119.57546 * 179.79365 * 13 12 11 15 15 C 1.34776 * 120.00385 * 185.39397 * 14 13 12 16 16 O 1.21273 * 119.99847 * 354.85170 * 15 14 13 17 17 C 1.50696 * 120.00163 * 174.85945 * 15 14 13 18 18 C 1.53002 * 109.47066 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.87875 * 305.70114 * 18 17 15 20 20 C 1.54314 * 109.89206 * 184.66842 * 18 17 15 21 21 C 1.55396 * 102.90142 * 218.41101 * 20 18 17 22 22 C 1.54900 * 101.74372 * 35.47304 * 21 20 18 23 23 N 1.47448 * 109.89078 * 66.72837 * 18 17 15 24 24 N 1.31930 * 120.85303 * 359.50818 * 13 12 11 25 25 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.43571 * 0.02562 * 10 9 7 27 27 H 1.07994 * 120.66371 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.25529 * 180.26884 * 12 11 10 29 29 H 0.97004 * 119.99638 * 5.38316 * 14 13 12 30 30 H 1.09002 * 109.47161 * 299.99217 * 17 15 14 31 31 H 1.08992 * 109.47682 * 59.99638 * 17 15 14 32 32 H 1.09007 * 110.70512 * 336.69143 * 20 18 17 33 33 H 1.08996 * 110.70933 * 99.92185 * 20 18 17 34 34 H 1.09008 * 110.86778 * 277.38768 * 21 20 18 35 35 H 1.08998 * 111.02611 * 153.63750 * 21 20 18 36 36 H 1.09004 * 110.37553 * 204.18856 * 22 21 20 37 37 H 1.08998 * 110.37227 * 81.85563 * 22 21 20 38 38 H 1.00900 * 111.00006 * 240.68441 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0016 11 6 1.3031 -4.8416 0.0022 12 6 -0.0830 -4.7934 0.0070 13 6 -0.7279 -3.5549 0.0009 14 7 -2.1196 -3.5046 0.0014 15 6 -2.7513 -2.3197 -0.1141 16 8 -2.1110 -1.2898 -0.1244 17 6 -4.2530 -2.2744 -0.2302 18 6 -4.7119 -0.8196 -0.3474 19 1 -4.3169 -0.2381 0.4856 20 6 -6.2537 -0.7538 -0.3491 21 6 -6.5520 0.3667 -1.3837 22 6 -5.4259 0.1436 -2.4236 23 7 -4.2455 -0.2477 -1.6240 24 7 -0.0358 -2.4318 0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.0884 -3.6561 0.0029 27 1 1.8213 -5.7891 0.0034 28 1 -0.6592 -5.7068 0.0119 29 1 -2.6345 -4.3226 0.0847 30 1 -4.5658 -2.8268 -1.1163 31 1 -4.6998 -2.7257 0.6557 32 1 -6.6795 -1.7026 -0.6757 33 1 -6.6289 -0.4810 0.6372 34 1 -6.4695 1.3516 -0.9240 35 1 -7.5342 0.2297 -1.8361 36 1 -5.2256 1.0654 -2.9698 37 1 -5.6989 -0.6553 -3.1131 38 1 -3.6379 0.5421 -1.4658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333261351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:59 Heat of formation + Delta-G solvation = 21.095427 kcal Electronic energy + Delta-G solvation = -21382.244242 eV Core-core repulsion = 18225.144896 eV Total energy + Delta-G solvation = -3157.099346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.36004 -38.30650 -37.03366 -33.95406 -32.87094 -31.30719 -30.19939 -29.87473 -28.92985 -26.22800 -25.27159 -22.07574 -21.30045 -21.03866 -19.96984 -18.91936 -17.59730 -16.86892 -16.01707 -15.75024 -15.10665 -14.59522 -14.37161 -14.34688 -13.54176 -13.42772 -13.35206 -12.84675 -12.74131 -12.29776 -11.94959 -11.90056 -11.48133 -11.24369 -11.08500 -10.96808 -10.92008 -10.86455 -10.65406 -10.59310 -10.39676 -9.88477 -9.52983 -8.91265 -8.71547 -8.18916 -7.87451 -7.08634 -6.84205 -6.05774 -4.32395 2.88978 3.16916 3.18967 3.21807 3.33291 3.94456 4.03805 4.11267 4.37538 4.67989 4.82026 5.00221 5.07419 5.35020 5.41660 5.53064 5.66774 5.71380 5.80883 5.84106 5.94257 6.00540 6.12238 6.14518 6.21157 6.35259 6.57743 6.81035 6.91912 6.94904 7.19825 7.31594 7.64949 7.71572 7.74162 7.89371 8.17968 8.30770 8.59661 8.83740 9.13688 9.49740 10.34758 10.55723 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.006461 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.863129 B = 4332.755144 C = 5890.622763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.651 5.651 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.427 4.427 8 H 0.080 0.920 9 C 0.271 3.729 10 C -0.308 4.308 11 C -0.037 4.037 12 C -0.360 4.360 13 C 0.374 3.626 14 N -0.672 5.672 15 C 0.474 3.526 16 O -0.403 6.403 17 C -0.124 4.124 18 C 0.097 3.903 19 H 0.069 0.931 20 C -0.136 4.136 21 C -0.154 4.154 22 C 0.047 3.953 23 N -0.669 5.669 24 N -0.471 5.471 25 H 0.271 0.729 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 -0.278 -0.965 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.269 5.269 2 C -0.171 4.171 3 Si 0.719 3.281 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.458 4.458 8 H 0.098 0.902 9 C 0.146 3.854 10 C -0.331 4.331 11 C -0.061 4.061 12 C -0.386 4.386 13 C 0.136 3.864 14 N -0.319 5.319 15 C 0.255 3.745 16 O -0.266 6.266 17 C -0.166 4.166 18 C -0.013 4.013 19 H 0.087 0.913 20 C -0.175 4.175 21 C -0.194 4.194 22 C -0.083 4.083 23 N -0.299 5.299 24 N -0.190 5.190 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.229 0.771 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.882 0.925 -1.327 12.984 hybrid contribution 0.225 0.025 0.477 0.528 sum -12.657 0.950 -0.849 12.721 Atomic orbital electron populations 1.70335 1.05571 1.27183 1.23824 1.26156 0.95135 1.00380 0.95399 0.86619 0.80223 0.81714 0.79572 1.19263 1.20509 1.19303 1.19516 0.93942 0.89427 1.42925 0.90176 1.18395 0.87337 0.91868 0.87779 1.21611 0.98454 0.93609 1.19457 1.20548 0.93239 0.96445 0.95902 1.20513 0.94782 0.95062 1.28195 1.18664 0.83627 0.90792 0.93361 1.43515 1.04903 1.09530 1.73982 1.20654 0.89313 0.84740 0.79750 1.91087 1.65426 1.30748 1.39341 1.21760 0.94402 0.97938 1.02486 1.21809 0.92217 0.94860 0.92454 0.91304 1.22894 0.96170 0.99136 0.99296 1.23197 0.99819 0.98767 0.97566 1.22877 0.89528 0.99788 0.96069 1.61398 1.15902 1.36341 1.16216 1.68736 1.06795 1.23200 1.20283 0.91754 0.88734 0.88803 0.89256 0.77140 0.89682 0.90302 0.91022 0.91216 0.91674 0.91191 0.91951 0.91077 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.96 9.00 55.55 0.50 -17.46 16 2 C 0.06 1.56 5.50 -17.34 -0.10 1.46 16 3 Si 0.89 19.47 29.56 -169.99 -5.02 14.44 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.43 -11.98 9.14 -37.73 -0.34 -12.32 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.27 7.80 6.55 -85.00 -0.56 7.25 16 10 C -0.31 -7.99 9.83 -38.66 -0.38 -8.37 16 11 C -0.04 -0.87 10.15 -39.39 -0.40 -1.27 16 12 C -0.36 -8.36 9.95 -38.89 -0.39 -8.75 16 13 C 0.37 9.40 7.43 -154.97 -1.15 8.24 16 14 N -0.67 -13.63 5.38 -11.40 -0.06 -13.69 16 15 C 0.47 9.59 7.67 -10.99 -0.08 9.50 16 16 O -0.40 -9.88 11.22 5.56 0.06 -9.81 16 17 C -0.12 -1.80 5.25 -27.88 -0.15 -1.94 16 18 C 0.10 1.36 2.87 -66.72 -0.19 1.17 16 19 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 20 C -0.14 -1.45 6.49 -24.77 -0.16 -1.61 16 21 C -0.15 -1.55 7.08 -24.46 -0.17 -1.72 16 22 C 0.05 0.56 7.58 -2.30 -0.02 0.54 16 23 N -0.67 -10.18 6.30 -103.82 -0.65 -10.84 16 24 N -0.47 -13.45 5.74 -10.26 -0.06 -13.51 16 25 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 26 H 0.09 2.28 8.06 -52.48 -0.42 1.85 16 27 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.40 6.25 8.70 -40.82 -0.36 5.90 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.70 7.85 -51.92 -0.41 0.29 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.35 5.77 8.91 -39.29 -0.35 5.42 16 LS Contribution 314.71 15.07 4.74 4.74 Total: -1.00 -32.53 314.71 -9.88 -42.41 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.30 Total: 11.54 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -4.09 Total: -7.82 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.27 Total: -55.50 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.53 -9.88 -42.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333261351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.502 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds