Wall clock time and date at job start Mon Mar 30 2020 02:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86799 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47339 * 240.00435 * 3 2 1 5 5 H 1.48508 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47366 * 119.99795 * 3 2 1 7 7 C 1.40038 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.41335 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.40605 * 119.78929 * 180.02562 * 9 7 2 11 11 C 1.38312 * 119.13162 * 179.97438 * 10 9 7 12 12 C 1.38692 * 118.66706 * 359.74657 * 11 10 9 13 13 C 1.39634 * 119.49592 * 0.48069 * 12 11 10 14 14 N 1.39266 * 119.57546 * 179.79365 * 13 12 11 15 15 C 1.34776 * 120.00385 * 185.39397 * 14 13 12 16 16 O 1.21273 * 119.99847 * 354.85170 * 15 14 13 17 17 C 1.50696 * 120.00163 * 174.85945 * 15 14 13 18 18 C 1.53002 * 109.47066 * 179.97438 * 17 15 14 19 19 H 1.09003 * 109.87875 * 305.70114 * 18 17 15 20 20 C 1.54314 * 109.89206 * 184.66842 * 18 17 15 21 21 C 1.55396 * 102.90142 * 218.41101 * 20 18 17 22 22 C 1.54900 * 101.74372 * 35.47304 * 21 20 18 23 23 N 1.47448 * 109.89078 * 66.72837 * 18 17 15 24 24 N 1.31930 * 120.85303 * 359.50818 * 13 12 11 25 25 H 0.96998 * 120.00010 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.43571 * 0.02562 * 10 9 7 27 27 H 1.07994 * 120.66371 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.25529 * 180.26884 * 12 11 10 29 29 H 0.97004 * 119.99638 * 5.38316 * 14 13 12 30 30 H 1.09002 * 109.47161 * 299.99217 * 17 15 14 31 31 H 1.08992 * 109.47682 * 59.99638 * 17 15 14 32 32 H 1.09007 * 110.70512 * 336.69143 * 20 18 17 33 33 H 1.08996 * 110.70933 * 99.92185 * 20 18 17 34 34 H 1.09008 * 110.86778 * 277.38768 * 21 20 18 35 35 H 1.08998 * 111.02611 * 153.63750 * 21 20 18 36 36 H 1.09004 * 110.37553 * 204.18856 * 22 21 20 37 37 H 1.08998 * 110.37227 * 81.85563 * 22 21 20 38 38 H 1.00900 * 111.00006 * 240.68441 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0016 11 6 1.3031 -4.8416 0.0022 12 6 -0.0830 -4.7934 0.0070 13 6 -0.7279 -3.5549 0.0009 14 7 -2.1196 -3.5046 0.0014 15 6 -2.7513 -2.3197 -0.1141 16 8 -2.1110 -1.2898 -0.1244 17 6 -4.2530 -2.2744 -0.2302 18 6 -4.7119 -0.8196 -0.3474 19 1 -4.3169 -0.2381 0.4856 20 6 -6.2537 -0.7538 -0.3491 21 6 -6.5520 0.3667 -1.3837 22 6 -5.4259 0.1436 -2.4236 23 7 -4.2455 -0.2477 -1.6240 24 7 -0.0358 -2.4318 0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.0884 -3.6561 0.0029 27 1 1.8213 -5.7891 0.0034 28 1 -0.6592 -5.7068 0.0119 29 1 -2.6345 -4.3226 0.0847 30 1 -4.5658 -2.8268 -1.1163 31 1 -4.6998 -2.7257 0.6557 32 1 -6.6795 -1.7026 -0.6757 33 1 -6.6289 -0.4810 0.6372 34 1 -6.4695 1.3516 -0.9240 35 1 -7.5342 0.2297 -1.8361 36 1 -5.2256 1.0654 -2.9698 37 1 -5.6989 -0.6553 -3.1131 38 1 -3.6379 0.5421 -1.4658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333261351.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:59 Heat of formation + Delta-G solvation = -0.850585 kcal Electronic energy + Delta-G solvation = -21383.195892 eV Core-core repulsion = 18225.144896 eV Total energy + Delta-G solvation = -3158.050996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92352 -39.71532 -38.59951 -35.80144 -34.72611 -32.56296 -32.11421 -30.82352 -30.74086 -27.70677 -26.93054 -23.80775 -23.05057 -22.11186 -21.26557 -20.41687 -19.45567 -17.99256 -17.82616 -17.24181 -16.48470 -16.24365 -16.01560 -15.79535 -15.43946 -14.85816 -14.50006 -14.32176 -14.26971 -13.69479 -13.59041 -13.40616 -12.86386 -12.71946 -12.55314 -12.48180 -12.30449 -12.24851 -11.93048 -11.88554 -11.76474 -11.55777 -11.38719 -10.78342 -10.39946 -9.84469 -9.29132 -8.98310 -8.72675 -7.99996 -6.38094 0.98849 1.30164 1.39941 1.50857 1.54625 2.28257 2.35266 2.51572 3.04557 3.34479 3.79219 3.82382 4.10140 4.14840 4.20928 4.34522 4.42646 4.51084 4.72109 4.73455 4.79890 4.87181 4.90054 4.98372 4.99496 5.06157 5.11684 5.12771 5.15719 5.35141 5.41764 5.72520 5.93870 5.96323 6.17764 6.21266 6.43597 6.50195 6.82361 6.95537 7.14268 7.91222 8.41764 8.61336 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.006461 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.863129 B = 4332.755144 C = 5890.622763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.681 5.681 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.469 4.469 8 H 0.082 0.918 9 C 0.236 3.764 10 C -0.335 4.335 11 C -0.036 4.036 12 C -0.352 4.352 13 C 0.351 3.649 14 N -0.663 5.663 15 C 0.460 3.540 16 O -0.449 6.449 17 C -0.108 4.108 18 C 0.094 3.906 19 H 0.042 0.958 20 C -0.126 4.126 21 C -0.146 4.146 22 C 0.044 3.956 23 N -0.693 5.693 24 N -0.504 5.504 25 H 0.270 0.730 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.129 0.871 29 H 0.417 0.583 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.674 -1.283 -1.027 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.299 5.299 2 C -0.214 4.214 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.100 0.900 9 C 0.111 3.889 10 C -0.358 4.358 11 C -0.060 4.060 12 C -0.377 4.377 13 C 0.112 3.888 14 N -0.312 5.312 15 C 0.244 3.756 16 O -0.315 6.315 17 C -0.149 4.149 18 C -0.017 4.017 19 H 0.060 0.940 20 C -0.165 4.165 21 C -0.185 4.185 22 C -0.085 4.085 23 N -0.321 5.321 24 N -0.224 5.224 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.254 0.746 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.795 -0.139 -1.389 14.861 hybrid contribution 0.758 0.164 0.481 0.912 sum -14.038 0.025 -0.908 14.067 Atomic orbital electron populations 1.70521 1.06978 1.27884 1.24548 1.26980 0.96094 1.03690 0.94673 0.85428 0.78718 0.76819 0.79674 1.18770 1.19713 1.18653 1.19842 0.94306 0.90586 1.45207 0.89959 1.18890 0.88201 0.93262 0.88570 1.21789 0.99058 0.93992 1.20967 1.21013 0.93660 0.97223 0.94085 1.20988 0.95162 0.95902 1.25648 1.19231 0.85660 0.90935 0.93011 1.43576 1.03302 1.10990 1.73364 1.21775 0.91655 0.83936 0.78223 1.91088 1.67015 1.32290 1.41091 1.21746 0.89676 0.98836 1.04669 1.21855 0.94687 0.94011 0.91135 0.94011 1.22854 0.93064 1.00231 1.00324 1.23148 1.00058 0.98556 0.96716 1.22953 0.89178 1.00057 0.96293 1.61440 1.17388 1.36086 1.17211 1.68709 1.07014 1.25266 1.21361 0.91916 0.88051 0.84803 0.85304 0.74589 0.88047 0.86956 0.89330 0.89922 0.91830 0.88883 0.91636 0.90746 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -39.33 9.00 21.84 0.20 -39.13 16 2 C 0.01 0.65 5.50 85.29 0.47 1.12 16 3 Si 0.97 41.44 29.56 68.60 2.03 43.47 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.47 -27.42 9.14 23.47 0.21 -27.21 16 8 H 0.08 4.53 7.85 -2.91 -0.02 4.51 16 9 C 0.24 14.09 6.55 40.20 0.26 14.35 16 10 C -0.34 -17.63 9.83 22.87 0.22 -17.40 16 11 C -0.04 -1.62 10.15 22.40 0.23 -1.39 16 12 C -0.35 -15.68 9.95 22.72 0.23 -15.45 16 13 C 0.35 17.57 7.43 133.23 0.99 18.56 16 14 N -0.66 -26.28 5.38 -308.39 -1.66 -27.94 16 15 C 0.46 18.59 7.67 87.66 0.67 19.26 16 16 O -0.45 -22.82 11.22 -3.01 -0.03 -22.85 16 17 C -0.11 -2.93 5.25 29.85 0.16 -2.77 16 18 C 0.09 2.55 2.87 45.26 0.13 2.68 16 19 H 0.04 1.35 7.94 -2.39 -0.02 1.33 16 20 C -0.13 -2.32 6.49 31.86 0.21 -2.12 16 21 C -0.15 -2.56 7.08 32.07 0.23 -2.34 16 22 C 0.04 0.99 7.58 86.77 0.66 1.65 16 23 N -0.69 -21.22 6.30 -482.37 -3.04 -24.26 16 24 N -0.50 -29.65 5.74 -186.37 -1.07 -30.72 16 25 H 0.27 14.65 8.29 -92.71 -0.77 13.88 16 26 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 27 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 28 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 29 H 0.42 12.20 8.70 -92.71 -0.81 11.39 16 30 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 1.36 7.85 -2.38 -0.02 1.34 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.34 11.68 8.91 -89.69 -0.80 10.88 16 Total: -1.00 -74.58 314.71 0.56 -74.01 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.52 Total: 38.47 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.66 Total: -11.05 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.57 Total: -122.05 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.03 Total: -22.85 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -74.58 0.56 -74.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333261351.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.161 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds