Wall clock time and date at job start Mon Mar 30 2020 02:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 C 1.52998 * 109.46747 * 179.97438 * 17 15 14 19 19 N 1.46908 * 109.46881 * 179.97438 * 18 17 15 20 20 C 1.46902 * 110.99937 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.49622 * 223.74934 * 20 19 18 22 22 C 1.53001 * 117.49847 * 155.08841 * 20 19 18 23 23 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 24 24 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 25 25 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 26 26 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 27 27 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 28 28 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 29 29 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 30 30 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 31 31 H 1.08993 * 109.47474 * 299.99609 * 18 17 15 32 32 H 1.08999 * 109.47468 * 60.00103 * 18 17 15 33 33 H 1.00902 * 110.99950 * 303.95438 * 19 18 17 34 34 H 1.09002 * 115.54990 * 9.41902 * 20 19 18 35 35 H 1.09000 * 117.50022 * 359.97438 * 21 20 19 36 36 H 1.09002 * 117.49867 * 145.02528 * 21 20 19 37 37 H 1.09003 * 117.49657 * 214.98249 * 22 20 19 38 38 H 1.08997 * 117.49911 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 6 9.2897 2.3493 2.1352 19 7 9.8969 3.5219 2.7791 20 6 11.3591 3.5006 2.6400 21 6 12.1913 3.8560 3.8737 22 6 12.0946 4.8406 2.7056 23 7 3.9627 -0.1379 0.8260 24 1 -0.4849 -0.8367 -0.0743 25 1 3.6505 -3.3070 -0.2314 26 1 6.0600 -3.3167 0.3599 27 1 7.0783 -1.2412 1.2628 28 1 5.2413 1.7380 2.0256 29 1 7.3876 3.3159 1.8351 30 1 7.5194 2.4087 3.3610 31 1 9.6714 1.4406 2.6004 32 1 9.5403 2.3473 1.0744 33 1 9.5112 4.3778 2.4092 34 1 11.7563 2.7409 1.9667 35 1 11.6538 4.1061 4.7884 36 1 13.1362 3.3305 4.0118 37 1 12.9759 4.9624 2.0757 38 1 11.4934 5.7380 2.8515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333732674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:16 Heat of formation + Delta-G solvation = 14.383758 kcal Electronic energy + Delta-G solvation = -20208.548957 eV Core-core repulsion = 17051.158572 eV Total energy + Delta-G solvation = -3157.390385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.19781 -38.37853 -37.90398 -34.71447 -34.31653 -33.51146 -31.08261 -30.39944 -28.90196 -25.37981 -23.81335 -22.66795 -21.82632 -21.50724 -21.37831 -19.78502 -18.36646 -17.35124 -16.71257 -16.32975 -15.85146 -15.30863 -15.07977 -14.83041 -14.24701 -13.94532 -13.68251 -13.46801 -12.91016 -12.76560 -12.49737 -12.27242 -12.12107 -11.87565 -11.78280 -11.46886 -11.18103 -10.90839 -10.86065 -10.62693 -10.34058 -10.00102 -9.75592 -9.22583 -9.09752 -8.60626 -8.52835 -7.92796 -7.42480 -7.28855 -4.77105 2.19680 2.66078 3.03221 3.15891 3.45346 3.52722 3.59299 3.84680 3.90837 4.31695 4.57947 4.61666 4.67074 4.73449 4.84486 4.93915 5.11969 5.33673 5.35274 5.40555 5.53406 5.63386 5.75771 5.82597 5.86992 5.89139 6.09181 6.46385 6.52257 6.55976 6.73170 7.03083 7.13401 7.19531 7.42731 7.56835 7.60870 7.77412 8.10598 8.28299 8.43870 8.64845 9.43033 9.96217 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.003659 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.667412 B = 7651.036103 C = 8455.103205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.049 3.951 3 Si 1.144 2.856 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.326 1.326 7 C -0.481 4.481 8 H 0.084 0.916 9 C 0.274 3.726 10 C -0.277 4.277 11 C -0.037 4.037 12 C -0.311 4.311 13 C 0.382 3.618 14 N -0.655 5.655 15 C 0.517 3.483 16 O -0.516 6.516 17 C -0.138 4.138 18 C 0.077 3.923 19 N -0.662 5.662 20 C 0.017 3.983 21 C -0.170 4.170 22 C -0.195 4.195 23 N -0.595 5.595 24 H 0.284 0.716 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.408 0.592 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.342 0.658 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.812 8.717 5.316 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.173 4.173 3 Si 0.977 3.023 4 H -0.214 1.214 5 H -0.208 1.208 6 H -0.259 1.259 7 C -0.513 4.513 8 H 0.102 0.898 9 C 0.150 3.850 10 C -0.300 4.300 11 C -0.061 4.061 12 C -0.336 4.336 13 C 0.151 3.849 14 N -0.300 5.300 15 C 0.303 3.697 16 O -0.392 6.392 17 C -0.178 4.178 18 C -0.052 4.052 19 N -0.293 5.293 20 C -0.094 4.094 21 C -0.208 4.208 22 C -0.233 4.233 23 N -0.320 5.320 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.156 0.844 28 H 0.243 0.757 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.161 0.839 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.527 10.099 5.733 20.199 hybrid contribution 0.193 -2.054 -0.890 2.247 sum 16.720 8.045 4.844 19.177 Atomic orbital electron populations 1.70614 1.08255 1.33042 1.30613 1.27662 0.95230 1.05969 0.88464 0.82131 0.72726 0.70070 0.77398 1.21447 1.20819 1.25890 1.20659 0.93146 0.97015 1.40495 0.89824 1.18191 0.92959 0.86072 0.87806 1.21620 0.94649 0.99829 1.13873 1.20921 0.94356 0.96333 0.94537 1.21516 1.01837 0.92916 1.17295 1.18105 0.89699 0.84607 0.92502 1.43322 1.07313 1.19528 1.59824 1.20520 0.81571 0.87722 0.79887 1.90631 1.61515 1.43967 1.43051 1.21591 0.96254 0.96845 1.03133 1.21693 0.92022 0.93832 0.97702 1.60190 1.02648 1.05478 1.60943 1.22357 0.87227 0.98694 1.01084 1.23140 1.01193 1.02672 0.93789 1.23268 1.03078 0.93856 1.03084 1.66187 1.10219 1.30291 1.25330 0.90436 0.87716 0.87669 0.84448 0.75691 0.88698 0.87585 0.89747 0.93855 0.83895 0.88055 0.88264 0.88892 0.88768 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.71 13.65 55.55 0.76 -20.96 16 2 C 0.05 1.31 5.51 -17.34 -0.10 1.22 16 3 Si 1.14 27.42 25.93 -169.99 -4.41 23.01 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.92 6.55 56.52 0.37 -6.55 16 6 H -0.33 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.48 -13.11 9.51 -37.74 -0.36 -13.47 16 8 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 9 C 0.27 7.24 6.27 -85.00 -0.53 6.71 16 10 C -0.28 -6.69 9.83 -38.66 -0.38 -7.07 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.31 -7.06 8.83 -38.89 -0.34 -7.40 16 13 C 0.38 8.77 7.51 -154.96 -1.16 7.60 16 14 N -0.66 -11.87 5.41 -11.40 -0.06 -11.93 16 15 C 0.52 8.23 7.67 -10.98 -0.08 8.14 16 16 O -0.52 -9.87 12.78 5.57 0.07 -9.80 16 17 C -0.14 -1.46 5.96 -27.88 -0.17 -1.63 16 18 C 0.08 0.82 4.83 -3.82 -0.02 0.80 16 19 N -0.66 -6.00 6.75 -106.72 -0.72 -6.72 16 20 C 0.02 0.14 6.25 -67.71 -0.42 -0.28 16 21 C -0.17 -1.31 10.46 -26.69 -0.28 -1.59 16 22 C -0.19 -1.37 10.34 -26.69 -0.28 -1.64 16 23 N -0.60 -15.11 5.08 -10.26 -0.05 -15.17 16 24 H 0.28 7.36 8.73 -40.82 -0.36 7.00 16 25 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 26 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 27 H 0.14 3.03 5.33 -52.50 -0.28 2.75 16 28 H 0.41 6.38 8.83 -40.82 -0.36 6.02 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 32 H 0.04 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.34 2.63 8.69 -39.29 -0.34 2.29 16 34 H 0.10 0.89 7.90 -51.93 -0.41 0.48 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -30.76 322.17 -9.30 -40.06 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.22 Total: 6.48 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -4.52 Total: -9.83 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.08 Total: -54.78 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 27.42 SS G_CDS: -4.41 Total: 23.01 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.76 -9.30 -40.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333732674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.442 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds