Wall clock time and date at job start Mon Mar 30 2020 02:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86798 * 120.00200 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00462 * 3 2 1 5 5 H 1.48496 * 109.47185 * 210.00415 * 3 2 1 6 6 H 1.48507 * 109.47022 * 330.00805 * 3 2 1 7 7 C 1.40026 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99847 * 15.96188 * 7 2 1 9 9 C 1.41332 * 120.00099 * 195.96686 * 7 2 1 10 10 C 1.40618 * 119.79279 * 188.65797 * 9 7 2 11 11 C 1.38307 * 119.13361 * 179.76924 * 10 9 7 12 12 C 1.38697 * 118.66309 * 0.49942 * 11 10 9 13 13 C 1.39625 * 119.50044 * 359.74304 * 12 11 10 14 14 N 1.39273 * 119.57442 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00030 * 18.85806 * 14 13 12 16 16 O 1.21269 * 119.99729 * 5.58409 * 15 14 13 17 17 C 1.50703 * 119.99755 * 185.58691 * 15 14 13 18 18 C 1.52998 * 109.46747 * 179.97438 * 17 15 14 19 19 N 1.46908 * 109.46881 * 179.97438 * 18 17 15 20 20 C 1.46902 * 110.99937 * 180.02562 * 19 18 17 21 21 C 1.52998 * 117.49622 * 223.74934 * 20 19 18 22 22 C 1.53001 * 117.49847 * 155.08841 * 20 19 18 23 23 N 1.31935 * 120.85144 * 0.02562 * 13 12 11 24 24 H 0.96993 * 119.99871 * 174.92857 * 1 2 3 25 25 H 1.08004 * 120.42805 * 359.97438 * 10 9 7 26 26 H 1.07994 * 120.66526 * 180.21918 * 11 10 9 27 27 H 1.07999 * 120.24792 * 179.77187 * 12 11 10 28 28 H 0.97004 * 119.99752 * 198.86317 * 14 13 12 29 29 H 1.09007 * 109.46956 * 299.99851 * 17 15 14 30 30 H 1.08999 * 109.47052 * 59.99784 * 17 15 14 31 31 H 1.08993 * 109.47474 * 299.99609 * 18 17 15 32 32 H 1.08999 * 109.47468 * 60.00103 * 18 17 15 33 33 H 1.00902 * 110.99950 * 303.95438 * 19 18 17 34 34 H 1.09002 * 115.54990 * 9.41902 * 20 19 18 35 35 H 1.09000 * 117.50022 * 359.97438 * 21 20 19 36 36 H 1.09002 * 117.49867 * 145.02528 * 21 20 19 37 37 H 1.09003 * 117.49657 * 214.98249 * 22 20 19 38 38 H 1.08997 * 117.49911 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4891 2.0463 1.4001 5 1 3.5390 1.4401 -0.7001 6 1 1.4389 2.6527 -0.6999 7 6 2.0076 -1.2127 -0.0005 8 1 1.4988 -2.1298 -0.2582 9 6 3.3800 -1.2365 0.3361 10 6 4.1224 -2.4176 0.1595 11 6 5.4656 -2.4243 0.4889 12 6 6.0326 -1.2635 0.9938 13 6 5.2413 -0.1239 1.1510 14 7 5.8089 1.0424 1.6583 15 6 7.1468 1.2045 1.6390 16 8 7.8492 0.3826 1.0897 17 6 7.7697 2.4070 2.3001 18 6 9.2897 2.3493 2.1352 19 7 9.8969 3.5219 2.7791 20 6 11.3591 3.5006 2.6400 21 6 12.1913 3.8560 3.8737 22 6 12.0946 4.8406 2.7056 23 7 3.9627 -0.1379 0.8260 24 1 -0.4849 -0.8367 -0.0743 25 1 3.6505 -3.3070 -0.2314 26 1 6.0600 -3.3167 0.3599 27 1 7.0783 -1.2412 1.2628 28 1 5.2413 1.7380 2.0256 29 1 7.3876 3.3159 1.8351 30 1 7.5194 2.4087 3.3610 31 1 9.6714 1.4406 2.6004 32 1 9.5403 2.3473 1.0744 33 1 9.5112 4.3778 2.4092 34 1 11.7563 2.7409 1.9667 35 1 11.6538 4.1061 4.7884 36 1 13.1362 3.3305 4.0118 37 1 12.9759 4.9624 2.0757 38 1 11.4934 5.7380 2.8515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333732674.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:15 Heat of formation + Delta-G solvation = -5.859560 kcal Electronic energy + Delta-G solvation = -20209.426774 eV Core-core repulsion = 17051.158572 eV Total energy + Delta-G solvation = -3158.268202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68580 -39.94564 -38.71616 -36.29701 -35.37113 -35.19928 -32.95631 -31.79699 -30.21381 -27.27912 -25.03655 -23.61760 -23.25428 -22.82809 -22.12520 -21.27978 -20.26450 -18.82174 -18.09150 -17.28198 -16.90298 -16.74538 -16.40555 -16.17626 -15.78717 -15.45944 -15.00142 -14.92743 -14.34758 -14.25265 -14.02567 -13.73327 -13.41460 -13.01672 -12.93113 -12.72266 -12.33587 -12.26392 -12.15812 -11.85362 -11.58585 -11.55590 -11.22720 -11.04263 -10.72738 -10.39387 -9.85064 -9.32583 -9.30239 -9.20784 -6.80375 0.50868 0.76134 1.51622 1.54657 1.74216 1.83427 2.00884 2.40950 2.63230 2.93054 3.05128 3.56238 3.66511 3.99759 4.05310 4.08627 4.10897 4.16054 4.39183 4.43361 4.58584 4.66271 4.68278 4.69661 4.81628 4.83138 4.92605 5.02438 5.11715 5.32403 5.35818 5.39529 5.44192 5.72706 5.82097 5.95302 6.00744 6.30458 6.40900 6.43474 6.65534 7.07325 7.53182 7.92708 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029633 B = 0.003659 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.667412 B = 7651.036103 C = 8455.103205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.020 3.980 3 Si 1.176 2.824 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.321 1.321 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.257 3.743 10 C -0.296 4.296 11 C -0.031 4.031 12 C -0.310 4.310 13 C 0.373 3.627 14 N -0.653 5.653 15 C 0.518 3.482 16 O -0.549 6.549 17 C -0.122 4.122 18 C 0.084 3.916 19 N -0.659 5.659 20 C -0.001 4.001 21 C -0.172 4.172 22 C -0.181 4.181 23 N -0.607 5.607 24 H 0.282 0.718 25 H 0.113 0.887 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.421 0.579 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.352 0.648 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.029 10.398 6.279 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.197 4.197 3 Si 1.006 2.994 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.253 1.253 7 C -0.545 4.545 8 H 0.086 0.914 9 C 0.132 3.868 10 C -0.318 4.318 11 C -0.055 4.055 12 C -0.335 4.335 13 C 0.141 3.859 14 N -0.299 5.299 15 C 0.307 3.693 16 O -0.425 6.425 17 C -0.162 4.162 18 C -0.046 4.046 19 N -0.291 5.291 20 C -0.111 4.111 21 C -0.211 4.211 22 C -0.219 4.219 23 N -0.333 5.333 24 H 0.093 0.907 25 H 0.131 0.869 26 H 0.159 0.841 27 H 0.165 0.835 28 H 0.258 0.742 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.172 0.828 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.754 11.807 6.725 23.159 hybrid contribution -0.256 -2.634 -1.157 2.889 sum 18.498 9.172 5.568 21.385 Atomic orbital electron populations 1.70639 1.08515 1.32913 1.32648 1.28491 0.95489 1.07811 0.87946 0.81722 0.71373 0.68197 0.78158 1.19541 1.22046 1.25270 1.20654 0.94117 0.96786 1.42956 0.91409 1.18386 0.93028 0.87407 0.87964 1.21778 0.95602 0.99615 1.14792 1.21325 0.93801 0.97583 0.92833 1.21875 1.02311 0.93055 1.16217 1.18495 0.89088 0.86493 0.91848 1.43443 1.08351 1.18508 1.59637 1.21500 0.80405 0.88599 0.78819 1.90603 1.61913 1.45613 1.44420 1.21589 0.95599 0.95086 1.03929 1.21528 0.92081 0.94002 0.96945 1.60154 1.02997 1.05300 1.60619 1.22414 0.87035 0.99861 1.01838 1.23188 1.01261 1.03066 0.93555 1.23328 1.02994 0.93286 1.02321 1.66193 1.11421 1.30079 1.25566 0.90750 0.86878 0.84081 0.83467 0.74183 0.85650 0.85400 0.91415 0.94999 0.82822 0.88676 0.88647 0.88200 0.87796 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.43 13.65 21.84 0.30 -45.14 16 2 C 0.02 1.10 5.51 85.29 0.47 1.57 16 3 Si 1.18 55.14 25.93 68.60 1.78 56.92 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -14.13 6.55 99.48 0.65 -13.48 16 6 H -0.32 -14.56 7.11 99.48 0.71 -13.85 16 7 C -0.51 -28.69 9.51 23.47 0.22 -28.47 16 8 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 9 C 0.26 13.67 6.27 40.21 0.25 13.93 16 10 C -0.30 -14.14 9.83 22.87 0.22 -13.92 16 11 C -0.03 -1.33 10.15 22.40 0.23 -1.10 16 12 C -0.31 -13.50 8.83 22.71 0.20 -13.30 16 13 C 0.37 16.50 7.51 133.23 1.00 17.50 16 14 N -0.65 -22.08 5.41 -308.38 -1.67 -23.75 16 15 C 0.52 15.15 7.67 87.66 0.67 15.82 16 16 O -0.55 -19.94 12.78 -2.99 -0.04 -19.98 16 17 C -0.12 -2.16 5.96 29.85 0.18 -1.99 16 18 C 0.08 1.60 4.83 86.30 0.42 2.02 16 19 N -0.66 -10.23 6.75 -491.56 -3.32 -13.54 16 20 C 0.00 -0.02 6.25 44.91 0.28 0.26 16 21 C -0.17 -2.32 10.46 30.62 0.32 -2.00 16 22 C -0.18 -2.09 10.34 30.62 0.32 -1.77 16 23 N -0.61 -30.34 5.08 -186.36 -0.95 -31.29 16 24 H 0.28 15.09 8.73 -92.71 -0.81 14.28 16 25 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 26 H 0.14 4.91 8.06 -2.91 -0.02 4.88 16 27 H 0.15 6.18 5.33 -3.19 -0.02 6.16 16 28 H 0.42 11.93 8.83 -92.70 -0.82 11.11 16 29 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.03 0.68 8.10 -2.39 -0.02 0.66 16 33 H 0.35 4.26 8.69 -89.69 -0.78 3.48 16 34 H 0.10 1.55 7.90 -2.39 -0.02 1.53 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -66.39 322.17 0.29 -66.10 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.60 Total: 22.10 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.78 Total: -11.44 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -5.63 Total: -113.71 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 55.14 SS G_CDS: 1.78 Total: 56.92 kcal Total: -66.39 0.29 -66.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333732674.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.242 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds