Wall clock time and date at job start Mon Mar 30 2020 02:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86804 * 120.00338 * 2 1 4 4 H 1.48500 * 109.46813 * 85.00082 * 3 2 1 5 5 H 1.48498 * 109.47020 * 205.00151 * 3 2 1 6 6 H 1.48495 * 109.46704 * 325.00351 * 3 2 1 7 7 C 1.40033 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99652 * 185.94114 * 7 2 1 9 9 C 1.41335 * 120.00011 * 5.93292 * 7 2 1 10 10 C 1.40614 * 119.78891 * 185.87181 * 9 7 2 11 11 C 1.38307 * 119.13106 * 179.77176 * 10 9 7 12 12 C 1.38695 * 118.66298 * 0.49956 * 11 10 9 13 13 C 1.39632 * 119.50057 * 359.74399 * 12 11 10 14 14 N 1.39268 * 119.57113 * 180.02562 * 13 12 11 15 15 C 1.34783 * 119.99859 * 174.99926 * 14 13 12 16 16 O 1.21272 * 119.99739 * 5.53392 * 15 14 13 17 17 C 1.50692 * 120.00107 * 185.54016 * 15 14 13 18 18 C 1.53007 * 109.47282 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47503 * 179.97438 * 18 17 15 20 20 C 1.53936 * 113.73284 * 271.73236 * 19 18 17 21 21 N 1.47957 * 86.17978 * 221.91870 * 20 19 18 22 22 C 1.47959 * 90.76334 * 24.68788 * 21 20 19 23 23 N 1.31919 * 120.85059 * 0.02562 * 13 12 11 24 24 H 0.96999 * 119.99630 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.43471 * 0.03222 * 10 9 7 26 26 H 1.07991 * 120.66914 * 180.22774 * 11 10 9 27 27 H 1.08004 * 120.24584 * 179.76937 * 12 11 10 28 28 H 0.97002 * 120.00434 * 355.00044 * 14 13 12 29 29 H 1.08996 * 109.47259 * 299.99710 * 17 15 14 30 30 H 1.09004 * 109.47391 * 59.99991 * 17 15 14 31 31 H 1.08996 * 109.46929 * 300.00148 * 18 17 15 32 32 H 1.09004 * 109.46723 * 59.99817 * 18 17 15 33 33 H 1.09002 * 112.93719 * 43.43422 * 19 18 17 34 34 H 1.08999 * 113.76094 * 336.23386 * 20 19 18 35 35 H 1.08993 * 113.76281 * 107.60204 * 20 19 18 36 36 H 1.00904 * 111.00342 * 137.57771 * 21 20 19 37 37 H 1.08996 * 113.76147 * 220.99459 * 22 21 20 38 38 H 1.08997 * 113.86131 * 89.64282 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3834 2.1073 1.3948 5 1 3.5879 1.4119 -0.5917 6 1 1.4958 2.6198 -0.8030 7 6 2.0075 -1.2128 0.0005 8 1 3.0831 -1.2152 0.0974 9 6 1.3065 -2.4335 -0.1254 10 6 1.9972 -3.6519 -0.0005 11 6 1.2969 -4.8384 -0.1215 12 6 -0.0660 -4.7838 -0.3732 13 6 -0.6940 -3.5424 -0.4921 14 7 -2.0625 -3.4858 -0.7443 15 6 -2.6962 -2.2963 -0.7606 16 8 -2.0602 -1.2691 -0.6558 17 6 -4.1948 -2.2429 -0.9089 18 6 -4.6569 -0.7843 -0.8967 19 6 -6.1784 -0.7300 -1.0479 20 6 -6.6547 -0.6941 -2.5112 21 7 -7.6342 0.3205 -2.0638 22 6 -6.7629 0.6888 -0.9261 23 7 -0.0078 -2.4225 -0.3686 24 1 -0.4849 0.8401 -0.0004 25 1 3.0599 -3.6611 0.1916 26 1 1.8018 -5.7882 -0.0263 27 1 -0.6371 -5.6947 -0.4760 28 1 -2.5597 -4.3024 -0.9082 29 1 -4.4835 -2.7079 -1.8515 30 1 -4.6611 -2.7783 -0.0818 31 1 -4.3683 -0.3197 0.0461 32 1 -4.1906 -0.2486 -1.7235 33 1 -6.6929 -1.4705 -0.4354 34 1 -5.9091 -0.3081 -3.2064 35 1 -7.1099 -1.6254 -2.8479 36 1 -7.7003 1.0771 -2.7282 37 1 -7.3045 0.8622 0.0037 38 1 -6.0484 1.4793 -1.1557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333733445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:52 Heat of formation + Delta-G solvation = 43.265720 kcal Electronic energy + Delta-G solvation = -20854.999002 eV Core-core repulsion = 17698.861033 eV Total energy + Delta-G solvation = -3156.137970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73179 -39.06971 -37.45506 -34.13948 -32.98711 -32.83598 -30.30814 -29.20656 -27.30215 -26.08933 -25.50269 -23.32796 -21.64708 -20.98875 -19.62822 -19.16030 -17.69113 -16.59955 -16.13600 -15.81496 -15.44559 -15.04823 -14.67403 -14.44130 -13.96210 -13.60274 -13.26298 -13.01261 -12.78782 -12.64653 -12.14056 -11.94528 -11.87393 -11.32927 -11.15444 -11.03639 -10.94088 -10.68265 -10.63993 -10.47692 -10.35541 -9.96402 -9.61398 -9.10216 -9.00015 -8.90199 -7.97120 -7.19418 -6.94726 -6.18364 -4.38420 2.78674 3.07577 3.16785 3.19630 3.26815 3.77985 3.87304 3.98198 4.06189 4.39879 4.68698 4.91702 5.15948 5.22145 5.25091 5.40982 5.43751 5.62114 5.63981 5.71056 5.83822 5.91858 6.01788 6.04710 6.14430 6.30542 6.47332 6.50107 6.71134 6.84976 6.86221 7.04361 7.24489 7.56629 7.64109 7.81990 8.08979 8.21274 8.49211 8.75872 9.05287 9.30790 10.25118 10.47609 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.005215 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.465345 B = 5368.173777 C = 6958.374412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.278 1.278 7 C -0.428 4.428 8 H 0.082 0.918 9 C 0.273 3.727 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.670 5.670 15 C 0.467 3.533 16 O -0.413 6.413 17 C -0.136 4.136 18 C -0.095 4.095 19 C -0.113 4.113 20 C 0.005 3.995 21 N -0.641 5.641 22 C 0.006 3.994 23 N -0.476 5.476 24 H 0.272 0.728 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.398 0.602 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.316 0.684 37 H 0.085 0.915 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 -0.904 -2.732 11.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.278 5.278 2 C -0.169 4.169 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.459 4.459 8 H 0.100 0.900 9 C 0.148 3.852 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.133 3.867 14 N -0.317 5.317 15 C 0.250 3.750 16 O -0.277 6.277 17 C -0.176 4.176 18 C -0.133 4.133 19 C -0.132 4.132 20 C -0.125 4.125 21 N -0.265 5.265 22 C -0.124 4.124 23 N -0.195 5.195 24 H 0.084 0.916 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.231 0.769 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.434 0.490 -2.392 12.672 hybrid contribution 1.302 -0.230 -0.420 1.388 sum -11.132 0.260 -2.812 11.485 Atomic orbital electron populations 1.70256 1.05934 1.27478 1.24082 1.26139 0.95057 1.00572 0.95082 0.86511 0.80740 0.81960 0.78800 1.19755 1.18677 1.20281 1.19566 0.94451 0.89541 1.42294 0.89972 1.18385 0.87244 0.91927 0.87670 1.21630 0.99266 0.93568 1.18468 1.20567 0.93293 0.96533 0.95699 1.20507 0.95923 0.94981 1.26939 1.18631 0.83886 0.90831 0.93359 1.43500 1.07297 1.09300 1.71569 1.20834 0.89467 0.84771 0.79975 1.91115 1.65858 1.31226 1.39502 1.21655 0.93911 0.98926 1.03144 1.21333 0.92543 0.95524 1.03916 1.23051 0.96136 0.97433 0.96547 1.23822 0.94211 0.97655 0.96789 1.66888 1.37943 1.12846 1.08826 1.23754 0.95051 0.97043 0.96546 1.68645 1.07299 1.23620 1.19903 0.91612 0.88589 0.88658 0.89126 0.76863 0.90021 0.89851 0.90571 0.91124 0.88481 0.91385 0.89702 0.87229 0.89649 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.20 9.18 55.55 0.51 -17.69 16 2 C 0.06 1.60 5.48 -17.34 -0.10 1.50 16 3 Si 0.90 19.29 29.56 -169.99 -5.03 14.26 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.43 -11.85 9.13 -37.73 -0.34 -12.20 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.73 6.53 -85.00 -0.55 7.18 16 10 C -0.31 -7.80 9.83 -38.66 -0.38 -8.18 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.10 9.95 -38.89 -0.39 -8.49 16 13 C 0.37 9.11 7.43 -154.98 -1.15 7.96 16 14 N -0.67 -13.05 5.38 -11.41 -0.06 -13.12 16 15 C 0.47 9.11 7.79 -10.99 -0.09 9.02 16 16 O -0.41 -10.11 11.87 5.56 0.07 -10.05 16 17 C -0.14 -1.79 5.69 -27.88 -0.16 -1.95 16 18 C -0.09 -1.24 4.36 -26.73 -0.12 -1.36 16 19 C -0.11 -1.19 3.83 -89.69 -0.34 -1.54 16 20 C 0.01 0.05 8.46 -2.77 -0.02 0.03 16 21 N -0.64 -6.59 8.53 -117.04 -1.00 -7.59 16 22 C 0.01 0.06 8.47 -2.77 -0.02 0.04 16 23 N -0.48 -13.42 5.77 -10.26 -0.06 -13.48 16 24 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 25 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 28 H 0.40 5.92 8.70 -40.82 -0.36 5.57 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.07 1.02 7.79 -51.93 -0.40 0.62 16 33 H 0.10 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.32 2.80 8.91 -39.29 -0.35 2.45 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -32.75 319.23 -10.11 -42.86 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.29 Total: 9.19 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -4.06 Total: -9.21 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.61 Total: -51.87 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.75 -10.11 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333733445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.125 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds