Wall clock time and date at job start Mon Mar 30 2020 02:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86804 * 120.00338 * 2 1 4 4 H 1.48500 * 109.46813 * 85.00082 * 3 2 1 5 5 H 1.48498 * 109.47020 * 205.00151 * 3 2 1 6 6 H 1.48495 * 109.46704 * 325.00351 * 3 2 1 7 7 C 1.40033 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99652 * 185.94114 * 7 2 1 9 9 C 1.41335 * 120.00011 * 5.93292 * 7 2 1 10 10 C 1.40614 * 119.78891 * 185.87181 * 9 7 2 11 11 C 1.38307 * 119.13106 * 179.77176 * 10 9 7 12 12 C 1.38695 * 118.66298 * 0.49956 * 11 10 9 13 13 C 1.39632 * 119.50057 * 359.74399 * 12 11 10 14 14 N 1.39268 * 119.57113 * 180.02562 * 13 12 11 15 15 C 1.34783 * 119.99859 * 174.99926 * 14 13 12 16 16 O 1.21272 * 119.99739 * 5.53392 * 15 14 13 17 17 C 1.50692 * 120.00107 * 185.54016 * 15 14 13 18 18 C 1.53007 * 109.47282 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47503 * 179.97438 * 18 17 15 20 20 C 1.53936 * 113.73284 * 271.73236 * 19 18 17 21 21 N 1.47957 * 86.17978 * 221.91870 * 20 19 18 22 22 C 1.47959 * 90.76334 * 24.68788 * 21 20 19 23 23 N 1.31919 * 120.85059 * 0.02562 * 13 12 11 24 24 H 0.96999 * 119.99630 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.43471 * 0.03222 * 10 9 7 26 26 H 1.07991 * 120.66914 * 180.22774 * 11 10 9 27 27 H 1.08004 * 120.24584 * 179.76937 * 12 11 10 28 28 H 0.97002 * 120.00434 * 355.00044 * 14 13 12 29 29 H 1.08996 * 109.47259 * 299.99710 * 17 15 14 30 30 H 1.09004 * 109.47391 * 59.99991 * 17 15 14 31 31 H 1.08996 * 109.46929 * 300.00148 * 18 17 15 32 32 H 1.09004 * 109.46723 * 59.99817 * 18 17 15 33 33 H 1.09002 * 112.93719 * 43.43422 * 19 18 17 34 34 H 1.08999 * 113.76094 * 336.23386 * 20 19 18 35 35 H 1.08993 * 113.76281 * 107.60204 * 20 19 18 36 36 H 1.00904 * 111.00342 * 137.57771 * 21 20 19 37 37 H 1.08996 * 113.76147 * 220.99459 * 22 21 20 38 38 H 1.08997 * 113.86131 * 89.64282 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3834 2.1073 1.3948 5 1 3.5879 1.4119 -0.5917 6 1 1.4958 2.6198 -0.8030 7 6 2.0075 -1.2128 0.0005 8 1 3.0831 -1.2152 0.0974 9 6 1.3065 -2.4335 -0.1254 10 6 1.9972 -3.6519 -0.0005 11 6 1.2969 -4.8384 -0.1215 12 6 -0.0660 -4.7838 -0.3732 13 6 -0.6940 -3.5424 -0.4921 14 7 -2.0625 -3.4858 -0.7443 15 6 -2.6962 -2.2963 -0.7606 16 8 -2.0602 -1.2691 -0.6558 17 6 -4.1948 -2.2429 -0.9089 18 6 -4.6569 -0.7843 -0.8967 19 6 -6.1784 -0.7300 -1.0479 20 6 -6.6547 -0.6941 -2.5112 21 7 -7.6342 0.3205 -2.0638 22 6 -6.7629 0.6888 -0.9261 23 7 -0.0078 -2.4225 -0.3686 24 1 -0.4849 0.8401 -0.0004 25 1 3.0599 -3.6611 0.1916 26 1 1.8018 -5.7882 -0.0263 27 1 -0.6371 -5.6947 -0.4760 28 1 -2.5597 -4.3024 -0.9082 29 1 -4.4835 -2.7079 -1.8515 30 1 -4.6611 -2.7783 -0.0818 31 1 -4.3683 -0.3197 0.0461 32 1 -4.1906 -0.2486 -1.7235 33 1 -6.6929 -1.4705 -0.4354 34 1 -5.9091 -0.3081 -3.2064 35 1 -7.1099 -1.6254 -2.8479 36 1 -7.7003 1.0771 -2.7282 37 1 -7.3045 0.8622 0.0037 38 1 -6.0484 1.4793 -1.1557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333733445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:52 Heat of formation + Delta-G solvation = 20.257057 kcal Electronic energy + Delta-G solvation = -20855.996733 eV Core-core repulsion = 17698.861033 eV Total energy + Delta-G solvation = -3157.135700 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02269 -40.31913 -39.19178 -35.92755 -34.81677 -33.99508 -32.21888 -31.00269 -28.45785 -27.36620 -26.87180 -24.63946 -23.39016 -22.68705 -20.77741 -20.44472 -19.51991 -17.94107 -17.75802 -16.83263 -16.68791 -16.43029 -16.26682 -16.17829 -15.50295 -15.08764 -14.83376 -14.48213 -14.26364 -13.72823 -13.64396 -13.48287 -13.02043 -12.89972 -12.72083 -12.58017 -12.32969 -12.29925 -12.08258 -11.80464 -11.56565 -11.43459 -11.28158 -10.84622 -10.55765 -9.90380 -9.89064 -9.06765 -8.79620 -8.09924 -6.40990 0.92916 1.25383 1.38639 1.49956 1.53376 2.21484 2.25701 2.41879 2.99014 3.18683 3.52253 3.75999 3.96115 4.06210 4.31145 4.35196 4.42265 4.46119 4.50450 4.67173 4.74896 4.80442 4.83575 4.89560 4.95051 4.96328 5.07429 5.09186 5.14527 5.28908 5.30140 5.46854 5.69076 5.88429 5.93205 6.16567 6.29700 6.38854 6.77427 6.88008 7.09081 7.77138 8.35764 8.55889 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.005215 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.465345 B = 5368.173777 C = 6958.374412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.015 3.985 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.257 1.257 6 H -0.274 1.274 7 C -0.470 4.470 8 H 0.084 0.916 9 C 0.238 3.762 10 C -0.333 4.333 11 C -0.036 4.036 12 C -0.347 4.347 13 C 0.348 3.652 14 N -0.659 5.659 15 C 0.456 3.544 16 O -0.468 6.468 17 C -0.118 4.118 18 C -0.087 4.087 19 C -0.105 4.105 20 C 0.009 3.991 21 N -0.647 5.647 22 C 0.004 3.996 23 N -0.510 5.510 24 H 0.271 0.729 25 H 0.103 0.897 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.421 0.579 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.324 0.676 37 H 0.090 0.910 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.996 -2.264 -3.110 13.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.211 4.211 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.199 1.199 7 C -0.501 4.501 8 H 0.102 0.898 9 C 0.113 3.887 10 C -0.356 4.356 11 C -0.060 4.060 12 C -0.372 4.372 13 C 0.109 3.891 14 N -0.308 5.308 15 C 0.241 3.759 16 O -0.336 6.336 17 C -0.158 4.158 18 C -0.125 4.125 19 C -0.124 4.124 20 C -0.122 4.122 21 N -0.272 5.272 22 C -0.127 4.127 23 N -0.230 5.230 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.154 0.846 27 H 0.150 0.850 28 H 0.259 0.741 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.916 -0.928 -2.779 14.221 hybrid contribution 1.681 0.010 -0.318 1.711 sum -12.235 -0.919 -3.098 12.654 Atomic orbital electron populations 1.70436 1.07407 1.28110 1.25233 1.26981 0.95949 1.03918 0.94251 0.85332 0.79220 0.76920 0.79058 1.18858 1.18064 1.19895 1.19880 0.94805 0.90712 1.44681 0.89772 1.18872 0.88103 0.93319 0.88419 1.21812 0.99925 0.93935 1.19882 1.21047 0.93667 0.97313 0.93947 1.21003 0.96186 0.95844 1.24204 1.19200 0.85880 0.90934 0.93070 1.43537 1.05639 1.10789 1.70846 1.21999 0.91892 0.83841 0.78163 1.91113 1.67646 1.33039 1.41756 1.21624 0.88791 0.99481 1.05877 1.21213 0.94378 0.95160 1.01782 1.22989 0.93901 0.97992 0.97490 1.23837 0.94086 0.98112 0.96118 1.66885 1.37880 1.13354 1.09083 1.23771 0.95087 0.96854 0.96940 1.68616 1.07591 1.25822 1.20960 0.91836 0.87901 0.84608 0.84994 0.74142 0.86813 0.87009 0.93028 0.93198 0.87257 0.91551 0.88421 0.86369 0.89169 0.91726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.07 9.18 21.84 0.20 -39.87 16 2 C 0.01 0.80 5.48 85.29 0.47 1.26 16 3 Si 0.97 41.07 29.56 68.60 2.03 43.10 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 5 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.47 -27.18 9.13 23.47 0.21 -26.96 16 8 H 0.08 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.24 13.99 6.53 40.21 0.26 14.25 16 10 C -0.33 -17.12 9.83 22.87 0.22 -16.89 16 11 C -0.04 -1.57 10.15 22.40 0.23 -1.34 16 12 C -0.35 -14.91 9.95 22.72 0.23 -14.68 16 13 C 0.35 16.92 7.43 133.24 0.99 17.91 16 14 N -0.66 -24.79 5.38 -308.39 -1.66 -26.45 16 15 C 0.46 17.61 7.79 87.65 0.68 18.29 16 16 O -0.47 -23.74 11.87 -3.01 -0.04 -23.77 16 17 C -0.12 -2.85 5.69 29.85 0.17 -2.68 16 18 C -0.09 -2.22 4.36 30.59 0.13 -2.08 16 19 C -0.11 -2.02 3.83 -10.15 -0.04 -2.05 16 20 C 0.01 0.15 8.46 86.41 0.73 0.88 16 21 N -0.65 -12.10 8.53 -524.22 -4.47 -16.57 16 22 C 0.00 0.07 8.47 86.40 0.73 0.80 16 23 N -0.51 -29.59 5.77 -186.37 -1.08 -30.66 16 24 H 0.27 14.71 8.29 -92.71 -0.77 13.94 16 25 H 0.10 4.95 8.06 -2.91 -0.02 4.92 16 26 H 0.14 4.80 8.06 -2.92 -0.02 4.77 16 27 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 28 H 0.42 11.28 8.70 -92.71 -0.81 10.47 16 29 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.05 1.47 7.79 -2.39 -0.02 1.45 16 33 H 0.11 1.88 8.13 -2.39 -0.02 1.86 16 34 H 0.07 1.20 7.89 -2.39 -0.02 1.18 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.32 5.25 8.91 -89.69 -0.80 4.45 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -75.02 319.23 -0.51 -75.53 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.52 Total: 31.99 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 5.02 Total: -13.29 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -7.01 Total: -113.56 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.04 Total: -23.77 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -75.02 -0.51 -75.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333733445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.792 kcal (2) G-P(sol) polarization free energy of solvation -75.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds