Wall clock time and date at job start Mon Mar 30 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86808 * 119.99786 * 2 1 4 4 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46933 * 299.99639 * 3 2 1 6 6 H 1.48503 * 109.47004 * 59.99538 * 3 2 1 7 7 C 1.40022 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.41318 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.40593 * 119.78648 * 180.02562 * 9 7 2 11 11 C 1.38348 * 119.14595 * 180.27855 * 10 9 7 12 12 C 1.38635 * 118.68099 * 359.50083 * 11 10 9 13 13 C 1.39758 * 119.49158 * 0.49892 * 12 11 10 14 14 N 1.38825 * 119.58357 * 179.72041 * 13 12 11 15 15 C 1.46501 * 119.99986 * 0.02964 * 14 13 12 16 16 C 1.52998 * 109.47337 * 179.97438 * 15 14 13 17 17 C 1.52992 * 109.47380 * 179.97438 * 16 15 14 18 18 H 1.09005 * 110.85682 * 305.70111 * 17 16 15 19 19 C 1.54475 * 110.97284 * 181.91326 * 17 16 15 20 20 N 1.46764 * 105.47738 * 216.46801 * 19 17 16 21 21 C 1.34420 * 111.29738 * 17.00888 * 20 19 17 22 22 O 1.21285 * 124.93962 * 179.56488 * 21 20 19 23 23 C 1.51342 * 110.13219 * 359.56982 * 21 20 19 24 24 N 1.31979 * 120.83039 * 359.74726 * 13 12 11 25 25 H 0.97001 * 120.00502 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.42199 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.65590 * 179.72436 * 11 10 9 28 28 H 1.08007 * 120.25200 * 180.24299 * 12 11 10 29 29 H 0.96996 * 120.00132 * 180.02562 * 14 13 12 30 30 H 1.09007 * 109.46494 * 299.99406 * 15 14 13 31 31 H 1.09000 * 109.47713 * 59.99132 * 15 14 13 32 32 H 1.08997 * 109.46808 * 299.99766 * 16 15 14 33 33 H 1.09008 * 109.46955 * 59.99426 * 16 15 14 34 34 H 1.09012 * 110.24555 * 335.46287 * 19 17 16 35 35 H 1.09000 * 110.25271 * 97.46373 * 19 17 16 36 36 H 0.97001 * 124.35440 * 197.03936 * 20 19 17 37 37 H 1.09008 * 110.51921 * 225.11566 * 23 21 20 38 38 H 1.08993 * 110.48222 * 102.45411 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8825 2.3966 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6514 0.0016 11 6 1.3036 -4.8417 -0.0043 12 6 -0.0820 -4.7944 -0.0005 13 6 -0.7281 -3.5551 -0.0014 14 7 -2.1154 -3.5056 -0.0035 15 6 -2.8928 -4.7473 -0.0040 16 6 -4.3861 -4.4142 -0.0058 17 6 -5.1979 -5.7110 -0.0070 18 1 -4.8990 -6.3553 -0.8339 19 6 -6.7131 -5.4147 -0.0569 20 7 -7.3408 -6.4410 0.7838 21 6 -6.4393 -7.0338 1.5855 22 8 -6.6911 -7.9102 2.3852 23 6 -5.0644 -6.4487 1.3454 24 7 -0.0359 -2.4314 -0.0009 25 1 -0.4851 0.8400 -0.0004 26 1 3.0886 -3.6553 0.0021 27 1 1.8223 -5.7890 -0.0080 28 1 -0.6576 -5.7083 -0.0009 29 1 -2.5701 -2.6488 -0.0046 30 1 -2.6487 -5.3283 -0.8935 31 1 -2.6514 -5.3276 0.8865 32 1 -4.6298 -3.8334 0.8838 33 1 -4.6278 -3.8338 -0.8962 34 1 -6.9168 -4.4219 0.3446 35 1 -7.0789 -5.4905 -1.0809 36 1 -8.2848 -6.6633 0.7632 37 1 -4.3188 -7.2409 1.2759 38 1 -4.8045 -5.7475 2.1384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336843938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:33 Heat of formation + Delta-G solvation = -7.098681 kcal Electronic energy + Delta-G solvation = -20173.484649 eV Core-core repulsion = 17015.162715 eV Total energy + Delta-G solvation = -3158.321934 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52200 -38.30073 -37.10979 -35.42337 -33.54276 -32.58139 -30.40896 -29.54330 -28.29544 -26.90743 -25.33725 -23.06693 -21.54322 -20.84952 -20.58205 -20.23358 -17.60971 -17.34408 -16.73163 -16.01570 -15.23465 -14.97263 -14.87119 -14.70235 -14.29049 -13.83949 -13.77834 -13.35137 -13.26262 -12.94489 -12.52494 -12.21227 -12.11507 -11.85852 -11.39954 -11.22917 -11.06593 -10.96872 -10.92776 -10.59056 -10.42341 -10.03345 -9.89497 -9.49604 -9.39935 -8.88556 -7.90732 -7.51144 -6.51832 -6.33023 -4.47161 2.39933 2.86463 3.10603 3.11398 3.15897 3.24135 3.29759 3.96406 3.98788 4.11098 4.28025 4.58782 4.76369 4.84235 5.10179 5.14405 5.25869 5.35452 5.43341 5.60608 5.64781 5.83361 6.02049 6.13782 6.16883 6.20828 6.52425 6.58030 6.72768 6.86042 6.90041 6.94919 7.25084 7.60017 7.81634 7.92308 8.01568 8.17496 8.36783 8.68116 8.80631 9.12272 10.24591 10.40390 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.003309 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.485887 B = 8459.546925 C = 9148.639627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.434 4.434 8 H 0.083 0.917 9 C 0.292 3.708 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.367 4.367 13 C 0.410 3.590 14 N -0.740 5.740 15 C 0.142 3.858 16 C -0.120 4.120 17 C -0.096 4.096 18 H 0.095 0.905 19 C 0.104 3.896 20 N -0.735 5.735 21 C 0.519 3.481 22 O -0.539 6.539 23 C -0.155 4.155 24 N -0.532 5.532 25 H 0.268 0.732 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.395 0.605 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.408 0.592 37 H 0.105 0.895 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -5.590 -1.948 13.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.101 0.899 9 C 0.165 3.835 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.393 4.393 13 C 0.170 3.830 14 N -0.378 5.378 15 C 0.016 3.984 16 C -0.159 4.159 17 C -0.115 4.115 18 H 0.114 0.886 19 C -0.020 4.020 20 N -0.391 5.391 21 C 0.306 3.694 22 O -0.416 6.416 23 C -0.195 4.195 24 N -0.254 5.254 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.230 0.770 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.246 0.754 37 H 0.123 0.877 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.927 -5.292 -1.522 14.051 hybrid contribution 0.209 0.157 -0.101 0.280 sum -12.718 -5.135 -1.623 13.811 Atomic orbital electron populations 1.70160 1.07138 1.27165 1.29370 1.26046 0.94858 1.00904 0.93540 0.86330 0.80943 0.81433 0.78410 1.18454 1.19965 1.19961 1.19618 0.94185 0.89384 1.43459 0.89870 1.18208 0.86917 0.91853 0.86523 1.21544 0.98431 0.93494 1.20461 1.20601 0.93482 0.96368 0.95221 1.20605 0.94603 0.95480 1.28612 1.18514 0.84303 0.90265 0.89877 1.44102 1.02782 1.06718 1.84150 1.21021 0.88802 0.87883 1.00729 1.21764 0.94658 0.95956 1.03473 1.22108 0.93751 0.97837 0.97813 0.88635 1.22179 0.92852 0.91616 0.95396 1.46260 1.11410 1.39700 1.41698 1.21047 0.88283 0.80837 0.79223 1.90755 1.83625 1.30924 1.36302 1.22524 0.95650 1.02246 0.99091 1.68207 1.07694 1.24370 1.25092 0.92052 0.88725 0.88959 0.89202 0.77048 0.93050 0.92959 0.90767 0.90496 0.90635 0.90084 0.75367 0.87657 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.79 11.46 55.55 0.64 -18.16 16 2 C 0.07 1.81 5.50 -17.35 -0.10 1.72 16 3 Si 0.90 18.56 29.56 -169.99 -5.02 13.53 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.43 -11.72 9.14 -37.74 -0.34 -12.07 16 8 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 9 C 0.29 8.11 6.55 -85.00 -0.56 7.55 16 10 C -0.32 -8.00 9.83 -38.65 -0.38 -8.38 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.37 -8.34 9.34 -38.87 -0.36 -8.70 16 13 C 0.41 9.80 7.65 -155.32 -1.19 8.61 16 14 N -0.74 -13.90 5.72 -60.40 -0.35 -14.24 16 15 C 0.14 1.91 4.76 -4.04 -0.02 1.90 16 16 C -0.12 -1.11 4.67 -26.74 -0.12 -1.24 16 17 C -0.10 -0.72 3.15 -88.99 -0.28 -1.00 16 18 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 19 C 0.10 0.64 7.35 -3.12 -0.02 0.62 16 20 N -0.74 -5.87 6.24 -59.18 -0.37 -6.24 16 21 C 0.52 5.87 8.43 -10.83 -0.09 5.77 16 22 O -0.54 -8.47 18.03 5.55 0.10 -8.37 16 23 C -0.16 -1.43 5.74 -26.71 -0.15 -1.58 16 24 N -0.53 -14.54 7.89 -10.33 -0.08 -14.62 16 25 H 0.27 6.35 8.29 -40.82 -0.34 6.02 16 26 H 0.09 2.23 8.06 -52.49 -0.42 1.80 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.09 1.79 6.68 -52.48 -0.35 1.44 16 29 H 0.39 7.33 8.59 -40.82 -0.35 6.98 16 30 H 0.05 0.70 7.92 -51.92 -0.41 0.29 16 31 H 0.05 0.72 7.40 -51.93 -0.38 0.34 16 32 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 33 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.08 0.42 7.89 -51.92 -0.41 0.01 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.41 2.64 8.96 -40.82 -0.37 2.28 16 37 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.11 1.00 7.81 -51.93 -0.41 0.60 16 LS Contribution 320.55 15.07 4.83 4.83 Total: -1.00 -32.81 320.55 -9.45 -42.26 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.18 Total: 8.95 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -4.02 Total: -7.94 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -0.16 Total: -53.26 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.10 Total: -8.37 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.81 -9.45 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336843938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.157 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds