Wall clock time and date at job start Mon Mar 30 2020 02:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86808 * 119.99786 * 2 1 4 4 H 1.48496 * 109.46781 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46933 * 299.99639 * 3 2 1 6 6 H 1.48503 * 109.47004 * 59.99538 * 3 2 1 7 7 C 1.40022 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.41318 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.40593 * 119.78648 * 180.02562 * 9 7 2 11 11 C 1.38348 * 119.14595 * 180.27855 * 10 9 7 12 12 C 1.38635 * 118.68099 * 359.50083 * 11 10 9 13 13 C 1.39758 * 119.49158 * 0.49892 * 12 11 10 14 14 N 1.38825 * 119.58357 * 179.72041 * 13 12 11 15 15 C 1.46501 * 119.99986 * 0.02964 * 14 13 12 16 16 C 1.52998 * 109.47337 * 179.97438 * 15 14 13 17 17 C 1.52992 * 109.47380 * 179.97438 * 16 15 14 18 18 H 1.09005 * 110.85682 * 305.70111 * 17 16 15 19 19 C 1.54475 * 110.97284 * 181.91326 * 17 16 15 20 20 N 1.46764 * 105.47738 * 216.46801 * 19 17 16 21 21 C 1.34420 * 111.29738 * 17.00888 * 20 19 17 22 22 O 1.21285 * 124.93962 * 179.56488 * 21 20 19 23 23 C 1.51342 * 110.13219 * 359.56982 * 21 20 19 24 24 N 1.31979 * 120.83039 * 359.74726 * 13 12 11 25 25 H 0.97001 * 120.00502 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.42199 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.65590 * 179.72436 * 11 10 9 28 28 H 1.08007 * 120.25200 * 180.24299 * 12 11 10 29 29 H 0.96996 * 120.00132 * 180.02562 * 14 13 12 30 30 H 1.09007 * 109.46494 * 299.99406 * 15 14 13 31 31 H 1.09000 * 109.47713 * 59.99132 * 15 14 13 32 32 H 1.08997 * 109.46808 * 299.99766 * 16 15 14 33 33 H 1.09008 * 109.46955 * 59.99426 * 16 15 14 34 34 H 1.09012 * 110.24555 * 335.46287 * 19 17 16 35 35 H 1.09000 * 110.25271 * 97.46373 * 19 17 16 36 36 H 0.97001 * 124.35440 * 197.03936 * 20 19 17 37 37 H 1.09008 * 110.51921 * 225.11566 * 23 21 20 38 38 H 1.08993 * 110.48222 * 102.45411 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8825 2.3966 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2126 0.0010 9 6 1.3011 -2.4365 0.0005 10 6 2.0086 -3.6514 0.0016 11 6 1.3036 -4.8417 -0.0043 12 6 -0.0820 -4.7944 -0.0005 13 6 -0.7281 -3.5551 -0.0014 14 7 -2.1154 -3.5056 -0.0035 15 6 -2.8928 -4.7473 -0.0040 16 6 -4.3861 -4.4142 -0.0058 17 6 -5.1979 -5.7110 -0.0070 18 1 -4.8990 -6.3553 -0.8339 19 6 -6.7131 -5.4147 -0.0569 20 7 -7.3408 -6.4410 0.7838 21 6 -6.4393 -7.0338 1.5855 22 8 -6.6911 -7.9102 2.3852 23 6 -5.0644 -6.4487 1.3454 24 7 -0.0359 -2.4314 -0.0009 25 1 -0.4851 0.8400 -0.0004 26 1 3.0886 -3.6553 0.0021 27 1 1.8223 -5.7890 -0.0080 28 1 -0.6576 -5.7083 -0.0009 29 1 -2.5701 -2.6488 -0.0046 30 1 -2.6487 -5.3283 -0.8935 31 1 -2.6514 -5.3276 0.8865 32 1 -4.6298 -3.8334 0.8838 33 1 -4.6278 -3.8338 -0.8962 34 1 -6.9168 -4.4219 0.3446 35 1 -7.0789 -5.4905 -1.0809 36 1 -8.2848 -6.6633 0.7632 37 1 -4.3188 -7.2409 1.2759 38 1 -4.8045 -5.7475 2.1384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336843938.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:33 Heat of formation + Delta-G solvation = -30.003289 kcal Electronic energy + Delta-G solvation = -20174.477867 eV Core-core repulsion = 17015.162715 eV Total energy + Delta-G solvation = -3159.315152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30339 -40.07216 -38.09740 -36.75412 -35.24008 -33.76303 -32.22417 -31.00696 -29.32408 -27.93884 -27.18202 -24.19288 -23.25669 -22.09222 -21.51365 -21.35092 -19.22154 -18.38957 -18.01573 -17.18927 -16.60402 -16.39281 -16.09020 -15.94196 -15.77352 -15.09790 -14.78569 -14.67858 -14.46121 -14.15611 -13.84202 -13.69517 -13.18892 -13.01600 -12.86078 -12.70152 -12.57018 -12.25736 -12.16675 -11.83192 -11.76485 -11.67609 -11.23717 -10.92807 -10.59902 -10.08655 -9.79455 -9.41620 -8.23733 -8.20413 -6.45009 1.08504 1.37735 1.43713 1.54124 1.58329 1.59520 2.27271 2.43984 2.72277 2.95269 3.41935 3.51622 3.81177 4.08375 4.10575 4.32874 4.38854 4.41971 4.62753 4.69821 4.72695 4.74955 4.83438 4.91388 5.00847 5.03503 5.06209 5.17168 5.25997 5.35492 5.43994 5.75272 5.86256 6.00152 6.00697 6.11234 6.26625 6.60886 6.87855 7.01399 7.23723 7.27425 8.38047 8.54117 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.003309 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.485887 B = 8459.546925 C = 9148.639627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.027 3.973 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.472 4.472 8 H 0.084 0.916 9 C 0.259 3.741 10 C -0.347 4.347 11 C -0.031 4.031 12 C -0.367 4.367 13 C 0.393 3.607 14 N -0.734 5.734 15 C 0.136 3.864 16 C -0.107 4.107 17 C -0.085 4.085 18 H 0.107 0.893 19 C 0.105 3.895 20 N -0.722 5.722 21 C 0.511 3.489 22 O -0.594 6.594 23 C -0.155 4.155 24 N -0.566 5.566 25 H 0.276 0.724 26 H 0.100 0.900 27 H 0.127 0.873 28 H 0.120 0.880 29 H 0.394 0.606 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.416 0.584 37 H 0.104 0.896 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -5.355 -2.818 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.504 4.504 8 H 0.102 0.898 9 C 0.132 3.868 10 C -0.370 4.370 11 C -0.056 4.056 12 C -0.393 4.393 13 C 0.152 3.848 14 N -0.369 5.369 15 C 0.012 3.988 16 C -0.145 4.145 17 C -0.104 4.104 18 H 0.125 0.875 19 C -0.019 4.019 20 N -0.376 5.376 21 C 0.299 3.701 22 O -0.475 6.475 23 C -0.195 4.195 24 N -0.289 5.289 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.229 0.771 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.256 0.744 37 H 0.122 0.878 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.014 -5.068 -2.425 15.098 hybrid contribution 0.429 -0.028 0.149 0.455 sum -13.585 -5.096 -2.276 14.686 Atomic orbital electron populations 1.70238 1.08644 1.28581 1.29759 1.26919 0.95778 1.04209 0.92584 0.85128 0.79341 0.76265 0.78715 1.18133 1.19073 1.19188 1.19945 0.94524 0.90576 1.45379 0.89809 1.18671 0.87799 0.93105 0.87256 1.21691 0.98920 0.93909 1.22472 1.21012 0.93918 0.97068 0.93559 1.20973 0.94875 0.96250 1.27183 1.19006 0.86305 0.90148 0.89317 1.44322 1.01219 1.08613 1.82786 1.21315 0.90867 0.85855 1.00802 1.21645 0.91654 0.96956 1.04233 1.22032 0.94575 0.96750 0.97045 0.87461 1.22347 0.91505 0.91430 0.96571 1.46284 1.11640 1.39080 1.40628 1.21397 0.89527 0.80325 0.78850 1.90723 1.84541 1.33483 1.38756 1.22534 0.94515 1.02304 1.00159 1.68190 1.07890 1.26225 1.26567 0.91326 0.88220 0.85501 0.86222 0.77139 0.92601 0.93015 0.90555 0.89254 0.89395 0.87353 0.74438 0.87774 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.01 11.46 21.84 0.25 -39.76 16 2 C 0.03 1.38 5.50 85.29 0.47 1.85 16 3 Si 0.98 38.37 29.56 68.60 2.03 40.40 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.47 -26.28 9.14 23.46 0.21 -26.06 16 8 H 0.08 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.26 14.79 6.55 40.19 0.26 15.06 16 10 C -0.35 -17.84 9.83 22.87 0.22 -17.61 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 12 C -0.37 -16.20 9.34 22.73 0.21 -15.99 16 13 C 0.39 18.72 7.65 133.40 1.02 19.74 16 14 N -0.73 -26.81 5.72 -344.99 -1.97 -28.78 16 15 C 0.14 3.37 4.76 86.38 0.41 3.78 16 16 C -0.11 -1.66 4.67 30.59 0.14 -1.51 16 17 C -0.08 -1.00 3.15 -9.74 -0.03 -1.03 16 18 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 19 C 0.10 0.91 7.35 86.83 0.64 1.54 16 20 N -0.72 -9.88 6.24 -459.72 -2.87 -12.75 16 21 C 0.51 11.02 8.43 87.92 0.74 11.76 16 22 O -0.59 -18.83 18.03 -3.05 -0.05 -18.88 16 23 C -0.16 -2.59 5.74 30.61 0.18 -2.42 16 24 N -0.57 -31.55 7.89 -186.59 -1.47 -33.02 16 25 H 0.28 13.19 8.29 -92.71 -0.77 12.43 16 26 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 27 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 28 H 0.12 4.46 6.68 -2.91 -0.02 4.44 16 29 H 0.39 14.38 8.59 -92.71 -0.80 13.58 16 30 H 0.06 1.37 7.92 -2.38 -0.02 1.35 16 31 H 0.05 1.31 7.40 -2.39 -0.02 1.30 16 32 H 0.08 1.20 8.01 -2.39 -0.02 1.18 16 33 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.09 0.63 7.89 -2.38 -0.02 0.61 16 35 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.42 4.51 8.96 -92.71 -0.83 3.67 16 37 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.11 1.84 7.81 -2.39 -0.02 1.82 16 Total: -1.00 -73.77 320.55 0.08 -73.69 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: -0.54 Total: 31.20 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.71 Total: -12.09 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -6.06 Total: -114.31 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -73.77 0.08 -73.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336843938.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.686 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds