Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00388 * 2 1 4 4 H 1.48500 * 109.47088 * 240.00392 * 3 2 1 5 5 H 1.48501 * 109.46738 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47252 * 120.00103 * 3 2 1 7 7 C 1.37879 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47005 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47401 * 180.02562 * 11 10 9 13 13 O 1.21289 * 119.99731 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00432 * 180.02562 * 12 11 10 15 15 C 1.47215 * 121.29119 * 179.97438 * 14 12 11 16 16 C 1.52858 * 108.06371 * 115.95069 * 15 14 12 17 17 C 1.50408 * 110.73750 * 47.30677 * 16 15 14 18 18 N 1.32966 * 118.39532 * 160.47795 * 17 16 15 19 19 C 1.31584 * 121.09548 * 178.84316 * 18 17 16 20 20 N 1.31812 * 121.73793 * 0.06583 * 19 18 17 21 21 C 1.32224 * 120.57681 * 0.31537 * 20 19 18 22 22 C 1.37773 * 122.88739 * 339.84691 * 17 16 15 23 23 C 1.46796 * 121.28821 * 359.97438 * 14 12 11 24 24 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46939 * 60.00209 * 9 7 2 26 26 H 1.08996 * 109.47186 * 300.00088 * 9 7 2 27 27 H 1.08999 * 109.47438 * 60.00352 * 10 9 7 28 28 H 1.08996 * 109.47271 * 300.00098 * 10 9 7 29 29 H 1.08999 * 109.47523 * 60.00281 * 11 10 9 30 30 H 1.09004 * 109.47217 * 300.00320 * 11 10 9 31 31 H 1.08998 * 109.74560 * 235.59663 * 15 14 12 32 32 H 1.09002 * 109.74594 * 356.30747 * 15 14 12 33 33 H 1.08997 * 109.22413 * 167.64675 * 16 15 14 34 34 H 1.08997 * 109.22276 * 287.04902 * 16 15 14 35 35 H 1.07995 * 119.12822 * 180.08642 * 19 18 17 36 36 H 1.08003 * 120.37611 * 179.83891 * 21 20 19 37 37 H 1.08995 * 109.46764 * 104.24910 * 23 14 12 38 38 H 1.08996 * 109.45715 * 344.26652 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4801 -4.9871 0.0020 12 6 2.4593 -6.1326 0.0024 13 8 3.6518 -5.9110 0.0018 14 7 2.0101 -7.4033 0.0024 15 6 2.9412 -8.5435 0.0022 16 6 2.7487 -9.3129 1.3089 17 6 1.2877 -9.5485 1.5778 18 7 0.9488 -10.5132 2.4278 19 6 -0.3124 -10.7501 2.7192 20 7 -1.2913 -10.0478 2.1845 21 6 -1.0312 -9.0773 1.3249 22 6 0.2892 -8.8013 0.9923 23 6 0.5732 -7.7039 0.0025 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6041 0.8909 28 1 2.8712 -3.6048 -0.8890 29 1 0.8531 -5.0450 -0.8877 30 1 0.8538 -5.0447 0.8923 31 1 2.7251 -9.1953 -0.8443 32 1 3.9671 -8.1812 -0.0640 33 1 3.2603 -10.2728 1.2389 34 1 3.1756 -8.7377 2.1303 35 1 -0.5516 -11.5407 3.4149 36 1 -1.8360 -8.5056 0.8868 37 1 0.2693 -8.0258 -0.9935 38 1 0.0153 -6.8100 0.2813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336932968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = -1.214968 kcal Electronic energy + Delta-G solvation = -20447.359149 eV Core-core repulsion = 17289.292352 eV Total energy + Delta-G solvation = -3158.066797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67393 -39.78723 -36.87522 -34.61761 -34.23929 -32.47559 -32.22962 -31.35625 -28.04983 -26.66361 -25.26371 -23.88855 -23.49384 -22.00015 -20.24537 -19.12418 -17.92520 -17.37162 -16.63378 -16.31940 -16.19400 -15.66948 -15.36354 -14.61776 -14.44734 -14.23263 -14.10304 -13.70493 -13.63790 -13.09650 -12.66373 -12.52644 -12.24122 -11.96712 -11.70863 -11.41434 -11.28037 -10.80591 -10.79680 -10.64018 -10.56945 -9.80780 -9.71498 -9.59573 -9.56374 -9.30854 -9.06155 -8.88666 -8.33402 -5.99341 -4.00844 0.53427 0.70115 2.73387 2.78049 3.35635 3.39045 3.39190 3.42917 3.67743 3.87246 4.05632 4.23277 4.40963 4.47993 4.65449 4.84966 4.90774 5.02175 5.03500 5.17623 5.31540 5.36819 5.46918 5.56732 5.59169 5.62565 5.65636 6.05066 6.13628 6.26100 6.62478 6.67603 6.88203 7.11659 7.28368 7.67935 7.74348 7.80478 8.00885 8.25008 8.44771 9.05888 9.63231 11.12103 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.003330 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.988576 B = 8405.182460 C = 9051.279614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.521 3.479 13 O -0.530 6.530 14 N -0.626 5.626 15 C 0.111 3.889 16 C -0.090 4.090 17 C 0.190 3.810 18 N -0.523 5.523 19 C 0.292 3.708 20 N -0.521 5.521 21 C 0.160 3.840 22 C -0.201 4.201 23 C 0.158 3.842 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.196 0.804 36 H 0.174 0.826 37 H 0.089 0.911 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -22.561 1.001 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.178 4.178 12 C 0.312 3.688 13 O -0.405 6.405 14 N -0.362 5.362 15 C -0.012 4.012 16 C -0.128 4.128 17 C 0.045 3.955 18 N -0.237 5.237 19 C 0.004 3.996 20 N -0.234 5.234 21 C -0.008 4.008 22 C -0.206 4.206 23 C 0.033 3.967 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.213 0.787 36 H 0.191 0.809 37 H 0.107 0.893 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.120 -23.020 1.653 23.107 hybrid contribution 0.359 1.383 -0.421 1.490 sum -0.761 -21.637 1.232 21.685 Atomic orbital electron populations 1.69948 1.06031 1.26683 1.51058 1.25014 0.94859 0.99242 0.95336 0.86651 0.79583 0.83053 0.78698 1.20217 1.21322 1.20222 1.21230 0.93162 0.91012 1.50375 0.92623 1.19123 0.93931 0.91425 0.97110 1.21467 0.98689 0.91427 1.01770 1.21907 0.98222 0.94060 1.03648 1.21284 0.90362 0.82979 0.74213 1.90684 1.17266 1.83844 1.48684 1.48232 1.06126 1.06148 1.75658 1.21574 0.96443 0.87294 0.95866 1.20819 0.89782 1.02455 0.99752 1.21207 0.96669 0.88392 0.89184 1.68438 1.22119 1.18052 1.15046 1.24931 0.83490 0.96145 0.95049 1.68486 1.37868 1.07107 1.09960 1.23242 0.94925 0.91938 0.90700 1.21444 0.95721 1.01089 1.02317 1.20351 0.82441 0.96626 0.97246 0.92992 0.96573 0.96637 0.92682 0.92585 0.89121 0.89346 0.90815 0.87541 0.88082 0.88551 0.78744 0.80890 0.89344 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.00 4.44 -26.73 -0.12 -2.12 16 11 C -0.14 -2.17 4.12 -27.88 -0.11 -2.28 16 12 C 0.52 7.94 7.72 -10.99 -0.08 7.86 16 13 O -0.53 -10.04 15.46 5.55 0.09 -9.95 16 14 N -0.63 -7.11 2.94 -174.46 -0.51 -7.62 16 15 C 0.11 1.07 6.43 -3.73 -0.02 1.04 16 16 C -0.09 -0.81 6.13 -28.10 -0.17 -0.98 16 17 C 0.19 1.95 6.65 -82.41 -0.55 1.40 16 18 N -0.52 -5.60 10.31 -11.00 -0.11 -5.71 16 19 C 0.29 2.78 12.28 -92.32 -1.13 1.64 16 20 N -0.52 -5.24 10.45 -14.56 -0.15 -5.40 16 21 C 0.16 1.38 10.94 -17.12 -0.19 1.20 16 22 C -0.20 -1.85 5.82 -104.64 -0.61 -2.46 16 23 C 0.16 1.34 6.13 -5.14 -0.03 1.31 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.09 1.25 8.11 -51.93 -0.42 0.82 16 30 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 1.14 7.07 -51.93 -0.37 0.77 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.20 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.85 6.20 -51.93 -0.32 0.53 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -34.54 319.69 -9.00 -43.54 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.27 Total: -3.80 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -3.57 Total: -6.64 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -0.04 Total: -44.79 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.54 -9.00 -43.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336932968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.325 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds