Wall clock time and date at job start Mon Mar 30 2020 01:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00388 * 2 1 4 4 H 1.48500 * 109.47088 * 240.00392 * 3 2 1 5 5 H 1.48501 * 109.46738 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47252 * 120.00103 * 3 2 1 7 7 C 1.37879 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47005 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47401 * 180.02562 * 11 10 9 13 13 O 1.21289 * 119.99731 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00432 * 180.02562 * 12 11 10 15 15 C 1.47215 * 121.29119 * 179.97438 * 14 12 11 16 16 C 1.52858 * 108.06371 * 115.95069 * 15 14 12 17 17 C 1.50408 * 110.73750 * 47.30677 * 16 15 14 18 18 N 1.32966 * 118.39532 * 160.47795 * 17 16 15 19 19 C 1.31584 * 121.09548 * 178.84316 * 18 17 16 20 20 N 1.31812 * 121.73793 * 0.06583 * 19 18 17 21 21 C 1.32224 * 120.57681 * 0.31537 * 20 19 18 22 22 C 1.37773 * 122.88739 * 339.84691 * 17 16 15 23 23 C 1.46796 * 121.28821 * 359.97438 * 14 12 11 24 24 H 0.97000 * 119.99607 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46939 * 60.00209 * 9 7 2 26 26 H 1.08996 * 109.47186 * 300.00088 * 9 7 2 27 27 H 1.08999 * 109.47438 * 60.00352 * 10 9 7 28 28 H 1.08996 * 109.47271 * 300.00098 * 10 9 7 29 29 H 1.08999 * 109.47523 * 60.00281 * 11 10 9 30 30 H 1.09004 * 109.47217 * 300.00320 * 11 10 9 31 31 H 1.08998 * 109.74560 * 235.59663 * 15 14 12 32 32 H 1.09002 * 109.74594 * 356.30747 * 15 14 12 33 33 H 1.08997 * 109.22413 * 167.64675 * 16 15 14 34 34 H 1.08997 * 109.22276 * 287.04902 * 16 15 14 35 35 H 1.07995 * 119.12822 * 180.08642 * 19 18 17 36 36 H 1.08003 * 120.37611 * 179.83891 * 21 20 19 37 37 H 1.08995 * 109.46764 * 104.24910 * 23 14 12 38 38 H 1.08996 * 109.45715 * 344.26652 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4801 -4.9871 0.0020 12 6 2.4593 -6.1326 0.0024 13 8 3.6518 -5.9110 0.0018 14 7 2.0101 -7.4033 0.0024 15 6 2.9412 -8.5435 0.0022 16 6 2.7487 -9.3129 1.3089 17 6 1.2877 -9.5485 1.5778 18 7 0.9488 -10.5132 2.4278 19 6 -0.3124 -10.7501 2.7192 20 7 -1.2913 -10.0478 2.1845 21 6 -1.0312 -9.0773 1.3249 22 6 0.2892 -8.8013 0.9923 23 6 0.5732 -7.7039 0.0025 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 -0.8881 26 1 0.6246 -2.5563 0.8919 27 1 2.8725 -3.6041 0.8909 28 1 2.8712 -3.6048 -0.8890 29 1 0.8531 -5.0450 -0.8877 30 1 0.8538 -5.0447 0.8923 31 1 2.7251 -9.1953 -0.8443 32 1 3.9671 -8.1812 -0.0640 33 1 3.2603 -10.2728 1.2389 34 1 3.1756 -8.7377 2.1303 35 1 -0.5516 -11.5407 3.4149 36 1 -1.8360 -8.5056 0.8868 37 1 0.2693 -8.0258 -0.9935 38 1 0.0153 -6.8100 0.2813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336932968.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:01 Heat of formation + Delta-G solvation = -22.649364 kcal Electronic energy + Delta-G solvation = -20448.288614 eV Core-core repulsion = 17289.292352 eV Total energy + Delta-G solvation = -3158.996262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40269 -40.86361 -37.84701 -36.13537 -35.31439 -34.05992 -33.25919 -32.32737 -29.71386 -27.53141 -26.35990 -25.30922 -24.28219 -23.10601 -21.84098 -20.12645 -18.89861 -18.35052 -18.14707 -17.42675 -17.22748 -16.78483 -16.46222 -16.23283 -15.64067 -15.03320 -14.97520 -14.76256 -14.56044 -14.22938 -14.13748 -13.74929 -13.50834 -13.25968 -13.07183 -12.65691 -12.58802 -12.48526 -12.34361 -12.03231 -11.54622 -11.53395 -11.44484 -11.25008 -10.77922 -10.52471 -10.32761 -10.28342 -9.79971 -8.19070 -6.28530 -0.15471 0.00450 1.40592 1.42930 1.50994 1.57755 1.84440 2.42507 2.69458 2.98974 3.14131 3.25581 3.37388 3.52055 3.58819 3.85718 4.03527 4.13739 4.19101 4.25668 4.39316 4.40987 4.55003 4.62475 4.73324 4.77451 4.89756 4.90614 4.98118 5.10675 5.20880 5.38314 5.39344 5.55694 5.77848 5.88367 5.93063 6.24759 6.31959 6.86776 7.05056 7.11580 7.39966 8.92053 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.003330 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.988576 B = 8405.182460 C = 9051.279614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.523 3.477 13 O -0.577 6.577 14 N -0.618 5.618 15 C 0.112 3.888 16 C -0.082 4.082 17 C 0.172 3.828 18 N -0.541 5.541 19 C 0.285 3.715 20 N -0.537 5.537 21 C 0.161 3.839 22 C -0.203 4.203 23 C 0.155 3.845 24 H 0.264 0.736 25 H 0.004 0.996 26 H 0.000 1.000 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.219 0.781 36 H 0.204 0.796 37 H 0.119 0.881 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -23.259 0.577 23.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.314 3.686 13 O -0.456 6.456 14 N -0.351 5.351 15 C -0.011 4.011 16 C -0.121 4.121 17 C 0.028 3.972 18 N -0.255 5.255 19 C -0.003 4.003 20 N -0.251 5.251 21 C -0.007 4.007 22 C -0.208 4.208 23 C 0.031 3.969 24 H 0.073 0.927 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.235 0.765 36 H 0.220 0.780 37 H 0.136 0.864 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.878 -23.764 1.229 23.870 hybrid contribution 0.529 1.531 -0.271 1.642 sum -1.349 -22.233 0.958 22.294 Atomic orbital electron populations 1.70048 1.07404 1.27807 1.51531 1.25867 0.95810 1.02920 0.94737 0.85599 0.78436 0.78609 0.79016 1.19426 1.20410 1.19578 1.21680 0.93339 0.92911 1.50773 0.93143 1.19008 0.94169 0.92198 0.95631 1.21171 0.97664 0.93005 1.00268 1.21736 0.97993 0.91508 1.05729 1.21048 0.89379 0.84108 0.74096 1.90671 1.18918 1.84719 1.51286 1.48176 1.07897 1.05267 1.73746 1.21697 0.95428 0.86814 0.97145 1.20743 0.89641 1.02861 0.98824 1.21419 0.97248 0.88851 0.89657 1.68457 1.22790 1.18636 1.15665 1.25448 0.83148 0.96531 0.95154 1.68561 1.38113 1.07796 1.10635 1.23747 0.95515 0.91494 0.89938 1.21504 0.95828 1.01037 1.02417 1.20641 0.80482 0.96994 0.98742 0.92677 0.97730 0.98117 0.94399 0.93904 0.86649 0.87620 0.88266 0.88959 0.86537 0.89980 0.76452 0.77958 0.86377 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.08 -3.51 4.44 30.59 0.14 -3.38 16 11 C -0.13 -3.91 4.12 29.85 0.12 -3.79 16 12 C 0.52 15.48 7.72 87.66 0.68 16.16 16 13 O -0.58 -22.10 15.46 -3.06 -0.05 -22.15 16 14 N -0.62 -12.87 2.94 -824.24 -2.42 -15.30 16 15 C 0.11 1.97 6.43 86.20 0.55 2.53 16 16 C -0.08 -1.40 6.13 29.71 0.18 -1.22 16 17 C 0.17 3.26 6.65 42.19 0.28 3.54 16 18 N -0.54 -10.90 10.31 -188.72 -1.95 -12.84 16 19 C 0.28 4.98 12.28 180.94 2.22 7.20 16 20 N -0.54 -9.75 10.45 -199.99 -2.09 -11.84 16 21 C 0.16 2.36 10.94 84.80 0.93 3.28 16 22 C -0.20 -3.25 5.82 -19.87 -0.12 -3.36 16 23 C 0.15 2.15 6.13 85.51 0.52 2.68 16 24 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 26 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 27 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 28 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 29 H 0.12 2.90 8.11 -2.39 -0.02 2.88 16 30 H 0.11 2.82 7.58 -2.39 -0.02 2.80 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.95 7.07 -2.39 -0.02 1.93 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.22 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 1.45 6.20 -2.39 -0.01 1.44 16 Total: -1.00 -75.20 319.69 3.22 -71.98 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.06 Total: 4.30 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 6.36 Total: -5.68 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -6.18 Total: -95.20 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.05 Total: -22.15 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -75.20 3.22 -71.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336932968.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.332 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds