Wall clock time and date at job start Mon Mar 30 2020 02:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86791 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47095 * 239.99301 * 3 2 1 5 5 H 1.48499 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47269 * 119.99944 * 3 2 1 7 7 C 1.40033 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.40614 * 119.79143 * 180.02562 * 9 7 2 11 11 C 1.38298 * 119.13394 * 180.02562 * 10 9 7 12 12 C 1.38701 * 118.66926 * 359.97438 * 11 10 9 13 13 C 1.39633 * 119.49345 * 359.97438 * 12 11 10 14 14 N 1.39274 * 119.57281 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00066 * 174.64191 * 14 13 12 16 16 O 1.21281 * 120.00077 * 5.14038 * 15 14 13 17 17 C 1.50697 * 120.00163 * 185.14533 * 15 14 13 18 18 C 1.53006 * 109.47478 * 179.97438 * 17 15 14 19 19 C 1.53773 * 113.61450 * 272.49884 * 18 17 15 20 20 C 1.53780 * 87.08085 * 220.01348 * 19 18 17 21 21 N 1.46894 * 113.61682 * 270.88320 * 20 19 18 22 22 C 1.53773 * 113.61340 * 174.99904 * 18 17 15 23 23 N 1.31928 * 120.85138 * 0.28067 * 13 12 11 24 24 H 0.96999 * 119.99855 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.43037 * 0.02562 * 10 9 7 26 26 H 1.07996 * 120.66685 * 179.97438 * 11 10 9 27 27 H 1.07998 * 120.24987 * 180.02562 * 12 11 10 28 28 H 0.97002 * 119.99588 * 354.64063 * 14 13 12 29 29 H 1.08994 * 109.47229 * 300.00078 * 17 15 14 30 30 H 1.09003 * 109.46982 * 60.00014 * 17 15 14 31 31 H 1.08999 * 112.84104 * 43.80366 * 18 17 15 32 32 H 1.08998 * 113.61718 * 334.56502 * 19 18 17 33 33 H 1.09003 * 113.61327 * 105.46828 * 19 18 17 34 34 H 1.09005 * 113.61048 * 139.97923 * 20 19 18 35 35 H 1.00900 * 111.00445 * 277.49407 * 21 20 19 36 36 H 1.00898 * 110.99939 * 41.45782 * 21 20 19 37 37 H 1.09003 * 113.61438 * 254.52887 * 22 18 17 38 38 H 1.09003 * 113.61723 * 25.43914 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0953 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0083 -3.6519 0.0016 11 6 1.3031 -4.8416 0.0011 12 6 -0.0831 -4.7934 0.0000 13 6 -0.7279 -3.5549 0.0001 14 7 -2.1198 -3.5046 -0.0016 15 6 -2.7513 -2.3190 0.1074 16 8 -2.1110 -1.2891 0.1131 17 6 -4.2532 -2.2731 0.2225 18 6 -4.7121 -0.8177 0.3332 19 6 -4.7333 -0.2866 1.7762 20 6 -6.0452 0.4276 1.4105 21 7 -5.8480 1.7764 0.8630 22 6 -6.2409 -0.6522 0.3332 23 7 -0.0358 -2.4318 -0.0044 24 1 -0.4850 0.8400 -0.0004 25 1 3.0883 -3.6561 0.0029 26 1 1.8213 -5.7891 0.0015 27 1 -0.6592 -5.7069 0.0000 28 1 -2.6345 -4.3229 -0.0812 29 1 -4.6994 -2.7289 -0.6614 30 1 -4.5664 -2.8211 1.1112 31 1 -4.2014 -0.1585 -0.3687 32 1 -4.8557 -1.0672 2.5270 33 1 -3.9134 0.3951 2.0026 34 1 -6.7946 0.3961 2.2015 35 1 -5.7240 2.4521 1.6019 36 1 -5.0701 1.7958 0.2208 37 1 -6.6382 -0.2655 -0.6053 38 1 -6.7755 -1.5327 0.6896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340868806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:49 Heat of formation + Delta-G solvation = 36.184353 kcal Electronic energy + Delta-G solvation = -21238.600755 eV Core-core repulsion = 18082.155714 eV Total energy + Delta-G solvation = -3156.445041 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.77104 -38.74618 -37.25250 -34.07274 -32.96878 -32.24834 -30.31654 -29.57171 -28.21819 -25.54216 -25.52164 -23.20905 -21.67501 -21.04096 -19.23859 -18.81177 -17.73454 -16.38909 -16.03719 -15.84248 -15.19008 -14.72867 -14.62243 -14.43574 -13.78850 -13.59425 -13.47971 -13.03035 -12.78641 -12.43404 -12.26923 -11.95366 -11.83171 -11.40365 -11.10242 -10.97616 -10.76796 -10.65584 -10.46707 -10.27413 -10.00605 -9.94882 -9.63274 -8.99980 -8.87278 -8.70019 -7.95553 -7.18497 -6.94130 -6.13439 -4.39667 2.79982 3.08978 3.15001 3.17458 3.27206 3.79935 3.91059 4.05737 4.42838 4.67455 4.76852 4.90986 4.95656 5.04542 5.41115 5.59032 5.72207 5.76941 5.79876 5.91339 5.96267 6.05686 6.12990 6.22210 6.29082 6.50273 6.56565 6.71945 6.84938 6.86591 7.13299 7.24188 7.40230 7.56842 7.64880 7.82123 8.08953 8.21964 8.49586 8.75534 9.05835 9.33719 10.26069 10.48285 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.006420 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.124213 B = 4360.321588 C = 6085.527560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.654 5.654 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.426 4.426 8 H 0.081 0.919 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.670 5.670 15 C 0.467 3.533 16 O -0.408 6.408 17 C -0.129 4.129 18 C -0.088 4.088 19 C -0.167 4.167 20 C 0.068 3.932 21 N -0.832 5.832 22 C -0.133 4.133 23 N -0.473 5.473 24 H 0.271 0.729 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.397 0.603 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.341 0.659 36 H 0.346 0.654 37 H 0.071 0.929 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 -0.977 1.788 11.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.273 5.273 2 C -0.171 4.171 3 Si 0.720 3.280 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.457 4.457 8 H 0.099 0.901 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.133 3.867 14 N -0.317 5.317 15 C 0.249 3.751 16 O -0.272 6.272 17 C -0.170 4.170 18 C -0.107 4.107 19 C -0.207 4.207 20 C -0.044 4.044 21 N -0.361 5.361 22 C -0.171 4.171 23 N -0.192 5.192 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.231 0.769 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.136 0.769 1.498 12.252 hybrid contribution 1.573 -0.886 0.459 1.862 sum -10.563 -0.117 1.957 10.743 Atomic orbital electron populations 1.70332 1.05680 1.27302 1.23984 1.26172 0.95146 1.00512 0.95275 0.86596 0.80228 0.81543 0.79670 1.19168 1.20439 1.19211 1.19535 0.94011 0.89398 1.42729 0.90061 1.18396 0.87269 0.91923 0.87847 1.21622 0.98528 0.93571 1.19212 1.20559 0.93220 0.96501 0.95827 1.20513 0.94807 0.95021 1.28088 1.18666 0.83545 0.90871 0.93639 1.43512 1.05008 1.09434 1.73772 1.20820 0.89516 0.84846 0.79946 1.91125 1.65529 1.30772 1.39729 1.21686 0.94066 0.98223 1.03022 1.22259 0.94972 0.95486 0.97987 1.23773 0.98638 1.01137 0.97150 1.22427 0.96750 0.88501 0.96732 1.58723 1.50346 1.05405 1.21606 1.23138 0.96256 0.98134 0.99571 1.68717 1.06909 1.23238 1.20321 0.91710 0.88626 0.88690 0.89169 0.76948 0.89863 0.89946 0.88249 0.90302 0.91255 0.89882 0.84616 0.84033 0.90994 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -17.98 9.00 55.55 0.50 -17.48 16 2 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 3 Si 0.90 19.29 29.56 -169.99 -5.02 14.26 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.43 -11.80 9.14 -37.73 -0.34 -12.15 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.69 16 9 C 0.27 7.68 6.55 -85.00 -0.56 7.13 16 10 C -0.31 -7.81 9.83 -38.66 -0.38 -8.19 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.16 9.95 -38.89 -0.39 -8.54 16 13 C 0.37 9.14 7.43 -154.97 -1.15 7.99 16 14 N -0.67 -13.18 5.38 -11.40 -0.06 -13.24 16 15 C 0.47 9.17 7.79 -10.99 -0.09 9.08 16 16 O -0.41 -9.92 11.53 5.56 0.06 -9.86 16 17 C -0.13 -1.76 5.54 -27.88 -0.15 -1.92 16 18 C -0.09 -1.19 2.81 -89.81 -0.25 -1.45 16 19 C -0.17 -2.20 7.35 -25.92 -0.19 -2.39 16 20 C 0.07 0.77 5.18 -66.90 -0.35 0.42 16 21 N -0.83 -9.35 9.64 -3.98 -0.04 -9.39 16 22 C -0.13 -1.46 7.44 -25.92 -0.19 -1.65 16 23 N -0.47 -13.33 5.74 -10.26 -0.06 -13.39 16 24 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 25 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 26 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.40 6.01 8.70 -40.82 -0.36 5.65 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.97 7.84 -51.93 -0.41 0.56 16 31 H 0.10 1.59 7.25 -51.93 -0.38 1.21 16 32 H 0.08 0.98 7.89 -51.93 -0.41 0.57 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.34 3.34 9.08 -39.29 -0.36 2.98 16 36 H 0.35 4.12 8.15 -39.29 -0.32 3.80 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -32.25 316.70 -9.54 -41.78 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -5.15 Total: 14.02 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -4.54 Total: -11.48 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.34 Total: -53.50 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.06 Total: -9.86 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.25 -9.54 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340868806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.968 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds